[yt-svn] Build failed in Jenkins: py2.7-yt_analysis-dev #144

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[...truncated 204 lines...]
/usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
In file included from /usr/include/math.h:28:0,
                 from yt/utilities/spatial/src/distance_wrap.c:37:
/usr/include/features.h:215:0: note: this is the location of the previous definition
yt/utilities/spatial/src/distance_wrap.c: In function 'pdist_weighted_minkowski_wrap':
yt/utilities/spatial/src/distance_wrap.c:866:7: warning: assignment discards 'const' qualifier from pointer target type [enabled by default]
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/spatial/src/distance_wrap.o build/temp.linux-x86_64-2.7/yt/utilities/spatial/src/distance.o -L/usr/lib64 -lpython2.7 -o yt/utilities/spatial/_distance_wrap.so
building 'yt.utilities.lib.CICDeposit' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

creating build/temp.linux-x86_64-2.7/yt/utilities/lib
compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/CICDeposit.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/CICDeposit.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/CICDeposit.so
building 'yt.utilities.lib.ContourFinding' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-Iyt/utilities/lib/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/union_find.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/ContourFinding.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/ContourFinding.o build/temp.linux-x86_64-2.7/yt/utilities/lib/union_find.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/ContourFinding.so
building 'yt.utilities.lib.DepthFirstOctree' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/DepthFirstOctree.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/DepthFirstOctree.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/DepthFirstOctree.so
building 'yt.utilities.lib.fortran_reader' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-Iyt/utilities/lib/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/fortran_reader.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/fortran_reader.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/fortran_reader.so
building 'yt.utilities.lib.freetype_writer' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/include -I/usr/include/freetype2 -Iyt/utilities/lib -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/freetype_writer.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/freetype_writer.o -L/usr/lib -L/usr/lib64 -lfreetype -lpython2.7 -o yt/utilities/lib/freetype_writer.so
building 'yt.utilities.lib.geometry_utils' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-fopenmp'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/geometry_utils.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/geometry_utils.so -fopenmp
building 'yt.utilities.lib.Interpolators' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/Interpolators.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/Interpolators.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/Interpolators.so
building 'yt.utilities.lib.marching_cubes' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-Iyt/utilities/lib/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/marching_cubes.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/FixedInterpolator.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/marching_cubes.so
building 'yt.utilities.lib.misc_utilities' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/misc_utilities.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/misc_utilities.so
building 'yt.utilities.lib.Octree' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/Octree.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/Octree.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/Octree.so
building 'yt.utilities.lib.png_writer' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/png_writer.c
yt/utilities/lib/png_writer.c: In function '__pyx_pf_2yt_9utilities_3lib_10png_writer_write_png_to_file':
yt/utilities/lib/png_writer.c:1321:19: warning: assignment makes pointer from integer without a cast [enabled by default]
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/png_writer.o -L/usr/lib -L/usr/lib64 -lm -lpng -lpython2.7 -o yt/utilities/lib/png_writer.so
building 'yt.utilities.lib.PointsInVolume' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/PointsInVolume.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/PointsInVolume.so
building 'yt.utilities.lib.QuadTree' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/QuadTree.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/QuadTree.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/QuadTree.so
building 'yt.utilities.lib.RayIntegrators' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/RayIntegrators.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/RayIntegrators.so
building 'yt.utilities.lib.VolumeIntegrator' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-Iyt/utilities/lib/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/kdtree.c
In file included from /usr/include/python2.7/Python.h:8:0,
                 from yt/utilities/lib/kdtree.h:29,
                 from yt/utilities/lib/kdtree.c:32:
/usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
In file included from /usr/include/stdio.h:28:0,
                 from yt/utilities/lib/kdtree.c:28:
/usr/include/features.h:215:0: note: this is the location of the previous definition
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/VolumeIntegrator.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_mk_pix2xy.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_pix2ang_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/FixedInterpolator.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_pix2vec_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_mk_xy2pix.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_vec2pix_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_ang2pix_nest.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/VolumeIntegrator.so
building 'yt.utilities.lib.grid_traversal' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-Iyt/utilities/lib/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-fopenmp'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/kdtree.c
In file included from /usr/include/python2.7/Python.h:8:0,
                 from yt/utilities/lib/kdtree.h:29,
                 from yt/utilities/lib/kdtree.c:32:
/usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
In file included from /usr/include/stdio.h:28:0,
                 from yt/utilities/lib/kdtree.c:28:
/usr/include/features.h:215:0: note: this is the location of the previous definition
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_mk_pix2xy.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_pix2ang_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/FixedInterpolator.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_pix2vec_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/grid_traversal.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_mk_xy2pix.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_vec2pix_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_ang2pix_nest.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/grid_traversal.so -fopenmp
building 'yt.utilities.lib.GridTree' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/GridTree.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/lib/GridTree.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/GridTree.so
building 'yt.utilities.data_point_utilities' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/data_point_utilities.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/data_point_utilities.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/data_point_utilities.so
building 'yt.utilities.hdf5_light_reader' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

compile options: '-DH5_USE_16_API=True -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/hdf5_light_reader.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.o -L/usr/lib -L/usr/lib64 -lm -lhdf5 -lpython2.7 -o yt/utilities/hdf5_light_reader.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/grammar.c
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function '__config_locale_override':
yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
yt/utilities/_libconfig/libconfig.c: In function '__config_locale_restore':
yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/strbuf.c
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/scanner.c
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/scanctx.c
x86_64-pc-linux-gnu-gcc: yt/utilities/libconfig_wrapper.c
yt/utilities/libconfig_wrapper.c: In function '__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_4read_file':
yt/utilities/libconfig_wrapper.c:853:24: warning: assignment discards 'const' qualifier from pointer target type [enabled by default]
yt/utilities/libconfig_wrapper.c:862:24: warning: assignment discards 'const' qualifier from pointer target type [enabled by default]
yt/utilities/libconfig_wrapper.c: In function '__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_10get_setting':
yt/utilities/libconfig_wrapper.c:1383:23: warning: assignment discards 'const' qualifier from pointer target type [enabled by default]
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o -L/usr/lib64 -lpython2.7 -o yt/utilities/libconfig_wrapper.so
building 'yt.visualization._MPL' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC

creating build/temp.linux-x86_64-2.7/yt/visualization
compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/visualization/_MPL.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -L/usr/lib64 -lm -lpython2.7 -o yt/visualization/_MPL.so
running scons
+ /usr/bin/python2.7 setup.py nosetests --with-answer-testing
non-existing path in 'yt/utilities/spatial': 'yt/utilities/spatial/tests'
PNG_LOCATION: png found in: /usr/include, /usr/lib
FTYPE_LOCATION: freetype found in: /usr/include, /usr/lib
HDF5_LOCATION: HDF5_DIR: /usr/include, /usr/lib
running nosetests
running build_py
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/yt
Traceback (most recent call last):
  File "setup.py", line 286, in <module>
    setup_package()
  File "setup.py", line 281, in setup_package
    'build_src': my_build_src, 'install_data': my_install_data},
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/core.py", line 186, in setup
    return old_setup(**new_attr)
  File "/usr/lib64/python2.7/distutils/core.py", line 152, in setup
    dist.run_commands()
  File "/usr/lib64/python2.7/distutils/dist.py", line 953, in run_commands
    self.run_command(cmd)
  File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command
    cmd_obj.run()
  File "/usr/lib64/python2.7/site-packages/nose/commands.py", line 121, in run
    self.run_command('build_py')
  File "/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command
    self.distribution.run_command(command)
  File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command
    cmd_obj.run()
  File "setup.py", line 221, in run
    build_py.run(self)
  File "/usr/lib64/python2.7/distutils/command/build_py.py", line 91, in run
    self.build_modules()
  File "/usr/lib64/python2.7/distutils/command/build_py.py", line 344, in build_modules
    modules = self.find_modules()
  File "/usr/lib64/python2.7/distutils/command/build_py.py", line 257, in find_modules
    path = module.split('.')
AttributeError: 'tuple' object has no attribute 'split'
Build step 'Custom Python Builder' marked build as failure
Recording test results
Unable to auto-install JDK until the license is accepted.
Unable to auto-install JDK until the license is accepted.