[yt-users] memory required estimate

[Matthew Turk]

Hi Geoffrey,

No, that's just a bug I seem to have introduced.   I've since fixed
it, but more importantly, that installation can't be auto-updated in
this manner.  You have to cd to $YT_DEST/src/yt-hg/ and re-run
python2.7 setup.py install.

-Matt

On Fri, Mar 18, 2011 at 12:59 PM,  <gso at physics.ucsd.edu> wrote:
> On Nautilus I didn't do the hg pull/up, python setup.py install and just
> did the
> yt instinfo -u
> yt instinfo
> and got
> The current version of the code is:
>
> ---
> d6541a513417 (yt) tip
>
> ---
>
> This installation CAN be automatically updated.
> Updated successfully.
>
> (The rumor is they fixed the HDF5 error on Nautilus caused by a DDN disk
> driver error, so giving Nautilus another try now)
>
> But on triton after the hg pull/up, python setup.py install
> yt instinfo -u gave the following error... sorry I'm not that great with
> hg yet, did I break yt, should I just reinstall it?  (the new install
> script is fast!)
>
> From
> G.S.
>
> yt : [INFO     ] 2011-03-18 12:51:27,673 Loading plugins from
> /home/gso/.yt/my_plugins.py
>
> yt module located at:
>    /home/gso/TritonYT/lib/python2.7/site-packages/yt-2.1dev-py2.7-linux-x86_64.egg
> Traceback (most recent call last):
>  File "/home/gso/TritonYT/bin/yt", line 9, in <module>
>    load_entry_point('yt==2.1dev', 'console_scripts', 'yt')()
>  File
> "/home/gso/TritonYT/lib/python2.7/site-packages/yt-2.1dev-py2.7-linux-x86_64.egg/yt/utilities/command_line.py",
> line 618, in run_main
>    sys.exit(YT.main())
>  File
> "/home/gso/TritonYT/lib/python2.7/site-packages/yt-2.1dev-py2.7-linux-x86_64.egg/yt/utilities/cmdln.py",
> line 257, in main
>    return self.cmd(args)
>  File
> "/home/gso/TritonYT/lib/python2.7/site-packages/yt-2.1dev-py2.7-linux-x86_64.egg/yt/utilities/cmdln.py",
> line 280, in cmd
>    retval = self.onecmd(argv)
>  File
> "/home/gso/TritonYT/lib/python2.7/site-packages/yt-2.1dev-py2.7-linux-x86_64.egg/yt/utilities/cmdln.py",
> line 412, in onecmd
>    return self._dispatch_cmd(handler, argv)
>  File
> "/home/gso/TritonYT/lib/python2.7/site-packages/yt-2.1dev-py2.7-linux-x86_64.egg/yt/utilities/cmdln.py",
> line 1100, in _dispatch_cmd
>    return handler(argv[0], opts, *args)
>  File
> "/home/gso/TritonYT/lib/python2.7/site-packages/yt-2.1dev-py2.7-linux-x86_64.egg/yt/utilities/command_line.py",
> line 359, in do_instinfo
>    if vstring is not None and opts.outputfile is not None:
> UnboundLocalError: local variable 'vstring' referenced before assignment
>
>
>
>
>
>
>> Hi Geoffrey,
>>
>> Dunno if the memory estimates are right; the contour finder can be a
>> bit tricky to estimate memory requirements for because of how it
>> links.  The bug you included was actually related to something other
>> than an OOM.
>>
>> You should be able to run:
>>
>> yt instinfo -u
>>
>> to get the latest version.  If you are on the development branch,
>> cythonization is done at compile time, so you should not need to do
>> that manually anymore.
>>
>> After you have run that command, the output of
>>
>> yt instinfo
>>
>> should tell you you are on the hash d6541a513417.
>>
>> -Matt
>>
>> On Fri, Mar 18, 2011 at 12:38 PM,  <gso at physics.ucsd.edu> wrote:
>>> So the memory estimates were correct?  it should be ~25GB and my 64GB is
>>> plenty?
>>>
>>> After I hg pull, hg up, and python setup.py install, do I need to
>>> re-Cython it or anything like that?
>>>
>>> From
>>> G.S.
>>>
>>>> Geoffrey,
>>>>
>>>>>   File "ContourFinding.pyx", line 92, in
>>>>> yt.utilities.amr_utils.construct_boundary_relationships
>>>>> (yt/utilities/amr$
>>>>> IndexError: Out of bounds on buffer access (axis 0)
>>>>
>>>> I've just pushed a fix for this problem, go ahead and update. I
>>>> actually
>>>> fixed this a few days ago in my own branch. However, I was waiting to
>>>> merge with the mainline because there are very alpha/non-functional
>>>> things
>>>> I'm working on in my branch that I am not ready to merge yet.
>>>>
>>>>
>>>> Stephen Skory
>>>> stephenskory at yahoo.com
>>>> http://stephenskory.com/
>>>> 510.621.3687 (google voice)
>>>>
>>>> _______________________________________________
>>>> yt-users mailing list
>>>> yt-users at lists.spacepope.org
>>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>>
>>>
>>>
>>> _______________________________________________
>>> yt-users mailing list
>>> yt-users at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>
>
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>