[yt-users] New yt installation problem

Dr. ABHIJIT BHATTACHARYYA b_abhijit2k at yahoo.co.in
Tue Jun 29 08:52:52 PDT 2010 

Hi Matt


Simply Fantastic advice. I moved the ipython dir to some other name and ran "iyt" 
which re-installed the .ipython dir and now there is no error. Thanks a lot.
Best 
Abhi



________________________________
From: Matthew Turk <matthewturk at gmail.com>
To: Discussion of the yt analysis package <yt-users at lists.spacepope.org>
Sent: Tue, 29 June, 2010 9:10:09 PM
Subject: Re: [yt-users] New yt installation problem

Hi Abhijit,

This looks just like incompatible IPython upgrades, or something along
those lines.  If you move the ~/.ipython directory out of the way, it
will re-initialize the default shell scripts, and that should be clear
-- I'd suggest "mv ~/.ipython ~/.ipython_old" and then that might
work.  Otherwise, I think things should still work, independent of the
IPython installation.  :)

Best,

Matt

On Tue, Jun 29, 2010 at 8:24 AM, Dr. ABHIJIT BHATTACHARYYA
<b_abhijit2k at yahoo.co.in> wrote:
> Hi Matt
> I did it. Now the error is different and I am pasting the warning message.
> Best
> Abhijit
>
>> iyt
> Your PyGtk has set_interactive(), so you can use the
> more stable single-threaded Gtk mode.
> See https://bugs.launchpad.net/ipython/+bug/270856
> System command list not initialized, probably the first run...
> running %rehashx to refresh the command list. Run %rehashx
> again to refresh command list (after installing new software etc.)
> ---------------------------------------------------------------------------
> AttributeError                            Traceback (most recent call last)
> /usr/local/lib/python2.6/site-packages/IPython/ipmaker.pyc in
> force_import(modname, force_reload)
>      61         reload(sys.modules[modname])
>      62     else:
> ---> 63         __import__(modname)
>      64
>      65
> /home/vega/.ipython/ipy_user_conf.py in <module>()
>     112     ip.ex('execfile("%s")' % os.path.expanduser(fname))
>     113
> --> 114 main()
>     115
>     116
> /home/vega/.ipython/ipy_user_conf.py in main()
>      31     # uncomment if you want to get ipython -p sh behaviour
>      32     # without having to use command line switches
> ---> 33     import ipy_profile_sh
>      34
>      35     # Configure your favourite editor?
> /usr/local/lib/python2.6/site-packages/IPython/Extensions/ipy_profile_sh.py
> in <module>()
>     268     ip.IP.runlines = _runlines
>     269
> --> 270 main()
>     271
>     272
> /usr/local/lib/python2.6/site-packages/IPython/Extensions/ipy_profile_sh.py
> in main()
>     131
>     132     ip.set_hook('input_prefilter', slash_prefilter_f)
> --> 133     extend_shell_behavior(ip)
>     134
>     135 class LastArgFinder:
> /usr/local/lib/python2.6/site-packages/IPython/Extensions/ipy_profile_sh.py
> in extend_shell_behavior(ip)
>     172     ip.IP.__sig__ = 0xa005
>     173     # mark the IPSHELL with this signature
> --> 174     ip.IP.user_ns['__builtins__'].__dict__['__sig__'] =
> ip.IP.__sig__
>     175
>     176     from IPython.Itpl import ItplNS
> AttributeError: 'dict' object has no attribute '__dict__'
> WARNING: Loading of ipy_user_conf failed.
>
> Welcome to yt!
> [~/.ipython]|1>
>
> ________________________________
> From: Matthew Turk <matthewturk at gmail.com>
> To: Discussion of the yt analysis package <yt-users at lists.spacepope.org>
> Sent: Tue, 29 June, 2010 8:44:54 PM
> Subject: Re: [yt-users] New yt installation problem
>
> Hi Abhijit,
>
> If you remove a single space from the front of line 33, which
> currently has 5 spaces, so that it only has 4, it should work.  This
> is the line that says "import ipy_profile_sh".
>
> Best,
>
> Matt
>
> On Tue, Jun 29, 2010 at 7:58 AM, Dr. ABHIJIT BHATTACHARYYA
> <b_abhijit2k at yahoo.co.in> wrote:
>> Hi Matt,
>> Here is the ipy_user_conf file.
>> Best
>> Abhijit
>>
>> ________________________________
>> From: Matthew Turk <matthewturk at gmail.com>
>> To: Discussion of the yt analysis package <yt-users at lists.spacepope.org>
>> Sent: Mon, 28 June, 2010 2:44:31 AM
>> Subject: Re: [yt-users] New yt installation problem
>>
>> Hi Abhijit,
>>
>> Sorry to hear that upgrade didn't work; very puzzling.  Glad to hear,
>> however, that the fresh install worked for you!  The error with
>> ipy_user_conf.py is confusing.  That's a file that should ship with
>> IPython, and which we don't make any modifications to.  Could you post
>> a slightly longer excerpt?  It seems that the issue might be with the
>> level of indentation.  Or, even attach ~/.ipython/ipy_user_conf.py?
>>
>> Thanks,
>>
>> Matt
>>
>> On Sun, Jun 27, 2010 at 1:24 PM, Dr. ABHIJIT BHATTACHARYYA
>> <b_abhijit2k at yahoo.co.in> wrote:
>>> Hi
>>>
>>> After failure with the canonical install script I foloowed instruction
>>> for
>>> the manual installation procedure. This method gave me success. However,
>>> invoking the "iyt" gives me following warning (seems not a clean run).
>>> The
>>> good news is that ignoring this warning, I could plot Enzo data using
>>> pylab.plot. Here one important point I noticed is that, in earlier
>>> version,
>>> I had to use pylab.show() command to plot on the screen after declaration
>>> of
>>> pylab.xlabel, pylab.ylabel and pylab.plot commands. Here, as soon as I
>>> use
>>> pylab.xlabel, I find graphics window on the screen which adpts all the
>>> subsequient command and hence do not require any pylab.show().
>>>
>>> For the warning, I checked all path is given in .cshrc. In
>>> ~/.ipython/ipy_user_conf.py file, the problem is given by "o =
>>> ip.options"
>>> line. Any handle?
>>> regs
>>> Abhijit
>>>
>>>> iyt
>>> Your PyGtk has set_interactive(), so you can use the
>>> more stable single-threaded Gtk mode.
>>> See https://bugs.launchpad.net/ipython/+bug/270856
>>>
>>>
>>> ---------------------------------------------------------------------------
>>> IndentationError                          Traceback (most recent call
>>> last)
>>>
>>> /usr/local/lib/python2.6/site-packages/IPython/ipmaker.pyc in
>>> force_import(modname, force_reload)
>>>      61         reload(sys.modules[modname])
>>>      62     else:
>>> ---> 63         __import__(modname)
>>>      64
>>>      65
>>>
>>> IndentationError: unindent does not match any outer indentation level
>>> (ipy_user_conf.py, line 52)
>>> WARNING: Loading of ipy_user_conf failed.
>>>
>>>
>>> Welcome to yt!
>>>
>>>
>>> In [1]:
>>>
>>>
>>> _______________________________________________
>>> yt-users mailing list
>>> yt-users at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>
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