[yt-svn] commit/yt: 7 new changesets
commits-noreply at bitbucket.org
commits-noreply at bitbucket.org
Tue Nov 25 19:18:18 PST 2014
7 new commits in yt:
https://bitbucket.org/yt_analysis/yt/commits/679259888f9e/
Changeset: 679259888f9e
Branch: yt
User: mzingale
Date: 2014-11-25 02:09:25+00:00
Summary: some additions and aliases for Maestro and Castro
Affected #: 1 file
diff -r a4ada3e56dfb45de2e6a85c5069cf4b11d7238f0 -r 679259888f9e48829c9683d52fc5e5bde8704f10 yt/frontends/boxlib/fields.py
--- a/yt/frontends/boxlib/fields.py
+++ b/yt/frontends/boxlib/fields.py
@@ -153,17 +153,17 @@
("grav_z", ("cm/s**2", [],
r"\left(\mathbf{g} \cdot \mathbf{e}\right)_z")),
("pressure", ("dyne/cm**2", [], r"p")),
- ("kineng", ("erg/cm**3", [], r"\frac{1}{2}\rho|\mathbf{U}|**2")),
+ ("kineng", ("erg/cm**3", ["kinetic_energy"], r"\frac{1}{2}\rho|\mathbf{U}|**2")),
("soundspeed", ("cm/s", ["sound_speed"], "Sound Speed")),
("Machnumber", ("", ["mach_number"], "Mach Number")),
("entropy", ("erg/(g*K)", ["entropy"], r"s")),
("magvort", ("1/s", ["vorticity_magnitude"],
r"|\nabla \times \mathbf{U}|")),
- ("divu", ("1/s", [], r"\nabla \cdot \mathbf{U}")),
+ ("divu", ("1/s", ["velocity_divergence"], r"\nabla \cdot \mathbf{U}")),
("eint_E", ("erg/g", [], r"e(E,U)")),
("eint_e", ("erg/g", [], r"e")),
("magvel", ("cm/s", ["velocity_magnitude"], r"|\mathbf{U}|")),
- ("radvel", ("cm/s", [],
+ ("radvel", ("cm/s", ["radial_velocity"],
r"\left(\mathbf{U} \cdot \mathbf{e}\right)_r")),
("magmom", ("g*cm/s", ["momentum_magnitude"], r"|\rho \mathbf{U}|")),
("maggrav", ("cm/s**2", [], r"|\mathbf{g}|")),
@@ -201,7 +201,8 @@
("z_vel", ("cm/s", ["velocity_z"], r"\tilde{w}")),
("magvel", ("cm/s", ["velocity_magnitude"],
r"|\tilde{\mathbf{U}} + w_0 \mathbf{e}_r|")),
- ("radial_velocity", ("cm/s", [], r"U\cdot e_r")),
+ ("radial_velocity", ("cm/s", ["radial_velocity"], r"U\cdot e_r")),
+ ("circum_velocity", ("cm/s", ["tangential_velocity"], r"U\cdot e_r")),
("tfromp", ("K", [], "T(\\rho,p,X)")),
("tfromh", ("K", [], "T(\\rho,h,X)")),
("Machnumber", ("", ["mach_number"], "Mach Number")),
https://bitbucket.org/yt_analysis/yt/commits/b8d0b50674c4/
Changeset: b8d0b50674c4
Branch: yt
User: mzingale
Date: 2014-11-25 02:12:44+00:00
Summary: fix display name for circumferential velocity
Affected #: 1 file
diff -r 679259888f9e48829c9683d52fc5e5bde8704f10 -r b8d0b50674c481a0d651d419a63813a71094ccb4 yt/frontends/boxlib/fields.py
--- a/yt/frontends/boxlib/fields.py
+++ b/yt/frontends/boxlib/fields.py
@@ -202,7 +202,7 @@
("magvel", ("cm/s", ["velocity_magnitude"],
r"|\tilde{\mathbf{U}} + w_0 \mathbf{e}_r|")),
("radial_velocity", ("cm/s", ["radial_velocity"], r"U\cdot e_r")),
- ("circum_velocity", ("cm/s", ["tangential_velocity"], r"U\cdot e_r")),
+ ("circum_velocity", ("cm/s", ["tangential_velocity"], r"U - U\cdot e_r")),
("tfromp", ("K", [], "T(\\rho,p,X)")),
("tfromh", ("K", [], "T(\\rho,h,X)")),
("Machnumber", ("", ["mach_number"], "Mach Number")),
https://bitbucket.org/yt_analysis/yt/commits/583e036b2a39/
Changeset: 583e036b2a39
Branch: yt
User: mzingale
Date: 2014-11-25 14:58:16+00:00
Summary: merge
Affected #: 1 file
diff -r a0944e034d1db25d5f5679ef7eb57f1dc5159d78 -r 583e036b2a398faf464d046cd03b5d1e1312e97e yt/frontends/boxlib/data_structures.py
--- a/yt/frontends/boxlib/data_structures.py
+++ b/yt/frontends/boxlib/data_structures.py
@@ -249,6 +249,7 @@
grid_counter += ngrids
# already read the filenames above...
self.float_type = 'float64'
+ self.max_level = self.grid_levels.max()
def _cache_endianness(self, test_grid):
"""
https://bitbucket.org/yt_analysis/yt/commits/1a0ac6e6ded4/
Changeset: 1a0ac6e6ded4
Branch: yt
User: mzingale
Date: 2014-11-25 14:58:37+00:00
Summary: merge
Affected #: 2 files
diff -r b8d0b50674c481a0d651d419a63813a71094ccb4 -r 1a0ac6e6ded44238172d3e926385c5da926b1f15 yt/frontends/art/fields.py
--- a/yt/frontends/art/fields.py
+++ b/yt/frontends/art/fields.py
@@ -37,7 +37,7 @@
("YMomentumDensity", (mom_units, ["momentum_y"], None)),
("ZMomentumDensity", (mom_units, ["momentum_z"], None)),
("Pressure", ("", ["pressure"], None)), # Unused
- ("Gamma", ("", "gamma", None)),
+ ("Gamma", ("", ["gamma"], None)),
("GasEnergy", (en_units, ["thermal_energy"], None)),
("MetalDensitySNII", (rho_units, ["metal_ii_density"], None)),
("MetalDensitySNIa", (rho_units, ["metal_ia_density"], None)),
diff -r b8d0b50674c481a0d651d419a63813a71094ccb4 -r 1a0ac6e6ded44238172d3e926385c5da926b1f15 yt/frontends/boxlib/data_structures.py
--- a/yt/frontends/boxlib/data_structures.py
+++ b/yt/frontends/boxlib/data_structures.py
@@ -249,6 +249,7 @@
grid_counter += ngrids
# already read the filenames above...
self.float_type = 'float64'
+ self.max_level = self.grid_levels.max()
def _cache_endianness(self, test_grid):
"""
https://bitbucket.org/yt_analysis/yt/commits/b0022540afa8/
Changeset: b0022540afa8
Branch: yt
User: mzingale
Date: 2014-11-25 15:00:13+00:00
Summary: somehow got this change commited -- back it out
Affected #: 1 file
diff -r 1a0ac6e6ded44238172d3e926385c5da926b1f15 -r b0022540afa89e5bb9c63848d8815df316018140 yt/frontends/boxlib/data_structures.py
--- a/yt/frontends/boxlib/data_structures.py
+++ b/yt/frontends/boxlib/data_structures.py
@@ -249,7 +249,6 @@
grid_counter += ngrids
# already read the filenames above...
self.float_type = 'float64'
- self.max_level = self.grid_levels.max()
def _cache_endianness(self, test_grid):
"""
https://bitbucket.org/yt_analysis/yt/commits/ee6e06dc25da/
Changeset: ee6e06dc25da
Branch: yt
User: mzingale
Date: 2014-11-25 16:16:47+00:00
Summary: make some strings raw because \nabla is being interpreted as a newline
Affected #: 1 file
diff -r b0022540afa89e5bb9c63848d8815df316018140 -r ee6e06dc25dacb650139d45d8947028676281f1b yt/frontends/boxlib/fields.py
--- a/yt/frontends/boxlib/fields.py
+++ b/yt/frontends/boxlib/fields.py
@@ -211,16 +211,16 @@
("deltaT", ("", [], "[T(\\rho,h,X) - T(\\rho,p,X)]/T(\\rho,h,X)")),
("deltagamma", ("", [], "\Gamma_1 - \overline{\Gamma_1}")),
("deltap", ("", [], "[p(\\rho,h,X) - p_0] / p_0")),
- ("divw0", ("1/s", [], "\nabla \cdot \mathbf{w}_0")),
+ ("divw0", ("1/s", [], r"\nabla \cdot \mathbf{w}_0")),
# Specific entropy
("entropy", ("erg/(g*K)", ["entropy"], "s")),
("entropypert", ("", [], "[s - \overline{s}] / \overline{s}")),
("enucdot", ("erg/(g*s)", [], "\dot{\epsilon_{nuc}}")),
("Hext", ("erg/(g*s)", [], "H_{ext}")),
# Perturbational pressure grad
- ("gpi_x", ("dyne/cm**3", [], "\left(\nabla\pi\right)_x")),
- ("gpi_y", ("dyne/cm**3", [], "\left(\nabla\pi\right)_y")),
- ("gpi_z", ("dyne/cm**3", [], "\left(\nabla\pi\right)_z")),
+ ("gpi_x", ("dyne/cm**3", [], r"\left(\nabla\pi\right)_x")),
+ ("gpi_y", ("dyne/cm**3", [], r"\left(\nabla\pi\right)_y")),
+ ("gpi_z", ("dyne/cm**3", [], r"\left(\nabla\pi\right)_z")),
("h", ("erg/g", [], "h")),
("h0", ("erg/g", [], "h_0")),
# Momentum cannot be computed because we need to include base and
@@ -241,7 +241,7 @@
("sponge", ("", [], None)),
("tpert", ("K", [], "T - \overline{T}")),
# Again, base state -- so we can't compute ourselves.
- ("vort", ("1/s", ["vorticity_magnitude"], "|\nabla\times\tilde{U}|")),
+ ("vort", ("1/s", ["vorticity_magnitude"], r"|\nabla\times\tilde{U}|")),
# Base state
("w0_x", ("cm/s", [], "(w_0)_x")),
("w0_y", ("cm/s", [], "(w_0)_y")),
https://bitbucket.org/yt_analysis/yt/commits/dc2ade033502/
Changeset: dc2ade033502
Branch: yt
User: mzingale
Date: 2014-11-26 00:46:24+00:00
Summary: more display name fixes now that it is easy to see them on the field list table
Affected #: 1 file
diff -r ee6e06dc25dacb650139d45d8947028676281f1b -r dc2ade03350286b7e54436ac100da00d086c24ae yt/frontends/boxlib/fields.py
--- a/yt/frontends/boxlib/fields.py
+++ b/yt/frontends/boxlib/fields.py
@@ -147,13 +147,13 @@
("rho_e", ("erg/cm**3", [], r"\rho e")),
("Temp", ("K", ["temperature"], r"T")),
("grav_x", ("cm/s**2", [],
- r"\left(\mathbf{g} \cdot \mathbf{e}\right)_x")),
+ r"\mathbf{g} \cdot \mathbf{e}_x")),
("grav_y", ("cm/s**2", [],
- r"\left(\mathbf{g} \cdot \mathbf{e}\right)_y")),
+ r"\mathbf{g} \cdot \mathbf{e}_y")),
("grav_z", ("cm/s**2", [],
- r"\left(\mathbf{g} \cdot \mathbf{e}\right)_z")),
+ r"\mathbf{g} \cdot \mathbf{e}_z")),
("pressure", ("dyne/cm**2", [], r"p")),
- ("kineng", ("erg/cm**3", ["kinetic_energy"], r"\frac{1}{2}\rho|\mathbf{U}|**2")),
+ ("kineng", ("erg/cm**3", ["kinetic_energy"], r"\frac{1}{2}\rho|\mathbf{U}|^2")),
("soundspeed", ("cm/s", ["sound_speed"], "Sound Speed")),
("Machnumber", ("", ["mach_number"], "Mach Number")),
("entropy", ("erg/(g*K)", ["entropy"], r"s")),
@@ -164,10 +164,10 @@
("eint_e", ("erg/g", [], r"e")),
("magvel", ("cm/s", ["velocity_magnitude"], r"|\mathbf{U}|")),
("radvel", ("cm/s", ["radial_velocity"],
- r"\left(\mathbf{U} \cdot \mathbf{e}\right)_r")),
- ("magmom", ("g*cm/s", ["momentum_magnitude"], r"|\rho \mathbf{U}|")),
+ r"\mathbf{U} \cdot \mathbf{e}_r")),
+ ("magmom", ("g*cm/s", ["momentum_magnitude"], r"\rho |\mathbf{U}|")),
("maggrav", ("cm/s**2", [], r"|\mathbf{g}|")),
- ("phiGrav", ("erg/g", [], r"|\Phi|")),
+ ("phiGrav", ("erg/g", [], r"\Phi")),
)
def setup_fluid_fields(self):
@@ -201,13 +201,13 @@
("z_vel", ("cm/s", ["velocity_z"], r"\tilde{w}")),
("magvel", ("cm/s", ["velocity_magnitude"],
r"|\tilde{\mathbf{U}} + w_0 \mathbf{e}_r|")),
- ("radial_velocity", ("cm/s", ["radial_velocity"], r"U\cdot e_r")),
+ ("radial_velocity", ("cm/s", ["radial_velocity"], r"\mathbf{U}\cdot \mathbf{e}_r")),
("circum_velocity", ("cm/s", ["tangential_velocity"], r"U - U\cdot e_r")),
("tfromp", ("K", [], "T(\\rho,p,X)")),
("tfromh", ("K", [], "T(\\rho,h,X)")),
- ("Machnumber", ("", ["mach_number"], "Mach Number")),
+ ("Machnumber", ("", ["mach_number"], "M")),
("S", ("1/s", [], None)),
- ("ad_excess", ("", [], "Adiabatic Excess")),
+ ("ad_excess", ("", [], r"\nabla - \nabla_\mathrm{ad}")),
("deltaT", ("", [], "[T(\\rho,h,X) - T(\\rho,p,X)]/T(\\rho,h,X)")),
("deltagamma", ("", [], "\Gamma_1 - \overline{\Gamma_1}")),
("deltap", ("", [], "[p(\\rho,h,X) - p_0] / p_0")),
@@ -215,7 +215,7 @@
# Specific entropy
("entropy", ("erg/(g*K)", ["entropy"], "s")),
("entropypert", ("", [], "[s - \overline{s}] / \overline{s}")),
- ("enucdot", ("erg/(g*s)", [], "\dot{\epsilon_{nuc}}")),
+ ("enucdot", ("erg/(g*s)", [], "\dot{\epsilon}_{nuc}")),
("Hext", ("erg/(g*s)", [], "H_{ext}")),
# Perturbational pressure grad
("gpi_x", ("dyne/cm**3", [], r"\left(\nabla\pi\right)_x")),
@@ -225,7 +225,7 @@
("h0", ("erg/g", [], "h_0")),
# Momentum cannot be computed because we need to include base and
# full state.
- ("momentum", ("g*cm/s", ["momentum_magnitude"], None)),
+ ("momentum", ("g*cm/s", ["momentum_magnitude"], r"\rho |\mathbf{U}|")),
("p0", ("erg/cm**3", [], "p_0")),
("p0pluspi", ("erg/cm**3", [], "p_0 + \pi")),
("pi", ("erg/cm**3", [], "\pi")),
Repository URL: https://bitbucket.org/yt_analysis/yt/
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