[yt-users] amr_utils

Agarwal, Shankar sagarwal at ku.edu
Sat Feb 6 11:28:55 PST 2010


Hi Matt,


My modules are 

  1) java/1.6.0_14   2) mpfr/2.4.1      3) gcc/4.4.0



My yt build failed due to Mercurial...

Downloading http://mercurial.selenic.com/release/mercurial-1.4.3.tar.gz
Processing mercurial-1.4.3.tar.gz
Running mercurial-1.4.3/setup.py -q bdist_egg --dist-dir /tmp/easy_install-lXCfn0/mercurial-1.4.3/egg-dist-tmp-SHK1v5
Traceback (most recent call last):
  File "/home/ba01/u118/agarwa23/enzo1.5/src/yt/doc/yt-x86_64/bin/easy_install-2.6", line 8, in <module>
    load_entry_point('setuptools==0.6c9', 'console_scripts', 'easy_install-2.6')()




Should I set INST_HG = 0 ?

INST_WXPYTHON   = 1 so I will  be installing wxPython
INST_ZLIB       = 1 so I will  be installing zlib
INST_HG         = 1 so I will  be installing Mercurial
INST_TRAITS     = 0 so I won't be installing Traits
 

Shankar




-----Original Message-----
From: yt-users-bounces at lists.spacepope.org on behalf of Matthew Turk
Sent: Sat 2/6/2010 12:02 PM
To: Discussion of the yt analysis package
Subject: Re: [yt-users] amr_utils
 
Hi Shankar,

This thread is from when you installed yt on Steele several months ago.

http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2009-November/000234.html

Looks like back then you had to swap out intel for GNU back then, too.
 If you do that now, and wipe/rebuild as I sent you, it should work
out okay.

Best,

Matt

On Sat, Feb 6, 2010 at 9:56 AM, Matthew Turk <matthewturk at gmail.com> wrote:
> No, this looks more like there are issues with your compiler, and
> components of yt being compiled with Intel.  Compiling yt with
> anything other than GNU is tricky.
>
> You can try flushing it out with this:
>
> find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v
> find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v
>
> and then re-build.  Make sure that if you are on a machine with
> modules you have the GNU modules loaded, not the Intel modules before
> this.
>
> -Matt
>
> On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar <sagarwal at ku.edu> wrote:
>> Ok. But now I get this...
>>
>> Traceback (most recent call last):
>>  File "visual.py", line 6, in <module>
>>    from yt.mods import *
>>  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module>
>>    import yt.lagos as lagos
>>  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 66, in <module>
>>    import PointCombine
>> ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/PointCombine.so: undefined symbol: _intel_fast_memset
>>
>>
>> Do you think my older version is somehow clashing with the new one?
>>
>> Shankar
>>
>>
>>
>> -----Original Message-----
>> From: yt-users-bounces at lists.spacepope.org on behalf of Matthew Turk
>> Sent: Sat 2/6/2010 11:46 AM
>> To: Discussion of the yt analysis package
>> Subject: Re: [yt-users] amr_utils
>>
>> Hi Shankar,
>>
>> Looks like you're inside an enzo svn checkout.  To update your entire
>> enzo+yt source tree (which, because yt is included via svn:externals)
>> you should do:
>>
>> /autohome/u118/agarwa23/enzo1.5/
>> svn up
>> cd src/yt
>> python2.6 setup.py build_ext -i
>>
>> This will (in order) put you in the root enzo directory, update your
>> subversion checkout (which may update your Enzo tree to reflect recent
>> bug fixes and so on) of both Enzo+yt, and then make sure that all of
>> the extensions -- of which amr_utils is one! -- are built.  The last
>> step is the most important, and you should probably run this every
>> time you svn up yt.  I'll make a note of this in the documentation.
>>
>> -Matt
>>
>> On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal at ku.edu> wrote:
>>> Hi,
>>>
>>> I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
>>>
>>> I just tried to run the script...
>>>
>>> http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
>>>
>>> on my dataset. But I am getting this error...
>>>
>>> Traceback (most recent call last):
>>>  File "visual.py", line 6, in <module>
>>>    from yt.mods import *
>>>  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module>
>>>    import yt.lagos as lagos
>>>  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module>
>>>    import yt.amr_utils as amr_utils
>>> ImportError: No module named amr_utils
>>> _______________________________________________
>>> yt-users mailing list
>>> yt-users at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>
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>
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