[yt-users] yt1.6 compilation errors

[Agarwal, Shankar]

Hi, While building yt1.6 on Steele, I get 3 failure messages and a lot of failed messages...


compile options: '-Inumpy/core/src -Inumpy/core/include -I/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/include/python2.6 -c'
gcc: _configtest.c
gcc _configtest.o -o _configtest
_configtest.o: In function `main':
/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/src/numpy-1.3.0/_configtest.c:5: undefined reference to `exp'
collect2: ld returned 1 exit status
_configtest.o: In function `main':
/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/src/numpy-1.3.0/_configtest.c:5: undefined reference to `exp'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src -Inumpy/core/include -I/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/include/python2.6 -c'
gcc: _configtest.c
gcc _configtest.o -lm -o _configtest
_configtest
success!
removing: _configtest.c _configtest.o _configtest



C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src -Inumpy/core/include -I/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/include/python2.6 -c'
gcc: _configtest.c
gcc _configtest.o -o _configtest
_configtest
failure.


C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src -Inumpy/core/include -I/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/include/python2.6 -c'
gcc: _configtest.c
gcc _configtest.o -o _configtest
_configtest
failure.


creating .libs/testhdf5S.c
generating symbol list for `testhdf5'
sort: open failed: +2: No such file or directory
(cd .libs && gcc -c -fno-builtin "testhdf5S.c")
rm -f .libs/testhdf5S.c .libs/testhdf5.nm .libs/testhdf5.nmS .libs/testhdf5.nmT
gcc .libs/testhdf5S.o -ansi -O0 -fomit-frame-pointer -finline-functions -o .libs/testhdf5 testhdf5.o tarray.o tattr.o tconfig.o tfile.o tgenprop.o th5s.o tcoords.o theap.o titerate.o tmeta.o tmisc.o trefer.o trefstr.o tselect.o tskiplist.o ttime.o ttst.o tvltypes.o tvlstr.o  ./.libs/libh5test.so -L/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib/ -L/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib64/ ../src/.libs/libhdf5.so -lz -lm  -Wl,--rpath -Wl,/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64//lib -Wl,--rpath -Wl,/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib64/ -Wl,--rpath -Wl,/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib/
creating testhdf5






Could they be the reason for with the following...

[agarwa23 at tg-steele ~]$ python
Python 2.6.3 (r263:75183, Feb  8 2010, 10:48:42) 
[GCC 4.4.0] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> from yt.mods import *
yt.lagos   INFO       2010-02-08 11:19:35,117 No HDF4 support
yt.lagos   WARNING    2010-02-08 11:19:35,256 No h5py. Data serialization disabled.
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/autohome/u118/agarwa23/enzo/src/yt/yt/mods.py", line 32, in <module>
    import yt.lagos as lagos
  File "/autohome/u118/agarwa23/enzo/src/yt/yt/lagos/__init__.py", line 47, in <module>
    from yt.arraytypes import *
  File "/autohome/u118/agarwa23/enzo/src/yt/yt/arraytypes.py", line 30, in <module>
    import numpy as na
  File "/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/__init__.py", line 130, in <module>
    import add_newdocs
  File "/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/add_newdocs.py", line 9, in <module>
    from lib import add_newdoc
  File "/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/lib/__init__.py", line 13, in <module>
    from polynomial import *
  File "/home/ba01/u118/agarwa23/enzo/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/lib/polynomial.py", line 11, in <module>
    import numpy.core.numeric as NX
AttributeError: 'module' object has no attribute 'core'



Any help would be great. My python is working fine. Only when it comes to importing modules, it can't find them.

I had a successfully running yt1.5. Then I decided to update it. But I get the above errors. I removed my older yt1.5 and checked out a brand new yt1.6. But get the same errors. Thanks Matt, for helping with this earlier.

Shankar