[yt-users] h5py Issues

Brian Crosby crosby.bd at gmail.com
Fri Jul 23 11:04:16 PDT 2010


In attempting to make a series of projections with halos plotted using the public install of yt on Kraken, I've encountered an odd problem.  The job terminates without giving an apparent error statement in the output files, but rather ends with this cryptic (at least to me) mess:

h5py._stub.IOError  File "h5g.pyx", line 104, in h5py.h5g.GroupIter.__init__ (h5py/h5g.c:1248)
  File "h5g.pyx", line 104, in h5py.h5g.GroupIter.__init__ (h5py/h5g.c:1248)
: Addr overflow (Invalid arguments to routine: Address overflowed)
h5py._stub.IOError: Addr overflow (Invalid arguments to routine: Address overflowed)
    return func(*args, **kwds)
  File "h5g.pyx", line 317, in h5py.h5g.GroupID.get_num_objs (h5py/h5g.c:2482)
    return func(*args, **kwds)
  File "h5g.pyx", line 317, in h5py.h5g.GroupID.get_num_objs (h5py/h5g.c:2482)
    return func(*args, **kwds)
  File "h5g.pyx", line 317, in h5py.h5g.GroupID.get_num_objs (h5py/h5g.c:2482)
    return func(*args, **kwds)
  File "h5g.pyx", line 317, in h5py.h5g.GroupID.get_num_objs (h5py/h5g.c:2482)
  File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/h5py-1.2.1-py2.6-linux-x86_64.egg/h5py/_sync.py", line 88, in wrap

Does anyone have an idea what could be causing this problem?

Thanks,
Brian
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