[yt-users] installing yt on mac osx 10.6

Matthew Turk matthewturk at gmail.com
Mon Apr 25 02:55:49 PDT 2011 

Hi Matteo,

(does gnuplot work again?)

Glad to hear the yt command is being found.  Can you describe what
isn't working?  It is usually most helpful if you tell us:

1) Either which command you are running or show us a short sample of the script
2) Which simulation code generated the data you are running on
3) How it is failing -- does it produce unexpected output, does it
error out, does it throw an exception?
4) The output of "yt instinfo" - specifically the hash of letters and
numbers that describes the state of your repository.

Best,

Matt

On Apr 25, 2011 5:41 AM, "Matteo Tomassetti" <m.tomassetti at gmail.com> wrote:
> Thanks Matthew,
> you are very kind! Now the yt command works but I still have problems with
> the test script .... I checked at my file but it was already corrected ....
>
> 2011/4/25 Matthew Turk <matthewturk at gmail.com>
>
>> Hi Matteo,
>>
>> yt is installed into a fully local directory, without touching
>> anything outside of it. So -- worst case scenario is that you delete
>> that directory, undo your changes to your environment variables, and
>> it goes back to normal.
>>
>> There are three variables it tells you to change in the
>> install_script.sh. PATH, LD_LIBRARY_PATH, and PYTHONPATH. It also
>> tells you to set YT_DEST. Here's how it looks in my .bashrc -- if you
>> are using csh, yours would look differently.
>>
>> export YT_DEST=/home/mturk/yt-x86_64
>> export PATH=$YT_DEST/bin:$PATH
>> export LD_LIBRARY_PATH=$YT_DEST/lib:$LD_LIBRARY_PATH
>> export PYTHONPATH=$YT_DEST/lib/python2.7/site-packages:$PYTHONPATH
>>
>> (These usually go at the bottom.) Note that in the definition of PATH
>> I also include the old value of PATH -- this is how programs like
>> gnuplot and so on can be found. But I include the YT_DEST path first,
>> so that it gets searched before the other.
>>
>> If you use csh, this will look differently, but I don't know csh so I
>> can't speak to how.
>>
>> Now, another important note is that if you try to re-set these in an
>> existing shell, it won't bring back the original value of PATH -- if
>> you mistakenly do something like "export PATH=/something" then the old
>> version is gone, and you'll have to log out / log back in to get it
>> back from the systemwide profile.
>>
>> Anyway, if you continue to have issues, it might be most productive if
>> you show us what PATH and LD_LIBRARY_PATH are set to in the shell
>> "echo $LD_LIBRARY_PATH" and "echo $PATH") and how you set them in your
>> ~/.bashrc or ~/.cshrc.
>>
>> -Matt
>>
>> On Mon, Apr 25, 2011 at 5:07 AM, Matteo Tomassetti
>> <m.tomassetti at gmail.com> wrote:
>> > Hi Matt,
>> > I'm sorry but nothing works here! I changes the file as you said and run
>> "yt
>> > instinfo -u"....
>> > I am still not able to launch yt on a shell and also to run the test
>> > scripts!
>> > Moreover, there has been conflicts with some other applications. Now when
>> I
>> > type "gnuplot" for example I receive the message command not found! I
>> > checked the .profile and it seems ok. I'm a bit desperate now because yt
>> > does not work and I also have lots of bugs in all other programs.
>> > Please, help!
>> >
>> > 2011/4/24 Matthew Turk <matthewturk at gmail.com>
>> >>
>> >> Hi Matteo and Cameron,
>> >>
>> >> The second issue should be fixed in these revisions:
>> >>
>> >> http://hg.enzotools.org/yt/changeset/2ac5c7fd4421
>> >> http://hg.enzotools.org/yt/changeset/6ba145c8686b
>> >>
>> >> So running "yt instinfo -u" should update the current yt installation
>> >> to get it working.
>> >>
>> >> And, Matteo, thank you very much for the kind words. We hope yt can
>> >> be useful for you, too, and appreciate the feedback! If you run into
>> >> anything else, please feel free to email back and let us know. I will
>> >> also look into replacing "wget" with "curl" as needed in the
>> >> installation script -- thanks for the tip. :)
>> >>
>> >> Best,
>> >>
>> >> Matt
>> >>
>> >> On Sun, Apr 24, 2011 at 8:52 AM, Cameron Hummels
>> >> <chummels at astro.columbia.edu> wrote:
>> >> > Hi Matteo,
>> >> >
>> >> > When you run the installer, there should be a few messages that it
>> sends
>> >> > to
>> >> > you when it finishes. One of those messages describes how to add yt
>> to
>> >> > your
>> >> > new path and pythonpath environment variables. If you follow these
>> >> > instructions, it ought to set you straight. So go ahead and rerun the
>> >> > installer (don't worry, it won't break anything, or even take very
>> long
>> >> > to
>> >> > run now that it is already installed), and make sure to follow the
>> >> > instructions it presents you with at the end.
>> >> >
>> >> > That may fix your second error as well, but I'm not sure. Give it a
>> >> > shot.
>> >> >
>> >> > Cameron
>> >> >
>> >> > On 04/24/2011 04:16 AM, Matteo Tomassetti wrote:
>> >> >
>> >> > Hi there,
>> >> > I'm trying to install yt on the new Mac OSX 10.6, Snow Leopard and I
>> >> > have
>> >> > some problems. I run the install script modifying "wget" with "curl
>> -o"
>> >> > and
>> >> > the installation went ok. But then, when I type "yt" in my terminal I
>> >> > receive the "command not found error". Moreover, if I go the the bin
>> >> > directory of yt and type ./yt I enter the program but, trying to run
>> the
>> >> > first example I get this error message:
>> >> > this is what I type in the bin directory:
>> >> > ./yt halos src/yt-hg/tests/DD0010/moving7_0010/
>> >> >
>> >> > this is the error:
>> >> > Traceback (most recent call last):
>> >> > File "./yt", line 9, in <module>
>> >> > load_entry_point('yt==2.1stable', 'console_scripts', 'yt')()
>> >> > File
>> >> >
>> >> >
>> "/Users/matteotomassetti/yt-i386/src/yt-hg/yt/utilities/command_line.py",
>> >> > line 961, in run_main
>> >> > sys.exit(YT.main())
>> >> > File
>> "/Users/matteotomassetti/yt-i386/src/yt-hg/yt/utilities/cmdln.py",
>> >> > line 257, in main
>> >> > return self.cmd(args)
>> >> > File
>> "/Users/matteotomassetti/yt-i386/src/yt-hg/yt/utilities/cmdln.py",
>> >> > line 280, in cmd
>> >> > retval = self.onecmd(argv)
>> >> > File
>> "/Users/matteotomassetti/yt-i386/src/yt-hg/yt/utilities/cmdln.py",
>> >> > line 412, in onecmd
>> >> > return self._dispatch_cmd(handler, argv)
>> >> > File
>> "/Users/matteotomassetti/yt-i386/src/yt-hg/yt/utilities/cmdln.py",
>> >> > line 1100, in _dispatch_cmd
>> >> > return handler(argv[0], opts, *args)
>> >> > File
>> >> >
>> >> >
>> "/Users/matteotomassetti/yt-i386/src/yt-hg/yt/utilities/command_line.py",
>> >> > line 387, in do_halos
>> >> > hp = HP.HaloProfiler(arg,opts.halo_parameter_file,**kwargs)
>> >> > TypeError: __init__() got an unexpected keyword argument 'radius'
>> >> >
>> >> > so my questions are:
>> >> > 1) how can I call yt in any shell without going to the bin directory
>> of
>> >> > the
>> >> > program every time?
>> >> > 2) how can I fix the above bug?
>> >> >
>> >> > Please help me, yt looks really nice for what I have to do and I
>> really
>> >> > don't want to miss the chance to use it!
>> >> > Cheers,
>> >> > M.
>> >> >
>> >> > _______________________________________________
>> >> > yt-users mailing list
>> >> > yt-users at lists.spacepope.org
>> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >> >
>> >> > --
>> >> > Cameron Hummels
>> >> > PhD Candidate, Astronomy Department of Columbia University
>> >> > Public Outreach Director, Astronomy Department of Columbia University
>> >> > NASA IYA New York State Student Ambassador
>> >> > http://outreach.astro.columbia.edu
>> >> > PGP: 0x06F886E3
>> >> >
>> >> > _______________________________________________
>> >> > yt-users mailing list
>> >> > yt-users at lists.spacepope.org
>> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >> >
>> >> >
>> >> _______________________________________________
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>> >
>> >
>> >
>> > --
>> > Matteo Tomassetti
>> >
>> > _______________________________________________
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>> >
>> >
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>
>
>
> --
> Matteo Tomassetti

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