[yt-users] yt on verne

[Stephen Skory]

Hi Matt,

I now have these lines in site.cfg for numpy:

[DEFAULT]
library_dirs = /usr/lib64
include_dirs = /nics/c/home/yt-verne/include/python2.6, numpy/core/include, numpy/core/src

and it is no longer complaining about the libraries, however it appears that it isn't including the Python header files correctly? I've compared this part of the install log to an install on Ranger, and these lines seem to be functionally equivalent in terms of the libs and includes listed.

Thanks!

--------------

building 'numpy.linalg.lapack_lite' extension
compiling C sources
C compiler: cc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

creating build/temp.linux-x86_64-2.6/numpy/linalg
compile options: '-DNO_ATLAS_INFO=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.6/numpy/core/inclu
de/numpy -Inumpy/core/src -Inumpy/core/include -I/nics/c/home/sskory/yt-verne/include/python2.6 -c'
cc: numpy/linalg/python_xerbla.c
cc: numpy/linalg/lapack_litemodule.c
/usr/bin/gfortran -Wall -L/nics/c/home/sskory/yt-verne/lib/ -L/nics/c/home/sskory/yt-verne/lib64/ buil
d/temp.linux-x86_64-2.6/numpy/linalg/lapack_litemodule.o build/temp.linux-x86_64-2.6/numpy/linalg/pyth
on_xerbla.o -L/usr/lib64 -llapack -lblas -lgfortran -o build/lib.linux-x86_64-2.6/numpy/linalg/lapack_
lite.so
build/temp.linux-x86_64-2.6/numpy/linalg/lapack_litemodule.o: In function `initlapack_lite':
/nics/c/home/sskory/yt-verne/src/numpy-1.2.1/numpy/linalg/lapack_litemodule.c:827: undefined reference
 to `Py_InitModule4_64'
build/temp.linux-x86_64-2.6/numpy/linalg/lapack_litemodule.o: In function `_import_array':
/nics/c/home/sskory/yt-verne/src/numpy-1.2.1/build/src.linux-x86_64-2.6/numpy/core/include/numpy/__mul
tiarray_api.h:960: undefined reference to `PyImport_ImportModule'
/nics/c/home/sskory/yt-verne/src/numpy-1.2.1/build/src.linux-x86_64-2.6/numpy/core/include/numpy/__mul
tiarray_api.h:963: undefined reference to `PyObject_GetAttrString'
/nics/c/home/sskory/yt-verne/src/numpy-1.2.1/build/src.linux-x86_64-2.6/numpy/core/include/numpy/__mul
tiarray_api.h:965: undefined reference to `PyCObject_Type'
/nics/c/home/sskory/yt-verne/src/numpy-1.2.1/build/src.linux-x86_64-2.6/numpy/core/include/numpy/__mul
tiarray_api.h:973: undefined reference to `PyExc_RuntimeError'
/nics/c/home/sskory/yt-verne/src/numpy-1.2.1/build/src.linux-x86_64-2.6/numpy/core/include/numpy/__mul
tiarray_api.h:973: undefined reference to `PyErr_Format'
build/temp.linux-x86_64-2.6/numpy/linalg/lapack_litemodule.o: In function `initlapack_lite':
/nics/c/home/sskory/yt-verne/src/numpy-1.2.1/numpy/linalg/lapack_litemodule.c:830: undefined reference
 to `PyErr_Print'
(and so on...)

 _______________________________________________________
sskory at physics.ucsd.edu           o__  Stephen Skory
http://physics.ucsd.edu/~sskory/ _.>/ _Graduate Student
________________________________(_)_\(_)_______________