[yt-svn] commit/yt: 4 new changesets
commits-noreply at bitbucket.org
commits-noreply at bitbucket.org
Wed May 3 21:38:03 PDT 2017
4 new commits in yt:
https://bitbucket.org/yt_analysis/yt/commits/a20a7c9a7a72/
Changeset: a20a7c9a7a72
User: mzingale
Date: 2017-05-03 21:42:21+00:00
Summary: some AMReX additions to docs
Affected #: 3 files
diff -r b7d2eda68cece815b0332beb2aa42851b23f2dc4 -r a20a7c9a7a721fc74ce1c6d45af0aafe189133f8 doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -271,16 +271,18 @@
.. _loading-orion-data:
-BoxLib Data
+AMReX / BoxLib Data
-----------
-yt has been tested with BoxLib data generated by Orion, Nyx, Maestro, Castro,
-and WarpX. Currently it is cared for by a combination of Andrew Myers, Chris
-Malone, Matthew Turk, and Mike Zingale.
+AMReX and BoxLib share a frontend (currently named `boxlib`), since
+the file format is identical. yt has been tested with AMReX/BoxLib
+data generated by Orion, Nyx, Maestro, Castro, IAMR, and
+WarpX. Currently it is cared for by a combination of Andrew Myers,
+Chris Malone, Matthew Turk, and Mike Zingale.
-To load a BoxLib dataset, you can use the ``yt.load`` command on
+To load an AMReX/BoxLib dataset, you can use the ``yt.load`` command on
the plotfile directory name. In general, you must also have the
-``inputs`` file in the base directory, but Maestro, Castro, and WarpX will get
+``inputs`` file in the base directory, but Maestro, Castro, Nyx, and WarpX will get
all the necessary parameter information from the ``job_info`` file in
the plotfile directory. For instance, if you were in a
directory with the following files:
@@ -308,7 +310,7 @@
import yt
ds = yt.load("pltgmlcs5600")
-For Maestro, Castro, and WarpX, you would not need the ``inputs`` file, and you
+For Maestro, Castro, Nyx, and WarpX, you would not need the ``inputs`` file, and you
would have a ``job_info`` file in the plotfile directory.
.. rubric:: Caveats
@@ -316,8 +318,8 @@
* yt does not read the Maestro base state (although you can have Maestro
map it to a full Cartesian state variable before writing the plotfile
to get around this). E-mail the dev list if you need this support.
-* yt supports BoxLib particle data stored in the standard format used
- by Nyx and WarpX. It currently does not support the ASCII particle
+* yt supports AMReX/BoxLib particle data stored in the standard format used
+ by Nyx and WarpX, and optionally Castro. It currently does not support the ASCII particle
data used by Maestro and Castro.
* For Maestro, yt aliases either "tfromp" or "tfromh to" ``temperature``
depending on the value of the ``use_tfromp`` runtime parameter.
@@ -328,7 +330,7 @@
Viewing raw fields in WarpX
^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Most BoxLib codes output cell-centered data. If the underlying discretization
+Most AMReX/BoxLib codes output cell-centered data. If the underlying discretization
is not cell-centered, then fields are typically averaged to cell centers before
they are written to plot files for visualization. WarpX, however, has the option
to output the raw (i.e., not averaged to cell centers) data as well. If you
diff -r b7d2eda68cece815b0332beb2aa42851b23f2dc4 -r a20a7c9a7a721fc74ce1c6d45af0aafe189133f8 doc/source/reference/api/api.rst
--- a/doc/source/reference/api/api.rst
+++ b/doc/source/reference/api/api.rst
@@ -190,7 +190,7 @@
~yt.frontends.athena.fields.AthenaFieldInfo
~yt.frontends.athena.io.IOHandlerAthena
-Boxlib
+AMReX/Boxlib
^^^^^^
.. autosummary::
diff -r b7d2eda68cece815b0332beb2aa42851b23f2dc4 -r a20a7c9a7a721fc74ce1c6d45af0aafe189133f8 yt/frontends/boxlib/io.py
--- a/yt/frontends/boxlib/io.py
+++ b/yt/frontends/boxlib/io.py
@@ -1,5 +1,5 @@
"""
-Boxlib data-file handling functions
+AMReX/Boxlib data-file handling functions
https://bitbucket.org/yt_analysis/yt/commits/7f88a028a1d3/
Changeset: 7f88a028a1d3
User: mzingale
Date: 2017-05-03 21:44:01+00:00
Summary: fix markdown
Affected #: 1 file
diff -r a20a7c9a7a721fc74ce1c6d45af0aafe189133f8 -r 7f88a028a1d38e22296c99b1b1a5b7b646fab238 doc/source/reference/api/api.rst
--- a/doc/source/reference/api/api.rst
+++ b/doc/source/reference/api/api.rst
@@ -191,7 +191,7 @@
~yt.frontends.athena.io.IOHandlerAthena
AMReX/Boxlib
-^^^^^^
+^^^^^^^^^^^^
.. autosummary::
https://bitbucket.org/yt_analysis/yt/commits/acb6cfcf9b3a/
Changeset: acb6cfcf9b3a
User: mzingale
Date: 2017-05-04 00:01:41+00:00
Summary: updates to address comments in the PR:
-- BoxLib and AMReX outputs are _nearly_ identical
-- update contrib list
-- fix formatting
Affected #: 1 file
diff -r 7f88a028a1d38e22296c99b1b1a5b7b646fab238 -r acb6cfcf9b3a267849afc70a8738e0fc4383428a doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -272,13 +272,13 @@
.. _loading-orion-data:
AMReX / BoxLib Data
------------
+-------------------
AMReX and BoxLib share a frontend (currently named `boxlib`), since
-the file format is identical. yt has been tested with AMReX/BoxLib
+the file format nearly identical. yt has been tested with AMReX/BoxLib
data generated by Orion, Nyx, Maestro, Castro, IAMR, and
WarpX. Currently it is cared for by a combination of Andrew Myers,
-Chris Malone, Matthew Turk, and Mike Zingale.
+Matthew Turk, and Mike Zingale.
To load an AMReX/BoxLib dataset, you can use the ``yt.load`` command on
the plotfile directory name. In general, you must also have the
https://bitbucket.org/yt_analysis/yt/commits/57522d384760/
Changeset: 57522d384760
User: ngoldbaum
Date: 2017-05-04 04:37:51+00:00
Summary: Merge pull request #1365 from zingale/master
add some AMReX references along with BoxLib
Affected #: 3 files
diff -r fd7d0719479338e85549f96891d26ce9a7aaeffe -r 57522d3847609648ece6c2238d2e9d76c8037d3b doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -271,16 +271,18 @@
.. _loading-orion-data:
-BoxLib Data
------------
+AMReX / BoxLib Data
+-------------------
-yt has been tested with BoxLib data generated by Orion, Nyx, Maestro, Castro,
-and WarpX. Currently it is cared for by a combination of Andrew Myers, Chris
-Malone, Matthew Turk, and Mike Zingale.
+AMReX and BoxLib share a frontend (currently named `boxlib`), since
+the file format nearly identical. yt has been tested with AMReX/BoxLib
+data generated by Orion, Nyx, Maestro, Castro, IAMR, and
+WarpX. Currently it is cared for by a combination of Andrew Myers,
+Matthew Turk, and Mike Zingale.
-To load a BoxLib dataset, you can use the ``yt.load`` command on
+To load an AMReX/BoxLib dataset, you can use the ``yt.load`` command on
the plotfile directory name. In general, you must also have the
-``inputs`` file in the base directory, but Maestro, Castro, and WarpX will get
+``inputs`` file in the base directory, but Maestro, Castro, Nyx, and WarpX will get
all the necessary parameter information from the ``job_info`` file in
the plotfile directory. For instance, if you were in a
directory with the following files:
@@ -308,7 +310,7 @@
import yt
ds = yt.load("pltgmlcs5600")
-For Maestro, Castro, and WarpX, you would not need the ``inputs`` file, and you
+For Maestro, Castro, Nyx, and WarpX, you would not need the ``inputs`` file, and you
would have a ``job_info`` file in the plotfile directory.
.. rubric:: Caveats
@@ -316,8 +318,8 @@
* yt does not read the Maestro base state (although you can have Maestro
map it to a full Cartesian state variable before writing the plotfile
to get around this). E-mail the dev list if you need this support.
-* yt supports BoxLib particle data stored in the standard format used
- by Nyx and WarpX. It currently does not support the ASCII particle
+* yt supports AMReX/BoxLib particle data stored in the standard format used
+ by Nyx and WarpX, and optionally Castro. It currently does not support the ASCII particle
data used by Maestro and Castro.
* For Maestro, yt aliases either "tfromp" or "tfromh to" ``temperature``
depending on the value of the ``use_tfromp`` runtime parameter.
@@ -328,7 +330,7 @@
Viewing raw fields in WarpX
^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Most BoxLib codes output cell-centered data. If the underlying discretization
+Most AMReX/BoxLib codes output cell-centered data. If the underlying discretization
is not cell-centered, then fields are typically averaged to cell centers before
they are written to plot files for visualization. WarpX, however, has the option
to output the raw (i.e., not averaged to cell centers) data as well. If you
diff -r fd7d0719479338e85549f96891d26ce9a7aaeffe -r 57522d3847609648ece6c2238d2e9d76c8037d3b doc/source/reference/api/api.rst
--- a/doc/source/reference/api/api.rst
+++ b/doc/source/reference/api/api.rst
@@ -190,8 +190,8 @@
~yt.frontends.athena.fields.AthenaFieldInfo
~yt.frontends.athena.io.IOHandlerAthena
-Boxlib
-^^^^^^
+AMReX/Boxlib
+^^^^^^^^^^^^
.. autosummary::
diff -r fd7d0719479338e85549f96891d26ce9a7aaeffe -r 57522d3847609648ece6c2238d2e9d76c8037d3b yt/frontends/boxlib/io.py
--- a/yt/frontends/boxlib/io.py
+++ b/yt/frontends/boxlib/io.py
@@ -1,5 +1,5 @@
"""
-Boxlib data-file handling functions
+AMReX/Boxlib data-file handling functions
Repository URL: https://bitbucket.org/yt_analysis/yt/
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