[yt-svn] commit/yt: 5 new changesets
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Thu Jul 24 20:02:44 PDT 2014
5 new commits in yt:
https://bitbucket.org/yt_analysis/yt/commits/d970134ebcdb/
Changeset: d970134ebcdb
Branch: yt-3.0
User: pshriwise
Date: 2014-07-24 18:25:21
Summary: Updates/corrections to Pyne frontend documentation.
Affected #: 1 file
diff -r 5a10dea0299bf9cf1587b4365fd8b73688636a8e -r d970134ebcdb84168fa72b78e33586b3e3dbf8b7 doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -797,21 +797,18 @@
`PyNE <http://pyne.io/>`_ Hex8 meshes are supported by yt and cared for by the PyNE development team
(`pyne-dev at googlegroups.com <pyne-dev%40googlegroups.com>`_).
-PyNE meshes are based on faceted geometries contained in hdf5 files (suffix ".h5m").
+
To load a pyne mesh:
.. code-block:: python
- from pyne.mesh import Mesh
- from pyne.dagmc import load
+ from pyne.mesh import Mesh, IMeshTag
from yt.config import ytcfg; ytcfg["yt","suppressStreamLogging"] = "True"
from yt.frontends.moab.api import PyneMoabHex8StaticOutput
from yt.visualization.plot_window import SlicePlot
- load("faceted_file.h5m")
-
Set up parameters for the mesh:
.. code-block:: python
@@ -821,18 +818,20 @@
coords1 = linspace(0, 7, num_divisions)
coords2 = linspace(-4, 4, num_divisions)
-Generate the Hex8 mesh and convert to a yt dataset using PyneHex8StaticOutput:
+Generate the Hex8 mesh, add data, and convert to a yt dataset using PyneHex8StaticOutput:
.. code-block:: python
m = Mesh(structured=True, structured_coords=[coords0, coords1, coords2], structured_ordering='zyx')
+ m.neutron_flux = IMeshTag() # iMesh tags are equivalent to yt fields
+ m.neutron_flux[:] = neutron_flux_data # list or numpy array of size num_divisions^3
pf = PyneMoabHex8StaticOutput(m)
Any field (tag) data on the mesh can then be viewed just like any other yt dataset!
.. code-block:: python
- s = SlicePlot(pf, 'z', 'density')
+ s = SlicePlot(pf, 'z', 'neutron_flux')
s.display()
https://bitbucket.org/yt_analysis/yt/commits/18ddb673c169/
Changeset: 18ddb673c169
Branch: yt-3.0
User: pshriwise
Date: 2014-07-24 22:08:20
Summary: Combined PyNE and MOAB sections for now.
Affected #: 1 file
diff -r d970134ebcdb84168fa72b78e33586b3e3dbf8b7 -r 18ddb673c169525fb9c2246e85f6c4d6e9802e40 doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -785,14 +785,9 @@
* :ref:`radio_cubes`
* :ref:`xray_fits`
-.. _loading-moab-data:
+.. _loading-pyne/moab-data:
-MOAB Data
----------
-
-.. _loading-pyne-data:
-
-PyNE Data
+PyNE/MOAB Data
---------
`PyNE <http://pyne.io/>`_ Hex8 meshes are supported by yt and cared for by the PyNE development team
https://bitbucket.org/yt_analysis/yt/commits/08dd7b49a47c/
Changeset: 08dd7b49a47c
Branch: yt-3.0
User: pshriwise
Date: 2014-07-24 22:23:40
Summary: Correction to pyne/moab rest label.
Affected #: 1 file
diff -r 18ddb673c169525fb9c2246e85f6c4d6e9802e40 -r 08dd7b49a47cb7cdf01b08d59ec21db0fae11598 doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -785,7 +785,7 @@
* :ref:`radio_cubes`
* :ref:`xray_fits`
-.. _loading-pyne/moab-data:
+.. _loading-pyne-moab-data:
PyNE/MOAB Data
---------
https://bitbucket.org/yt_analysis/yt/commits/032a832bd464/
Changeset: 032a832bd464
Branch: yt-3.0
User: pshriwise
Date: 2014-07-24 22:29:32
Summary: Another small fix so section header matches the label
Affected #: 1 file
diff -r 08dd7b49a47cb7cdf01b08d59ec21db0fae11598 -r 032a832bd4642164fc02bb175aa2b93780d846af doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -787,7 +787,7 @@
.. _loading-pyne-moab-data:
-PyNE/MOAB Data
+PyNE-MOAB Data
---------
`PyNE <http://pyne.io/>`_ Hex8 meshes are supported by yt and cared for by the PyNE development team
https://bitbucket.org/yt_analysis/yt/commits/d4c7a0290fdf/
Changeset: d4c7a0290fdf
Branch: yt-3.0
User: ngoldbaum
Date: 2014-07-25 05:02:36
Summary: Merged in pshriwise/yt_main/yt-3.0 (pull request #1070)
Updates/corrections to Pyne & MOAB frontend documentation.
Affected #: 1 file
diff -r 6dfe7fd6f90947fe787e2fbfa572d75639370e45 -r d4c7a0290fdfdbe26de1ddf2d1d6e6b877dc4d7c doc/source/examining/loading_data.rst
--- a/doc/source/examining/loading_data.rst
+++ b/doc/source/examining/loading_data.rst
@@ -782,33 +782,25 @@
* :ref:`radio_cubes`
* :ref:`xray_fits`
-.. _loading-moab-data:
+.. _loading-pyne-moab-data:
-MOAB Data
----------
-
-.. _loading-pyne-data:
-
-PyNE Data
+PyNE-MOAB Data
---------
`PyNE <http://pyne.io/>`_ Hex8 meshes are supported by yt and cared for by the PyNE development team
(`pyne-dev at googlegroups.com <pyne-dev%40googlegroups.com>`_).
-PyNE meshes are based on faceted geometries contained in hdf5 files (suffix ".h5m").
+
To load a pyne mesh:
.. code-block:: python
- from pyne.mesh import Mesh
- from pyne.dagmc import load
+ from pyne.mesh import Mesh, IMeshTag
from yt.config import ytcfg; ytcfg["yt","suppressStreamLogging"] = "True"
from yt.frontends.moab.api import PyneMoabHex8StaticOutput
from yt.visualization.plot_window import SlicePlot
- load("faceted_file.h5m")
-
Set up parameters for the mesh:
.. code-block:: python
@@ -818,18 +810,20 @@
coords1 = linspace(0, 7, num_divisions)
coords2 = linspace(-4, 4, num_divisions)
-Generate the Hex8 mesh and convert to a yt dataset using PyneHex8StaticOutput:
+Generate the Hex8 mesh, add data, and convert to a yt dataset using PyneHex8StaticOutput:
.. code-block:: python
m = Mesh(structured=True, structured_coords=[coords0, coords1, coords2], structured_ordering='zyx')
+ m.neutron_flux = IMeshTag() # iMesh tags are equivalent to yt fields
+ m.neutron_flux[:] = neutron_flux_data # list or numpy array of size num_divisions^3
pf = PyneMoabHex8StaticOutput(m)
Any field (tag) data on the mesh can then be viewed just like any other yt dataset!
.. code-block:: python
- s = SlicePlot(pf, 'z', 'density')
+ s = SlicePlot(pf, 'z', 'neutron_flux')
s.display()
Repository URL: https://bitbucket.org/yt_analysis/yt/
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