[yt-svn] commit/yt-doc: 2 new changesets

commits-noreply at bitbucket.org commits-noreply at bitbucket.org
Wed Nov 6 07:18:10 PST 2013


2 new commits in yt-doc:

https://bitbucket.org/yt_analysis/yt-doc/commits/38ea947ebf91/
Changeset:   38ea947ebf91
User:        brittonsmith
Date:        2013-11-05 16:54:25
Summary:     Reorganizing the analysis modules docs.
Affected #:  5 files

diff -r aa482e4881748677e642ab64369bc601b2ad442e -r 38ea947ebf915c9e23040f138de5baa9e7bba989 source/analyzing/analysis_modules/exporting.rst
--- /dev/null
+++ b/source/analyzing/analysis_modules/exporting.rst
@@ -0,0 +1,8 @@
+Exporting to External Radiation Transport Codes
+===============================================
+
+.. toctree::
+   :maxdepth: 2
+
+   sunrise_export
+   radmc3d_export
\ No newline at end of file

diff -r aa482e4881748677e642ab64369bc601b2ad442e -r 38ea947ebf915c9e23040f138de5baa9e7bba989 source/analyzing/analysis_modules/halo_analysis.rst
--- /dev/null
+++ b/source/analyzing/analysis_modules/halo_analysis.rst
@@ -0,0 +1,14 @@
+Halo Analysis
+=============
+
+Halo finding, mass functions, merger trees, and profiling.
+
+.. toctree::
+   :maxdepth: 1
+
+   running_halofinder
+   halo_mass_function
+   hmf_howto
+   merger_tree
+   halo_profiling
+   ellipsoid_analysis

diff -r aa482e4881748677e642ab64369bc601b2ad442e -r 38ea947ebf915c9e23040f138de5baa9e7bba989 source/analyzing/analysis_modules/index.rst
--- a/source/analyzing/analysis_modules/index.rst
+++ b/source/analyzing/analysis_modules/index.rst
@@ -8,27 +8,11 @@
 -----------------------------
 
 .. toctree::
-   :maxdepth: 1
+   :maxdepth: 2
 
-   running_halofinder
-   hmf_howto
-   halo_profiling
-   light_cone_generator
-   light_ray_generator
-   planning_cosmology_simulations
-   absorption_spectrum
-   quick_start_fitting
-   fitting_procedure
-   star_analysis
-   simulated_observations
-   halo_mass_function
-   merger_tree
-   radial_column_density
-   sunrise_export
-   ellipsoid_analysis
-   xray_emission_fields
-   radmc3d_export
-   sunyaev_zeldovich
+   halo_analysis
+   synthetic_observation
+   exporting
 
 General Analysis Modules
 ------------------------

diff -r aa482e4881748677e642ab64369bc601b2ad442e -r 38ea947ebf915c9e23040f138de5baa9e7bba989 source/analyzing/analysis_modules/simulated_observations.rst
--- a/source/analyzing/analysis_modules/simulated_observations.rst
+++ /dev/null
@@ -1,66 +0,0 @@
-.. _simulated_observations:
-
-Generating Simulated Observations
-=================================
-
-yt has several facilities for generating simulated observations.  Each of these
-comes with several caveats, and none should be expected to produce a completely
-finished product.  You should investigate each option carefully and determine
-which, if any, will deliver the type of observation you are interested in.
-
-
-
-X-ray Observations
-++++++++++++++++++
-
-Under the assumption of optically thin gas, projections can be made
-using emissivity to generated simulated observations.  yt includes a
-method for handling output from CLOUDY in the ROCO (Smith et al 2008)
-format, and generating integrated emissivity over given energy ranges.
-
-Caveats: The ROCO format for input requires some non-trivial handling
-of CLOUDY output.
-
-= SED Generation and Deposition =
-
-Using BC03 models for stellar population synthesis, star particles in
-a given calculation can be assigned an integrated flux for a specific
-bandpass.  These fluxes can then be combined using either projections
-or volume rendering.  This can use CIC interpolation to deposit a
-total flux into each cell (which should be flux-conserving, modulo a
-multiplicative factor not currently included) which is then either
-projected or volume rendered.
-
-Caveats: The deposition method produces far too washed out and murky
-results.  The multiplicative factor is not currently set correctly
-universally.
-
-= Thermal Gas Emission =
-
-Applying a black body spectrum to the thermal content of the gas, we
-can volume render the domain and apply absorption based on broad
-arguments of scattering.  One could theoretically include star
-particles as point sources in this, using recent changes to the volume
-renderer.
-
-Caveats: Scattering that results in re-emission is completely
-neglected, such as Halpha emission.  Scattering that results in just
-attenuating the emission is set in an ad hoc fashion.  Emission from
-point sources, if included at all, is included in a non-conservative
-fashion.
-
-= Export to Sunrise =
-
-Data can be exported to Sunrise for simulated observation generation.
-
-Caveats: This process is poorly documented.
-
-= SZ Compton y and SZ Kinetic Maps =
-
-Future Directions
------------------
-
-* ALMA maps
-* 21cm observations
-* Applying PSFs
-* 

diff -r aa482e4881748677e642ab64369bc601b2ad442e -r 38ea947ebf915c9e23040f138de5baa9e7bba989 source/analyzing/analysis_modules/synthetic_observation.rst
--- /dev/null
+++ b/source/analyzing/analysis_modules/synthetic_observation.rst
@@ -0,0 +1,19 @@
+Synthetic Observation
+=====================
+
+Methods for generating various types of synthetic observations 
+from simulation data.
+
+.. toctree::
+   :maxdepth: 1
+
+   light_cone_generator
+   light_ray_generator
+   planning_cosmology_simulations
+   absorption_spectrum
+   quick_start_fitting
+   fitting_procedure
+   star_analysis
+   xray_emission_fields
+   sunyaev_zeldovich
+   radial_column_density


https://bitbucket.org/yt_analysis/yt-doc/commits/508ac90e6f95/
Changeset:   508ac90e6f95
User:        MatthewTurk
Date:        2013-11-06 16:18:05
Summary:     Merged in brittonsmith/yt-doc (pull request #114)

Reorganizing the analysis modules docs.
Affected #:  5 files

diff -r d0bdc67d7bb611d5ca1b613df642a6b6b85c41cb -r 508ac90e6f959b4ab67051fafac64265c9ccf231 source/analyzing/analysis_modules/exporting.rst
--- /dev/null
+++ b/source/analyzing/analysis_modules/exporting.rst
@@ -0,0 +1,8 @@
+Exporting to External Radiation Transport Codes
+===============================================
+
+.. toctree::
+   :maxdepth: 2
+
+   sunrise_export
+   radmc3d_export
\ No newline at end of file

diff -r d0bdc67d7bb611d5ca1b613df642a6b6b85c41cb -r 508ac90e6f959b4ab67051fafac64265c9ccf231 source/analyzing/analysis_modules/halo_analysis.rst
--- /dev/null
+++ b/source/analyzing/analysis_modules/halo_analysis.rst
@@ -0,0 +1,14 @@
+Halo Analysis
+=============
+
+Halo finding, mass functions, merger trees, and profiling.
+
+.. toctree::
+   :maxdepth: 1
+
+   running_halofinder
+   halo_mass_function
+   hmf_howto
+   merger_tree
+   halo_profiling
+   ellipsoid_analysis

diff -r d0bdc67d7bb611d5ca1b613df642a6b6b85c41cb -r 508ac90e6f959b4ab67051fafac64265c9ccf231 source/analyzing/analysis_modules/index.rst
--- a/source/analyzing/analysis_modules/index.rst
+++ b/source/analyzing/analysis_modules/index.rst
@@ -8,27 +8,11 @@
 -----------------------------
 
 .. toctree::
-   :maxdepth: 1
+   :maxdepth: 2
 
-   running_halofinder
-   hmf_howto
-   halo_profiling
-   light_cone_generator
-   light_ray_generator
-   planning_cosmology_simulations
-   absorption_spectrum
-   quick_start_fitting
-   fitting_procedure
-   star_analysis
-   simulated_observations
-   halo_mass_function
-   merger_tree
-   radial_column_density
-   sunrise_export
-   ellipsoid_analysis
-   xray_emission_fields
-   radmc3d_export
-   sunyaev_zeldovich
+   halo_analysis
+   synthetic_observation
+   exporting
 
 General Analysis Modules
 ------------------------

diff -r d0bdc67d7bb611d5ca1b613df642a6b6b85c41cb -r 508ac90e6f959b4ab67051fafac64265c9ccf231 source/analyzing/analysis_modules/simulated_observations.rst
--- a/source/analyzing/analysis_modules/simulated_observations.rst
+++ /dev/null
@@ -1,66 +0,0 @@
-.. _simulated_observations:
-
-Generating Simulated Observations
-=================================
-
-yt has several facilities for generating simulated observations.  Each of these
-comes with several caveats, and none should be expected to produce a completely
-finished product.  You should investigate each option carefully and determine
-which, if any, will deliver the type of observation you are interested in.
-
-
-
-X-ray Observations
-++++++++++++++++++
-
-Under the assumption of optically thin gas, projections can be made
-using emissivity to generated simulated observations.  yt includes a
-method for handling output from CLOUDY in the ROCO (Smith et al 2008)
-format, and generating integrated emissivity over given energy ranges.
-
-Caveats: The ROCO format for input requires some non-trivial handling
-of CLOUDY output.
-
-= SED Generation and Deposition =
-
-Using BC03 models for stellar population synthesis, star particles in
-a given calculation can be assigned an integrated flux for a specific
-bandpass.  These fluxes can then be combined using either projections
-or volume rendering.  This can use CIC interpolation to deposit a
-total flux into each cell (which should be flux-conserving, modulo a
-multiplicative factor not currently included) which is then either
-projected or volume rendered.
-
-Caveats: The deposition method produces far too washed out and murky
-results.  The multiplicative factor is not currently set correctly
-universally.
-
-= Thermal Gas Emission =
-
-Applying a black body spectrum to the thermal content of the gas, we
-can volume render the domain and apply absorption based on broad
-arguments of scattering.  One could theoretically include star
-particles as point sources in this, using recent changes to the volume
-renderer.
-
-Caveats: Scattering that results in re-emission is completely
-neglected, such as Halpha emission.  Scattering that results in just
-attenuating the emission is set in an ad hoc fashion.  Emission from
-point sources, if included at all, is included in a non-conservative
-fashion.
-
-= Export to Sunrise =
-
-Data can be exported to Sunrise for simulated observation generation.
-
-Caveats: This process is poorly documented.
-
-= SZ Compton y and SZ Kinetic Maps =
-
-Future Directions
------------------
-
-* ALMA maps
-* 21cm observations
-* Applying PSFs
-* 

diff -r d0bdc67d7bb611d5ca1b613df642a6b6b85c41cb -r 508ac90e6f959b4ab67051fafac64265c9ccf231 source/analyzing/analysis_modules/synthetic_observation.rst
--- /dev/null
+++ b/source/analyzing/analysis_modules/synthetic_observation.rst
@@ -0,0 +1,19 @@
+Synthetic Observation
+=====================
+
+Methods for generating various types of synthetic observations 
+from simulation data.
+
+.. toctree::
+   :maxdepth: 1
+
+   light_cone_generator
+   light_ray_generator
+   planning_cosmology_simulations
+   absorption_spectrum
+   quick_start_fitting
+   fitting_procedure
+   star_analysis
+   xray_emission_fields
+   sunyaev_zeldovich
+   radial_column_density

Repository URL: https://bitbucket.org/yt_analysis/yt-doc/

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