[yt-users] Import error: undefined PyUnicodeUCS2_FromUnicode
Agarwal, Shankar
sagarwal at ku.edu
Fri Jan 28 07:41:07 PST 2011
Hi,
I am having a strange problem on Ember. When I try to run my python scripts interactively, they run fine. But when I submit them to a queue, I get the following error:
set_SCR: using existing PBS job directory /scratch/batch/25508
set_SCR: using existing PBS job directory /scratch/batch/25508
yt.lagos WARNING 2011-01-28 09:18:12,423 No h5py. Data serialization disabled.
Traceback (most recent call last):
File "hop_yt.py", line 7, in <module>
from yt.mods import *
File "/gpfs1/u/ac/sagarwal/software/enzo/src/yt/yt/mods.py", line 32, in <module>
import yt.lagos as lagos
File "/gpfs1/u/ac/sagarwal/software/enzo/src/yt/yt/lagos/__init__.py", line 47, in <module>
from yt.arraytypes import *
File "/gpfs1/u/ac/sagarwal/software/enzo/src/yt/yt/arraytypes.py", line 30, in <module>
import numpy as na
File "/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/__init__.py", line 130, in <module>
import add_newdocs
File "/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/add_newdocs.py", line 9, in <module>
from lib import add_newdoc
File "/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/lib/__init__.py", line 4, in <module>
from type_check import *
File "/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/lib/type_check.py", line 8, in <module>
import numpy.core.numeric as _nx
File "/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/core/__init__.py", line 5, in <module>
import multiarray
ImportError: /u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/core/multiarray.so: undefined symbol: PyUnicodeUCS2_FromUnicode
My PATH is :
/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/bin:/usr/apps/math/gsl/intel/1.14/bin:/blahblah.....
PYTHONPATH :
/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages
LD_LIBRARY_PATH :
/u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/lib:/usr/apps/math/gsl/intel/1.14/lib:/usr/local/lib64:/lib:/lib64:/usr/lib64:/usr/lib:/usr/X11R6/lib64:/blahblah...
My script :
from yt.mods import *
import yt.extensions.HaloProfiler as HP
from yt.extensions.HaloMassFcn import *
fn = "RedshiftOutput0001"
pf = load(fn)
halos = HaloFinder(pf,160,padding=0.02)
halos.write_out("HopAnalysis.out")
pc = PlotCollection(pf,center=[0.5,0.5,0.5])
for ax in range(3):
p = pc.add_slice("Density", ax)
pc.save()
Any suggestions.
Shankar
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