[yt-users] IYT gives problem after updation of system
Dr. ABHIJIT BHATTACHARYYA
b_abhijit2k at yahoo.co.in
Sat Aug 7 14:22:46 PDT 2010
Hi
I upgraded my system to OpenSUSE 11.3. I kept 'iyt' and 'enzo' in '/usr/local'
while I only upgraded '/' while '/' and '/usr/local' are two different
partitions. Now Enzo is working while iyt gives following error.
$> iyt
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.5, library is 1.8.4
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
-------------------
HDF5 Version: 1.8.4-patch1
Configured on: Sat May 29 02:41:00 IST 2010
Configured by: root at Pakudidi
Configure mode: production
Host system: x86_64-unknown-linux-gnu
Uname information: Linux Pakudidi 2.6.31-rc9-7-default #1 SMP
2009-09-08 18:49:15 +0200 x86_64 x86_64 x86_64 GNU/Linux
Byte sex: little-endian
Libraries:
Installation point: /usr/local
Compiling Options:
------------------
Compilation Mode: production
C Compiler: /usr/bin/gcc (gcc-4.4.1)
CFLAGS:
H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef
-Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align
-Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes
-Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs
-Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute
-Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2
-Wunreachable-code -Wendif-labels -Wdeclaration-after-statement
-Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self
-Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros
-Wunsafe-loop-optimizations -Wc++-compat -Wstrict-overflow -Wlogical-op
-Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384
-Wpacked-bitfield-compat -O0 -fomit-frame-pointer -finline-functions
AM_CFLAGS:
CPPFLAGS:
H5_CPPFLAGS: -D_POSIX_SOURCE -DNDEBUG -UH5_DEBUG_API
AM_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-D_FILE_OFFSET_BITS=64 -D_BSD_SOURCE
Shared Libraries: yes
Static Libraries: yes
Statically Linked Executables: no
LDFLAGS:
AM_LDFLAGS:
Extra libraries: -lz -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Languages:
----------
Fortran: yes
Fortran Compiler: ifort
Fortran Flags:
H5 Fortran Flags: -O3
AM Fortran Flags: -fPIC
C++: yes
C++ Compiler: g++
C++ Flags:
H5 C++ Flags:
AM C++ Flags:
Features:
---------
Parallel HDF5: no
High Level library: yes
Threadsafety: no
Default API Mapping: v18
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib)
I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
GPFS: no
Strict File Format Checks: no
Optimization Instrumentation: no
Linux Large File Support (LFS): yes
Bye...
Abort
$>
Can you help me how to proceed?
Thanks and Regs
Abhijit
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