[yt-svn] commit/yt-3.0: 204 new changesets
commits-noreply at bitbucket.org
commits-noreply at bitbucket.org
Thu Mar 7 22:30:34 PST 2013
204 new commits in yt-3.0:
https://bitbucket.org/yt_analysis/yt-3.0/commits/f39201e9e4c0/
changeset: f39201e9e4c0
branch: stable
user: jzuhone
date: 2012-08-07 23:32:33
summary: Fix for FLASH 1-2D datasets. The shape of the bounding box is the same regardless of the code version, at least from 2.x to 4.x. This ensures that the grid bondaries for the non-represented dimensions will be set to the domain boundaries.
affected #: 1 file
diff -r 2160220a810d53ef32dcbd2b695fdbe626db9e98 -r f39201e9e4c0f668e9afa82e8e9e86c1ab22edfd yt/frontends/flash/data_structures.py
--- a/yt/frontends/flash/data_structures.py
+++ b/yt/frontends/flash/data_structures.py
@@ -107,15 +107,9 @@
self.grid_left_edge[:,i] = DLE[i]
self.grid_right_edge[:,i] = DRE[i]
# We only go up to ND for 2D datasets
- if (f["/bounding box"][:,:,0].shape[1] == ND) :
- #FLASH 2/3 2D data
- self.grid_left_edge[:,:ND] = f["/bounding box"][:,:,0]
- self.grid_right_edge[:,:ND] = f["/bounding box"][:,:,1]
- else:
- self.grid_left_edge[:,:] = f["/bounding box"][:,:,0]
- self.grid_right_edge[:,:] = f["/bounding box"][:,:,1]
-
-
+ self.grid_left_edge[:,:ND] = f["/bounding box"][:,:ND,0]
+ self.grid_right_edge[:,:ND] = f["/bounding box"][:,:ND,1]
+
# Move this to the parameter file
try:
nxb = pf.parameters['nxb']
https://bitbucket.org/yt_analysis/yt-3.0/commits/8540f3bba288/
changeset: 8540f3bba288
branch: stable
user: MatthewTurk
date: 2012-09-13 14:30:49
summary: Fixing YT_DEST in activate.csh.
affected #: 1 file
diff -r f39201e9e4c0f668e9afa82e8e9e86c1ab22edfd -r 8540f3bba28812370fef5cd683d4d6e8a4645815 doc/activate.csh
--- a/doc/activate.csh
+++ b/doc/activate.csh
@@ -20,7 +20,7 @@
setenv YT_DEST
endif
set _OLD_VIRTUAL_YT_DEST="$YT_DEST"
-setenv YT_DEST "${VIRTUAL_ENV}:${YT_DEST}"
+setenv YT_DEST "${VIRTUAL_ENV}"
if ($?PYTHONPATH == 0) then
setenv PYTHONPATH
https://bitbucket.org/yt_analysis/yt-3.0/commits/b076773c7f26/
changeset: b076773c7f26
branch: stable
user: samskillman
date: 2012-09-14 00:28:47
summary: Fixing a bug when this was moved out of camera.py and into orientation.py. The original north vector fed to the orienter should not be modified, even if steady_north is used.
affected #: 1 file
diff -r 8540f3bba28812370fef5cd683d4d6e8a4645815 -r b076773c7f269f5044e1ff98a02f9e82709ef674 yt/utilities/orientation.py
--- a/yt/utilities/orientation.py
+++ b/yt/utilities/orientation.py
@@ -56,6 +56,7 @@
mylog.error("North vector and normal vector are the same. Disregarding north vector.")
north_vector = None
if north_vector is not None: self.steady_north = True
+ self.north_vector = north_vector
self._setup_normalized_vectors(normal_vector, north_vector)
def _setup_normalized_vectors(self, normal_vector, north_vector):
@@ -74,7 +75,6 @@
north_vector /= na.sqrt(na.dot(north_vector, north_vector))
east_vector /= na.sqrt(na.dot(east_vector, east_vector))
self.normal_vector = normal_vector
- self.north_vector = north_vector
self.unit_vectors = [east_vector, north_vector, normal_vector]
self.inv_mat = na.linalg.pinv(self.unit_vectors)
https://bitbucket.org/yt_analysis/yt-3.0/commits/f22174bd62d5/
changeset: f22174bd62d5
branch: stable
user: MatthewTurk
date: 2012-09-19 15:08:03
summary: Backporting volume / progressbar fix to stable.
affected #: 1 file
diff -r b076773c7f269f5044e1ff98a02f9e82709ef674 -r f22174bd62d5b5c140b19bb38c99d20f34b037ee yt/utilities/amr_kdtree/amr_kdtree.py
--- a/yt/utilities/amr_kdtree/amr_kdtree.py
+++ b/yt/utilities/amr_kdtree/amr_kdtree.py
@@ -998,11 +998,11 @@
anprocs = 2**par_tree_depth
volume_partitioned = 0.0
- pbar = get_pbar("Building kd-Tree",
- na.prod(self.domain_right_edge-self.domain_left_edge))
+ total_vol = na.prod(self.domain_right_edge-self.domain_left_edge)
+ pbar = get_pbar("Building kd-Tree", total_vol)
while current_node is not None:
- pbar.update(volume_partitioned)
+ pbar.update(min(volume_partitioned, total_vol))
# If we don't have any grids, that means we are revisiting
# a dividing node, and there is nothing to be done.
https://bitbucket.org/yt_analysis/yt-3.0/commits/fd840d83bd32/
changeset: fd840d83bd32
branch: stable
user: MatthewTurk
date: 2012-10-09 23:10:24
summary: Back-porting notebook upload to stable
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/d01a0684bdba/
changeset: d01a0684bdba
branch: yt-3.0
user: sleitner
date: 2012-11-06 04:47:31
summary: moved ramses files over to use as template for artio; commited artio from src/tools/ with additional cpdef-able header reader; added wrapper file "artio_caller.pyx", along with compile ("make"), and execution example (call.py).
affected #: 25 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/abb6c00d7ed7/
changeset: abb6c00d7ed7
branch: yt-3.0
user: sleitner
date: 2012-11-13 19:50:38
summary: new artio frontend compiles with the rest of yt.... it is just a copy of ramses routines with some wrappers mixed in to _artio_reader.pyx for the artio libraries in artio_headers. A chunk of the oct routines were copied from yt/geometry as well.
affected #: 25 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/847938d462ca/
changeset: 847938d462ca
branch: yt-3.0
user: sleitner
date: 2012-11-14 17:27:32
summary: is_valid successfully calls read_header from artio library filename is hardcoded for the moment
affected #: 5 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7857d97a41fc/
changeset: 7857d97a41fc
branch: yt-3.0
user: drudd
date: 2012-11-14 21:52:06
summary: Added artio2. Need to link cart:/src/tools/artio directory to
yt/frontends/artio2/artio (useful since artio is under development).
affected #: 8 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/bfee9fc2e1f2/
changeset: bfee9fc2e1f2
branch: yt-3.0
user: drudd
date: 2012-11-14 23:17:32
summary: Changed to class based wrapper.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6b59f76c97e6/
changeset: 6b59f76c97e6
branch: yt-3.0
user: drudd
date: 2012-11-15 21:26:19
summary: Version which will successfully pass load()
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/588a391e629d/
changeset: 588a391e629d
branch: yt-3.0
user: sleitner
date: 2012-11-18 05:10:48
summary: integrated artio2 read header into ramses template in artio. waiting for instruction on how to handle grid io.
affected #: 17 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/58b419562813/
changeset: 58b419562813
branch: yt-3.0
user: sleitner
date: 2012-11-19 16:03:57
summary: updating with changes to main branch so that tests will function
affected #: 72 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e7086b9fcf2e/
changeset: e7086b9fcf2e
branch: yt-3.0
user: sleitner
date: 2012-12-04 17:44:03
summary: really messy commit, but uses callback from artio to pull positions into the oct_handler; a lot to resolve and clean up here...
affected #: 17 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6acd61581813/
changeset: 6acd61581813
branch: yt-3.0
user: sleitner
date: 2012-12-04 22:59:40
summary: fixed bug and cleaned up error handling in count_octs
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/649fe8244ebe/
changeset: 649fe8244ebe
branch: yt-3.0
user: sleitner
date: 2012-12-18 06:13:40
summary: fix to iterating pos if dimensions are not all the same.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ff52d819afc8/
changeset: ff52d819afc8
branch: yt-3.0
user: sleitner
date: 2012-12-18 06:24:53
summary: artio oct ordering is different from ramses (same as mask). fill_level was replaced with fill_mask for artio and source array is 1D
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/27be21a42305/
changeset: 27be21a42305
branch: yt-3.0
user: sleitner
date: 2012-12-18 06:41:44
summary: rewrite and clean up of grid_pos. first crack at working fill.
affected #: 6 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5d094d6f335c/
changeset: 5d094d6f335c
branch: yt-3.0
user: sleitner
date: 2012-12-18 19:42:12
summary: excising unnecessary RAMSES libraries that were floating around artio
affected #: 11 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/def08f52f41e/
changeset: def08f52f41e
branch: yt-3.0
user: sleitner
date: 2012-12-27 17:41:31
summary: fixed issue with indices going negative (seen in RAMSES) ... Matt is also making this fix in the main repo
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/37f1c7c391b6/
changeset: 37f1c7c391b6
branch: yt-3.0
user: sleitner
date: 2013-01-21 21:13:20
summary: Masking in oct_container is still broken, but at least values are being read and plots can be created. The root level is dealt with by creating 0-level yt octs that get filled in position-order by their children (also on level=0 -- yt octs live on the same level as their children).
affected #: 12 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1f6f29e83b16/
changeset: 1f6f29e83b16
branch: yt-3.0
user: sleitner
date: 2013-01-22 18:04:38
summary: fixed a bug that left some oct children empty (ARTIO_READ_REFINED_NOT_ROOT): fill now reads all cells.
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b02cf1afc11d/
changeset: b02cf1afc11d
branch: yt-3.0
user: sleitner
date: 2013-01-23 01:23:05
summary: fields.py copied from art and fwidth corrected so that cell size is correct. slice now returns filled in image, but still garbled.
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/12993fc3a9e6/
changeset: 12993fc3a9e6
branch: yt-3.0
user: sleitner
date: 2013-01-23 01:51:53
summary: pulling from tip
affected #: 126 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1b2eb4287f7d/
changeset: 1b2eb4287f7d
branch: yt-3.0
user: sleitner
date: 2013-01-23 05:14:30
summary: small fixes to last commit
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0fa5ed2aa35e/
changeset: 0fa5ed2aa35e
branch: yt-3.0
user: sleitner
date: 2013-01-23 18:13:15
summary: +Matt's fix to make dx plottable.
+only open/close around (root) sfc searches once
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9c9291aeb927/
changeset: 9c9291aeb927
branch: yt-3.0
user: sleitner
date: 2013-01-23 22:53:55
summary: renamed cell_pos_ to oct_pos_ because adding octs not cells
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9db5455b3018/
changeset: 9db5455b3018
branch: yt-3.0
user: sleitner
date: 2013-01-24 22:58:57
summary: added more units and fields. temperature now seems to work modulo mangled read order.
affected #: 6 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1eedaead86b9/
changeset: 1eedaead86b9
branch: yt-3.0
user: sleitner
date: 2013-01-26 20:42:43
summary: fixed the "mangling" issue -- coords functions are no longer tied to levels
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f5c46f2bda9d/
changeset: f5c46f2bda9d
branch: yt-3.0
user: drudd
date: 2013-01-28 02:13:42
summary: Updated to support non-cosmological sims without particles
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4b6c73aaad75/
changeset: 4b6c73aaad75
branch: yt-3.0
user: drudd
date: 2013-01-28 19:35:05
summary: Updated version of artio, replaced _artio_reader, other modifications to artio frontend
affected #: 23 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/191298d0d5ae/
changeset: 191298d0d5ae
branch: yt-3.0
user: sleitner
date: 2013-01-28 20:44:47
summary: some particle arrays need to be initialized as empty even if they are not used/supported
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7a327062405f/
changeset: 7a327062405f
branch: yt-3.0
user: drudd
date: 2013-01-28 23:21:21
summary: Updated artio functions to include posix buffering. FIxed bug in root ordering
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/2e88889718d7/
changeset: 2e88889718d7
branch: yt-3.0
user: awetzel
date: 2013-01-30 00:53:05
summary: TotalGasEnergy --> TotalEnergy
added self.parameters['Gamma']
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/67648006a077/
changeset: 67648006a077
branch: yt-3.0
user: MatthewTurk
date: 2013-01-30 14:30:49
summary: Some initial optimization work on artio Cython interface.
This speeds up variable filling considerably for the test dataset I have, and
results are identical. The next phase will be grid positioning.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c32636022f17/
changeset: c32636022f17
branch: yt-3.0
user: MatthewTurk
date: 2013-01-30 16:02:33
summary: Refactored ARTIOOctreeContainer's add function
This changes add(), which was previously designed to be called from Python with
arrays, to add_oct, a cdef'd function that adds individual Octs. Doug has
mentioned he has an idea for refactoring this more extensively.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/591b24e03480/
changeset: 591b24e03480
branch: yt-3.0
user: MatthewTurk
date: 2013-03-07 01:56:30
summary: Fixing the smoothed covering grid tests
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/3ba01837bf24/
changeset: 3ba01837bf24
branch: yt
user: atmyers
date: 2013-02-10 03:25:03
summary: fixing a bug in the gdf writer
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5a8f036ac9a4/
changeset: 5a8f036ac9a4
branch: yt
user: sskory
date: 2012-12-07 22:03:04
summary: Removing time delay from halo mass function.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/2f5b028c4986/
changeset: 2f5b028c4986
branch: yt
user: sskory
date: 2012-12-07 22:03:24
summary: Merge.
affected #: 13 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f0ccebb68031/
changeset: f0ccebb68031
branch: yt
user: sskory
date: 2012-12-13 17:44:23
summary: Merge.
affected #: 9 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e82d96149133/
changeset: e82d96149133
branch: yt
user: sskory
date: 2012-12-15 00:37:04
summary: Merge.
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f3bb618f5a7a/
changeset: f3bb618f5a7a
branch: yt
user: sskory
date: 2012-12-18 17:01:26
summary: Merge.
affected #: 13 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f2a4af62d852/
changeset: f2a4af62d852
branch: yt
user: sskory
date: 2012-12-21 17:03:29
summary: Merge.
affected #: 8 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e239cc876094/
changeset: e239cc876094
branch: yt
user: sskory
date: 2012-12-27 22:58:52
summary: Merge
affected #: 7 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/748a991b04f9/
changeset: 748a991b04f9
branch: yt
user: sskory
date: 2013-01-06 15:38:44
summary: Merge.
affected #: 13 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/dd49fb38eda6/
changeset: dd49fb38eda6
branch: yt
user: sskory
date: 2013-01-11 20:41:46
summary: Merge.
affected #: 6 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0622634b51bc/
changeset: 0622634b51bc
branch: yt
user: sskory
date: 2013-01-11 20:51:05
summary: Some missing attributes for LoadedHalos.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a602faab7738/
changeset: a602faab7738
branch: yt
user: sskory
date: 2013-01-23 21:40:56
summary: Merge.
affected #: 15 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/54243f643880/
changeset: 54243f643880
branch: yt
user: sskory
date: 2013-01-29 22:32:41
summary: Merge.
affected #: 8 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/086a45e3a01a/
changeset: 086a45e3a01a
branch: yt
user: sskory
date: 2013-02-08 21:53:22
summary: Fixing the center of mass calculation for halos.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4b3e48b5d3cf/
changeset: 4b3e48b5d3cf
branch: yt
user: sskory
date: 2013-02-08 21:53:38
summary: Merge.
affected #: 41 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/160e80992381/
changeset: 160e80992381
branch: yt
user: sskory
date: 2013-02-08 22:41:36
summary: Changes suggested by Britton.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6c75bbac3629/
changeset: 6c75bbac3629
branch: yt
user: sskory
date: 2013-02-08 23:38:52
summary: Making the periodicity stuff for center_of_mass clearer.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/bc7f37541e66/
changeset: bc7f37541e66
branch: yt
user: sskory
date: 2013-02-08 23:41:55
summary: Accidentally commited some work in progress stuff. Removing.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/d5e52722bcf5/
changeset: d5e52722bcf5
branch: yt
user: MatthewTurk
date: 2013-02-12 19:15:16
summary: Merged in sskory/yt (pull request #420)
Halo center of mass fix
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5943c2886c73/
changeset: 5943c2886c73
branch: yt
user: samskillman
date: 2013-02-13 17:05:17
summary: Closes issue #497.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f65d7380144e/
changeset: f65d7380144e
branch: yt
user: MatthewTurk
date: 2013-02-13 20:36:21
summary: Applying the two fixes to the install script, which were mistakenly on stable.
This closes #496.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/eafea0fd3d56/
changeset: eafea0fd3d56
branch: yt
user: MatthewTurk
date: 2013-02-13 21:25:49
summary: This restores the old behavior of cam.show() not having an integrated alpha channel.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/740ea6ff9ec4/
changeset: 740ea6ff9ec4
branch: yt
user: ngoldbaum
date: 2013-02-13 21:51:21
summary: Fixing cutting plane to_pw(), adding cutting plane tests.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a9ad0cb73590/
changeset: a9ad0cb73590
branch: yt
user: ngoldbaum
date: 2013-02-13 21:51:46
summary: Merged yt_analysis/yt into yt
affected #: 27 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/19ba4fb63662/
changeset: 19ba4fb63662
branch: yt
user: sskory
date: 2013-02-13 22:22:18
summary: Adding periodicity to EnzoStaticOutputInMemory
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/bd760ea40463/
changeset: bd760ea40463
branch: yt
user: sskory
date: 2013-02-13 22:22:37
summary: Merge.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/857d0f0f1016/
changeset: 857d0f0f1016
branch: yt
user: MatthewTurk
date: 2013-02-14 15:03:02
summary: Adding OpenSUSE to the install script, along with lib/lib64 checks.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f2583db944f0/
changeset: f2583db944f0
branch: yt
user: jzuhone
date: 2013-02-12 18:13:15
summary: Answer testing for FLASH data. This commit just sets up the basic testing framework with very basic tests. More complex tests will follow.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/3e22311df39a/
changeset: 3e22311df39a
branch: yt
user: MatthewTurk
date: 2013-02-14 18:00:48
summary: A few fixes for FLASH answer testing in 2D
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a42fc6396b3b/
changeset: a42fc6396b3b
branch: yt
user: MatthewTurk
date: 2013-02-14 18:01:10
summary: Merge
affected #: 9 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/31361cabdc34/
changeset: 31361cabdc34
branch: yt
user: atmyers
date: 2013-02-06 21:34:24
summary: setting the 'cosmological simulation' parameter in the Chombo frontend to False by default
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/adc5ab9dc397/
changeset: adc5ab9dc397
branch: yt
user: atmyers
date: 2013-02-06 22:44:19
summary: refactoring the gdf writer a bit and adding the option to write to single fields to backup files
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/2124bcf32368/
changeset: 2124bcf32368
branch: yt
user: atmyers
date: 2013-02-06 22:45:08
summary: adding a backup_filename parameter to the chombo frontend
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/2b305e8d52e1/
changeset: 2b305e8d52e1
branch: yt
user: atmyers
date: 2013-02-07 00:57:45
summary: modifying the io routines for the Chombo frontend to check the backup file
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cd792f88aca4/
changeset: cd792f88aca4
branch: yt
user: atmyers
date: 2013-02-07 00:58:50
summary: detecting fields in the backup as well for the Chombo frontend
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ec04e80b9ece/
changeset: ec04e80b9ece
branch: yt
user: atmyers
date: 2013-02-07 02:23:20
summary: adding a docstring to the save_field function
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/84f10af3293d/
changeset: 84f10af3293d
branch: yt
user: atmyers
date: 2013-02-08 02:07:27
summary: some refactoring of the io functions to support saving of derived fields accross all frontends
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/600e45161059/
changeset: 600e45161059
branch: yt
user: atmyers
date: 2013-02-08 02:33:38
summary: catching an exception for when you try to write a field with a name that already exits
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/14efec3bd683/
changeset: 14efec3bd683
branch: yt
user: atmyers
date: 2013-02-08 02:34:50
summary: Merged yt_analysis/yt into yt
affected #: 21 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4b71796d20a0/
changeset: 4b71796d20a0
branch: yt
user: atmyers
date: 2013-02-08 02:41:00
summary: don't need this import anymore
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/50d895cf7cb2/
changeset: 50d895cf7cb2
branch: yt
user: atmyers
date: 2013-02-08 02:45:22
summary: merging
affected #: 21 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/df9196aa7996/
changeset: df9196aa7996
branch: yt
user: atmyers
date: 2013-02-08 07:18:56
summary: further refactoring of the derived field saving mechanism. Supports the Enzo frontend now
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/00407b021b37/
changeset: 00407b021b37
branch: yt
user: atmyers
date: 2013-02-08 08:13:55
summary: adding support for orion data
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4ada4f91eaf5/
changeset: 4ada4f91eaf5
branch: yt
user: atmyers
date: 2013-02-08 09:21:01
summary: flash
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/73eeba46c80b/
changeset: 73eeba46c80b
branch: yt
user: atmyers
date: 2013-02-08 21:12:07
summary: replacing clunky function name '_read_data_set_from_pf' with '_read_data'
affected #: 5 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/43cd92f9d706/
changeset: 43cd92f9d706
branch: yt
user: atmyers
date: 2013-02-08 21:16:00
summary: forgot one place
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c00f33f71331/
changeset: c00f33f71331
branch: yt
user: atmyers
date: 2013-02-08 21:25:13
summary: making _read_data_set --> _read_data change in all of the other frontends
affected #: 11 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ce9625180cfe/
changeset: ce9625180cfe
branch: yt
user: atmyers
date: 2013-02-08 21:41:40
summary: set the backup_filename in the base StaticOutput class rather than in the individual frontends
affected #: 5 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/da27899e8fd7/
changeset: da27899e8fd7
branch: yt
user: atmyers
date: 2013-02-08 21:57:52
summary: catching a couple of exceptions and changing the default backup file location
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5cd51067274f/
changeset: 5cd51067274f
branch: yt
user: atmyers
date: 2013-02-08 23:05:57
summary: fixing some changes I somehow accidently made to the periodicity checking in the flash, orion, and enzo frontents
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/47caf837151a/
changeset: 47caf837151a
branch: yt
user: atmyers
date: 2013-02-08 23:08:28
summary: missed this one
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4dc9fe209517/
changeset: 4dc9fe209517
branch: yt
user: atmyers
date: 2013-02-08 23:09:57
summary: maybe this time
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/84d25f6ceac9/
changeset: 84d25f6ceac9
branch: yt
user: atmyers
date: 2013-02-10 03:45:20
summary: fixing grid offset bug in this version too
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/fa56e6874158/
changeset: fa56e6874158
branch: yt
user: atmyers
date: 2013-02-10 07:34:10
summary: resolving conflict
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/15cc336494aa/
changeset: 15cc336494aa
branch: yt
user: atmyers
date: 2013-02-10 09:14:21
summary: fixing a couple of bugs
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5e7383e0ce54/
changeset: 5e7383e0ce54
branch: yt
user: atmyers
date: 2013-02-14 03:08:41
summary: Merged yt_analysis/yt into yt
affected #: 9 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/043815a1ec25/
changeset: 043815a1ec25
branch: yt
user: atmyers
date: 2013-02-14 06:56:34
summary: only check disk for presence of data file once
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4ff66fe9aa72/
changeset: 4ff66fe9aa72
branch: yt
user: atmyers
date: 2013-02-14 18:28:39
summary: simplfying the detect fields code somewhat
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c237cc8de828/
changeset: c237cc8de828
branch: yt
user: atmyers
date: 2013-02-14 19:03:35
summary: warn people if they try to save particle fields
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e1b7792e6807/
changeset: e1b7792e6807
branch: yt
user: MatthewTurk
date: 2013-02-14 19:25:39
summary: Adjusting IO frontends for the new sidecar file.
affected #: 15 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5027f592349e/
changeset: 5027f592349e
branch: yt
user: MatthewTurk
date: 2013-02-14 19:45:49
summary: Merged in atmyers/yt (pull request #416)
Saving derived fields to disk
affected #: 24 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/079b9451387e/
changeset: 079b9451387e
branch: yt
user: ngoldbaum
date: 2013-02-14 08:35:56
summary: Touching up the callbacks so we only attach working callbacks to PWViewerMPL instances.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/245a4c9161ea/
changeset: 245a4c9161ea
branch: yt
user: ngoldbaum
date: 2013-02-14 08:41:20
summary: No need to modify the streamline callback since it is disable for OAPP.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e2a1aa6a8312/
changeset: e2a1aa6a8312
branch: yt
user: MatthewTurk
date: 2013-02-14 21:12:46
summary: Merged in ngoldbaum/yt (pull request #426)
Only attach working callbacks to PWViewerMPL instances.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a9fd65a915e7/
changeset: a9fd65a915e7
branch: yt
user: MatthewTurk
date: 2013-02-14 23:24:43
summary: Updating to gold006 for gold standard.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/3407bf928aed/
changeset: 3407bf928aed
branch: yt
user: MatthewTurk
date: 2013-02-15 14:17:31
summary: Adding tests for Chombo and Orion
This also manually sets Chombo periodicity to True and uses the full path for
Chombo data files.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6ad7685b3771/
changeset: 6ad7685b3771
branch: yt
user: MatthewTurk
date: 2013-02-15 14:44:00
summary: Retain the file handle inside Chombo datasets, the way we do for FLASH.
This speed up IO for chombo considerably.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/56d08189016f/
changeset: 56d08189016f
branch: yt
user: xarthisius
date: 2013-02-15 20:20:05
summary: [gdf] Use default _read_data_slice. Fixes #502
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5c9be6acb245/
changeset: 5c9be6acb245
branch: yt
user: brittonsmith
date: 2013-02-15 20:29:53
summary: Removing old spectral integrator that worked with the ascii Cloudy tables.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cdd1afefe429/
changeset: cdd1afefe429
branch: yt
user: MatthewTurk
date: 2013-02-15 20:34:55
summary: Merged in brittonsmith/yt (pull request #431)
Removing old spectral integrator that worked with the ascii Cloudy tables.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/949825951849/
changeset: 949825951849
branch: yt
user: MatthewTurk
date: 2013-02-15 18:12:57
summary: Moving docstrings from __init__ to top-level in plot_window.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b694f47a5a6d/
changeset: b694f47a5a6d
branch: yt
user: MatthewTurk
date: 2013-02-15 18:23:50
summary: Moving docstrings from __init__ to top-level in data_containers.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/78b607fff0ec/
changeset: 78b607fff0ec
branch: yt
user: MatthewTurk
date: 2013-02-15 18:24:23
summary: Moving docstrings from __init__ to top-level in plot_collection.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a9dae4f647d9/
changeset: a9dae4f647d9
branch: yt
user: MatthewTurk
date: 2013-02-15 18:26:56
summary: Moving docstrings from __init__ to top-level in profiles.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ed005fd80434/
changeset: ed005fd80434
branch: yt
user: MatthewTurk
date: 2013-02-15 18:32:22
summary: Moving docstrings from __init__ to top-level in plot_modifications.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/d25a4d070c0f/
changeset: d25a4d070c0f
branch: yt
user: MatthewTurk
date: 2013-02-15 18:37:45
summary: Moving docstrings from __init__ to top-level in time_series.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c4232cc67a7e/
changeset: c4232cc67a7e
branch: yt
user: MatthewTurk
date: 2013-02-15 18:37:51
summary: Moving docstrings from __init__ to top-level in camera.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a73c6ee4ad44/
changeset: a73c6ee4ad44
branch: yt
user: MatthewTurk
date: 2013-02-15 18:44:06
summary: Moving docstrings from __init__ to top-level in halo_objects.py.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7c55a92502fc/
changeset: 7c55a92502fc
branch: yt
user: MatthewTurk
date: 2013-02-15 18:45:29
summary: Moving docstrings from __init__ to top-level in transfer_functions.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7cb529a1b0ce/
changeset: 7cb529a1b0ce
branch: yt
user: MatthewTurk
date: 2013-02-15 18:50:32
summary: Moving docstrings from __init__ to top-level in light_cone.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c322b4e07f81/
changeset: c322b4e07f81
branch: yt
user: MatthewTurk
date: 2013-02-15 18:50:46
summary: Moving docstrings from __init__ to top-level in absorption_spectrum.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0b37e17e305f/
changeset: 0b37e17e305f
branch: yt
user: MatthewTurk
date: 2013-02-15 18:52:32
summary: Moving docstrings from __init__ to top-level in halo_mass_function.py.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ce846a515c30/
changeset: ce846a515c30
branch: yt
user: MatthewTurk
date: 2013-02-15 18:52:48
summary: Moving docstrings from __init__ to top-level in light_ray.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/78be8e6309d6/
changeset: 78be8e6309d6
branch: yt
user: MatthewTurk
date: 2013-02-15 18:52:56
summary: Moving docstrings from __init__ to top-level in rockstar.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/389b05d1af10/
changeset: 389b05d1af10
branch: yt
user: MatthewTurk
date: 2013-02-15 18:55:40
summary: Moving docstrings from __init__ to top-level in merger_tree.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/3a1264bb4425/
changeset: 3a1264bb4425
branch: yt
user: MatthewTurk
date: 2013-02-15 19:01:36
summary: Moving docstrings from __init__ to top-level in radial_column_density.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b418bd1a0c40/
changeset: b418bd1a0c40
branch: yt
user: MatthewTurk
date: 2013-02-15 19:01:50
summary: Moving docstrings from __init__ to top-level in multi_halo_profiler.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ea75ec53e0f8/
changeset: ea75ec53e0f8
branch: yt
user: MatthewTurk
date: 2013-02-15 19:05:05
summary: Moving docstrings from __init__ to top-level in spectral_frequency_integrator.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c53081f66a02/
changeset: c53081f66a02
branch: yt
user: MatthewTurk
date: 2013-02-15 19:06:07
summary: Moving docstrings from __init__ to top-level in sfr_spectrum.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/03ff88f7ddf9/
changeset: 03ff88f7ddf9
branch: yt
user: MatthewTurk
date: 2013-02-15 19:08:05
summary: Moving docstrings from __init__ to top-level in two_point_functions.py
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/247286fdf1c4/
changeset: 247286fdf1c4
branch: yt
user: MatthewTurk
date: 2013-02-15 19:29:17
summary: Restoring a line I missed.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e6e20acd5008/
changeset: e6e20acd5008
branch: yt
user: MatthewTurk
date: 2013-02-15 19:35:30
summary: Fixing a few formatting problems in the docstrings.
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0321b16fd1c1/
changeset: 0321b16fd1c1
branch: yt
user: MatthewTurk
date: 2013-02-15 19:45:26
summary: Addressing Nathan's comment
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5f7b53ad5515/
changeset: 5f7b53ad5515
branch: yt
user: MatthewTurk
date: 2013-02-15 19:55:15
summary: Changing to "interactive" rather than "script" examples.
I don't like having to do this, but Sphinx won't compile otherwise.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/3754278c7cc5/
changeset: 3754278c7cc5
branch: yt
user: MatthewTurk
date: 2013-02-15 20:04:41
summary: Switching some docstrings to NumPy format. Minor formatting elsewhere.
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0158eafd7c35/
changeset: 0158eafd7c35
branch: yt
user: MatthewTurk
date: 2013-02-15 21:48:12
summary: Fixing DerivedField and FixedResolutionBuffer
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/43b4a03be478/
changeset: 43b4a03be478
branch: yt
user: MatthewTurk
date: 2013-02-15 21:49:34
summary: Merging from Britton's change and Kacper's change
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/425e98d5b747/
changeset: 425e98d5b747
branch: yt
user: MatthewTurk
date: 2013-02-15 21:57:36
summary: Missed ProjectionPlot.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a8bda76f28ad/
changeset: a8bda76f28ad
branch: yt
user: chummels
date: 2013-02-14 06:07:37
summary: Adding in support for halo_merger_tree to run on FOF files run by yt's own FOF halo finder. Also adding in support to generate hdf5 files following a specific halo throughout its evolution across timesteps with halo information (mass, position, etc.) included in the output file.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7eb999176655/
changeset: 7eb999176655
branch: yt
user: chummels
date: 2013-02-15 02:03:03
summary: Adding the capability to save an hdf5 file containing a halo's history over a timeseries, as well as a function for plotting that up in a reasonably programmatic way.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9c01dfb37280/
changeset: 9c01dfb37280
branch: yt
user: chummels
date: 2013-02-15 02:10:16
summary: Merging.
affected #: 56 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c58fbed2957c/
changeset: c58fbed2957c
branch: yt
user: chummels
date: 2013-02-15 02:43:05
summary: Added a comment line to header to point to docstring example of how to use full framework.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/533f5ddb9629/
changeset: 533f5ddb9629
branch: yt
user: chummels
date: 2013-02-15 18:41:53
summary: Adding mkdir_rec function for recursively creating subdirs if specified an arbitrary path with n-levels of dirs deep, it creates all of those needed.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/91b1119ef926/
changeset: 91b1119ef926
branch: yt
user: chummels
date: 2013-02-15 19:15:32
summary: Assuring that halo_list outputs directed to an arbitrary path won't fail, as it creates the arbitrary path if it doesn't exist.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/aba16d47f041/
changeset: aba16d47f041
branch: yt
user: chummels
date: 2013-02-15 20:52:21
summary: Adding in feature for passing redshift information through halo finding process and outputting as comment to text file when using .write_out() function. Also adding functions for limiting redshift/cycle range in halo_merger_tree.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/37c784260b3d/
changeset: 37c784260b3d
branch: yt
user: chummels
date: 2013-02-15 21:51:21
summary: Getting halo_merger_tree to be a bit more lax on how it deals with i/o. Allowing user to specify arbitrary FOF directory where all files are read/written.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4c03af8f10b4/
changeset: 4c03af8f10b4
branch: yt
user: chummels
date: 2013-02-15 22:09:46
summary: Making sure all of the halo_merger_tree files are read/written to user-defined FOF_directory.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1f8602ec3b59/
changeset: 1f8602ec3b59
branch: yt
user: chummels
date: 2013-02-15 22:13:27
summary: Correcting syntax thanks to mjturk.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1c455dfdf6ad/
changeset: 1c455dfdf6ad
branch: yt
user: chummels
date: 2013-02-15 22:15:57
summary: Changing print statements to mylog.info statements.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4d3f4edb1936/
changeset: 4d3f4edb1936
branch: yt
user: chummels
date: 2013-02-15 22:20:44
summary: Moving all docstrings to below the class instead of below __init__ func.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5304804e9366/
changeset: 5304804e9366
branch: yt
user: chummels
date: 2013-02-15 22:26:50
summary: Fixing docstrings in halo_objects.py to precede __init__ func calls.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/87ea74c6f95b/
changeset: 87ea74c6f95b
branch: yt
user: chummels
date: 2013-02-15 23:13:11
summary: Fixing bug with dying on halo lineages where a progenitor is too small. Also making accurate recipe in docstrings.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/19b12255a015/
changeset: 19b12255a015
branch: yt
user: chummels
date: 2013-02-15 23:18:11
summary: Merging.
affected #: 31 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/56c9e8e1d092/
changeset: 56c9e8e1d092
branch: yt
user: MatthewTurk
date: 2013-02-16 00:59:27
summary: Minor docfix improvements
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c3411ea9e100/
changeset: c3411ea9e100
branch: yt
user: samskillman
date: 2013-02-17 22:41:05
summary: Adding rescaling and the ability to write_png to an arbitrary background color.
Also adding test of the rescaling, and image writing. I think the image saving
part needs to be moved to some other location, perhaps the docstrings for
write_png itself.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ac79cacd8ccf/
changeset: ac79cacd8ccf
branch: yt
user: samskillman
date: 2013-02-17 22:43:48
summary: Moving rescaling test into docstrings for write_png.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4e7b13877d5f/
changeset: 4e7b13877d5f
branch: yt
user: samskillman
date: 2013-02-17 22:44:20
summary: Removing pdb from amr_kdtree.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9023fb0001c1/
changeset: 9023fb0001c1
branch: yt
user: samskillman
date: 2013-02-17 22:46:10
summary: Cleaning up camera.py image saving internal api. Adding transparent=False call
to snapshot. Making lines() drawing respect alpha channels. replacing
enhance() with a call to ImageArray.rescale().
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6a12037c5194/
changeset: 6a12037c5194
branch: yt
user: samskillman
date: 2013-02-17 23:54:52
summary: Hit two missing my_break calls.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6c695977df16/
changeset: 6c695977df16
branch: yt
user: samskillman
date: 2013-02-18 02:27:47
summary: cam.save_image should rescale by default. Otherwise images are very transparent.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b40286284ba4/
changeset: b40286284ba4
branch: yt
user: samskillman
date: 2013-02-18 04:29:25
summary: Fixing up clip_ratio usage in the image_array. Somewhat sneaky, but produces
good results based on the opaque rendering cookbook.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1d0763085546/
changeset: 1d0763085546
branch: yt
user: samskillman
date: 2013-02-18 04:30:25
summary: Setting up the image_writer to only clip the rgb channels. The alpha channel
should either be left alone if it was given to it, or it should be set to
zeros.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ac10654fa997/
changeset: ac10654fa997
branch: yt
user: samskillman
date: 2013-02-18 04:31:48
summary: Fixing up how the alpha channel is handled for grey_opacity=False renders. It
should be set to the sum of rgb, to later be enhanced or clipped.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/66c8c11fedac/
changeset: 66c8c11fedac
branch: yt
user: samskillman
date: 2013-02-18 18:02:24
summary: Pulling out the background image adding to its own member function.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/bfe01ea7e3d0/
changeset: bfe01ea7e3d0
branch: yt
user: samskillman
date: 2013-02-18 18:03:44
summary: Fixing the lines function to work correctly with 4 channel images. Passing the
correct argument for transparent image saving in camera.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/505f3337e398/
changeset: 505f3337e398
branch: yt
user: samskillman
date: 2013-02-18 18:04:06
summary: Bugfix and docstring update to image_writer.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cb807e4295aa/
changeset: cb807e4295aa
branch: yt
user: samskillman
date: 2013-02-18 18:05:36
summary: Using a better enhance function for the rgb channels. For the drawing of lines
and boxes, we now create a new image and modify that. That way the image isn't
permanently damaged by drawing the domain/grids/lines. Requires updating of
the example scripts.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b4056ecf7c13/
changeset: b4056ecf7c13
branch: yt
user: samskillman
date: 2013-02-18 18:28:01
summary: Whoops, needed inverse here.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7d4f9a3dce41/
changeset: 7d4f9a3dce41
branch: yt
user: samskillman
date: 2013-02-18 18:38:58
summary: This is the simplest way at the moment to preserve the usage of write_bitmap()
for volume renderings, even though I really don't like it. This should be
addressed in the future with a discussion of grey_opacity and a scene object.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/2669c41d4f19/
changeset: 2669c41d4f19
branch: yt
user: samskillman
date: 2013-02-18 19:16:57
summary: Removing __main__ call, putting functionality into data_objects/tests
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0d2a983d8924/
changeset: 0d2a983d8924
branch: yt
user: samskillman
date: 2013-02-19 16:52:56
summary: Fixing up docstrings to obey magic Sphinx power, adding display_in_notebook
as a helper function for displaying images inline in an IPython notebook.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cbd097ca2c1c/
changeset: cbd097ca2c1c
branch: yt
user: ngoldbaum
date: 2013-02-16 01:13:30
summary: PlotCollection is not longer the primary mechanism for generating plots.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9823f77dfcbb/
changeset: 9823f77dfcbb
branch: yt
user: ngoldbaum
date: 2013-02-16 01:37:41
summary: Updating CREDITS, making it alphabetical.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/66cd765ab199/
changeset: 66cd765ab199
branch: yt
user: jzuhone
date: 2013-02-16 19:10:03
summary: Small improvements to the particle generator that I had thought had already been committed, but it turns out they weren't. The notebook at http://blog.yt-project.org/post/ParticleGenerator.html actually assumed these changes(!)
1) The caller no longer has to specify "particle_index" as a field; it is added to the field list automatically by __init__.
2) "ParticleIndices" has been changed to "ParticleGridIndices" to avoid confusion with the "particle_index" field
3) Slight modification to the determination if a particle is in a grid or not, for positions that are exactly on a grid boundary.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/52890207a3ad/
changeset: 52890207a3ad
branch: yt
user: jzuhone
date: 2013-02-16 19:10:23
summary: Shouldn't change this
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5fb26616584a/
changeset: 5fb26616584a
branch: yt
user: jzuhone
date: 2013-02-17 18:20:56
summary: Really should look at the code I'm commiting before I claim I know what it does. The previous change did not have to do with the relationship of particles to grids, but had to do with a check of whether or not the particles were inside the domain.
The right behavior should be that particles are counted as within the domain if their position is greater than or equal to the domain left edge and less than the domain right edge, which is the same behavior as for grids.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7f49529e1bb6/
changeset: 7f49529e1bb6
branch: yt
user: MatthewTurk
date: 2013-02-19 16:56:37
summary: Merged in samskillman/yt (pull request #435)
Upgrades to ImageArray, Camera image saving, handling arbitrary background colors.
affected #: 7 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/93ca9ea45b77/
changeset: 93ca9ea45b77
branch: yt
user: chummels
date: 2013-02-19 23:05:54
summary: Fixing a bug with the halo_merger_tree whereby I make sure the output plots go into the specified directory.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/d14abb6b3387/
changeset: d14abb6b3387
branch: yt
user: chummels
date: 2013-02-20 00:22:09
summary: Adding optional parameters to draw_grids function for VRs to allow one to explicitly specify the level of the grids to overplot.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/db1d8020d9fb/
changeset: db1d8020d9fb
branch: yt
user: samskillman
date: 2013-02-20 01:02:36
summary: Fixing a typo.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f53fb4801dc2/
changeset: f53fb4801dc2
branch: yt
user: mqk
date: 2013-02-19 20:05:25
summary: Added 'hires_dm_mass' keyword to rockstar halo finder, to allow simulations with multiple DM particle masses. Only the highest resolution particles (with mass < 1.1*hires_dm_mass) will be used in the halo finding.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b48e0411316f/
changeset: b48e0411316f
branch: yt
user: mqk
date: 2013-02-20 00:46:52
summary: Small docstring addition.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/09a0fd75818b/
changeset: 09a0fd75818b
branch: yt
user: sskory
date: 2013-02-20 02:49:55
summary: Merged in mqk/yt_clean (pull request #437)
hires_dm_mass keyword to rockstar halo finder
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/41aa542420be/
changeset: 41aa542420be
branch: yt
user: brittonsmith
date: 2013-02-20 17:18:00
summary: Fixing small bug in using to_frb with overlap_proj and without
specifiying width units.
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a381ca6cefef/
changeset: a381ca6cefef
branch: yt
user: samskillman
date: 2013-02-20 18:35:08
summary: setting units to None before trying to figure them out, addressing an issue raised in irc.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9ba8af43485c/
changeset: 9ba8af43485c
branch: yt
user: ngoldbaum
date: 2013-02-20 22:18:51
summary: Fixing a bug in PlotWindow.set_width() that broke specifying the
width and unit as separate keyword parameters.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/d802b5371c6e/
changeset: d802b5371c6e
branch: yt
user: ngoldbaum
date: 2013-02-20 22:20:12
summary: Merged yt_analysis/yt into yt
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/263fa718f240/
changeset: 263fa718f240
branch: yt
user: ngoldbaum
date: 2013-02-21 02:48:02
summary: Making assert_rel_equal cast to numpy arrays to allow comparing lists or tuples.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/608956fd88e1/
changeset: 608956fd88e1
branch: yt
user: ngoldbaum
date: 2013-02-21 02:48:29
summary: Fixing an error that caused (width, width) tuples to be improperly parsed.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c7074d6975cc/
changeset: c7074d6975cc
branch: yt
user: ngoldbaum
date: 2013-02-21 02:48:40
summary: Adding set_width() tests.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e7b647837a13/
changeset: e7b647837a13
branch: yt
user: ngoldbaum
date: 2013-02-21 02:49:22
summary: Merging.
affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e98c2e518d1e/
changeset: e98c2e518d1e
branch: yt
user: ngoldbaum
date: 2013-02-21 02:52:29
summary: Forgot to yield these two tests.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6c92cdaa0dbd/
changeset: 6c92cdaa0dbd
branch: yt
user: MatthewTurk
date: 2013-02-21 22:43:02
summary: Adding grid_corners attribute to GridPropertiesMixin
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/677011d2c4d1/
changeset: 677011d2c4d1
branch: yt-3.0
user: MatthewTurk
date: 2013-01-30 16:43:24
summary: This update fixes Doug's comments on the previous changeset.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/16ef1416b75f/
changeset: 16ef1416b75f
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 03:34:01
summary: wiping data structures, rebuilding from scratch
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f70879f8d3e4/
changeset: f70879f8d3e4
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 04:13:45
summary: wiping the old IO class; keeping the standalone binary file reading functions
affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f07d090d4cd9/
changeset: f07d090d4cd9
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 06:11:43
summary: reorganized static output and definitions, parameters
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f7af6127fb37/
changeset: f7af6127fb37
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 07:27:39
summary: Included the Domain file class
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/576d332c48df/
changeset: 576d332c48df
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 07:58:23
summary: added the domain subset class
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9f3180cef15c/
changeset: 9f3180cef15c
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 08:09:28
summary: added the geometry handler
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b771b95ee0c7/
changeset: b771b95ee0c7
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 08:21:21
summary: forgot about the root grid
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5053ea6af8cd/
changeset: 5053ea6af8cd
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 08:50:15
summary: syntax debuggin
affected #: 5 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5c1df91c4d70/
changeset: 5c1df91c4d70
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 17:26:29
summary: first pass at BaseIO class
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/483977d0ee4e/
changeset: 483977d0ee4e
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 18:19:04
summary: static output now instantiates without a problem
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0d201770a7be/
changeset: 0d201770a7be
branch: yt-3.0
user: juxtaposicion
date: 2012-11-21 20:26:03
summary: hierarchy now loads up AMR structure without failure
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ac17f8293062/
changeset: ac17f8293062
branch: yt-3.0
user: juxtaposicion
date: 2012-11-22 00:18:11
summary: oct_handler works... on a 64^3 grid
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/23456a076101/
changeset: 23456a076101
branch: yt-3.0
user: juxtaposicion
date: 2012-11-22 01:22:45
summary: segfaulting on oct_handler.count_levels
affected #: 1 file
Diff not available.
Repository URL: https://bitbucket.org/yt_analysis/yt-3.0/
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