[yt-svn] Build failed in Jenkins: py2.7-yt-3.0 #38
Jenkins Daemon
jenkins at hum.astri.umk.pl
Thu Jun 13 12:40:53 PDT 2013
See <http://ladon:8080/job/py2.7-yt-3.0/38/changes>
Changes:
[Matthew Turk _matthewturk at gmail.com_] A few minor fixes, including the most important one of how the QuadProj is
initialized on a chunk-by-chunk basis.
[Matthew Turk _matthewturk at gmail.com_] Switching TotalMass to use particle_density.
[Matthew Turk _matthewturk at gmail.com_] Adding particle_position_* to universal_fields.py to make them recognizable as
particle fields. Fixes #592.
------------------------------------------
[...truncated 1252 lines...]
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_mk_xy2pix.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_vec2pix_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_ang2pix_nest.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/VolumeIntegrator.so
building 'yt.utilities.lib.grid_traversal' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC
compile options: '-Iyt/utilities/lib/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-fopenmp'
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/kdtree.c
In file included from /usr/include/python2.7/Python.h:8:0,
from yt/utilities/lib/kdtree.h:29,
from yt/utilities/lib/kdtree.c:32:
/usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
In file included from /usr/include/stdio.h:28:0,
from yt/utilities/lib/kdtree.c:28:
/usr/include/features.h:215:0: note: this is the location of the previous definition
In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/utilities/lib/kdtree.h:30,
from yt/utilities/lib/kdtree.c:32:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_mk_pix2xy.c
x86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c
In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
from build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c:314:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/FixedInterpolator.c
In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/utilities/lib/FixedInterpolator.h:34,
from yt/utilities/lib/FixedInterpolator.c:27:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_pix2vec_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_mk_xy2pix.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_vec2pix_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_ang2pix_nest.c
x86_64-pc-linux-gnu-gcc: yt/utilities/lib/healpix_pix2ang_nest.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/grid_traversal.so -fopenmp
building 'yt.utilities.lib.write_array' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC
compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/write_array.c
In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
from build/src.linux-x86_64-2.7/yt/utilities/lib/write_array.c:314:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/write_array.o -L/usr/lib64 -lpython2.7 -o yt/utilities/lib/write_array.so
building 'yt.utilities.lib.GridTree' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC
compile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c
In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
from build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c:314:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.o -L/usr/lib64 -lm -lpython2.7 -o yt/utilities/lib/GridTree.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: x86_64-pc-linux-gnu-gcc -pthread -fPIC
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/grammar.c
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function '__config_locale_override':
yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
yt/utilities/_libconfig/libconfig.c: In function '__config_locale_restore':
yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/strbuf.c
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/scanner.c
x86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c: In function '__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_4read_file':
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:1026:24: warning: assignment discards 'const' qualifier from pointer target type [enabled by default]
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:1035:24: warning: assignment discards 'const' qualifier from pointer target type [enabled by default]
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c: In function '__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_10get_setting':
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:1563:23: warning: assignment discards 'const' qualifier from pointer target type [enabled by default]
x86_64-pc-linux-gnu-gcc: yt/utilities/_libconfig/scanctx.c
x86_64-pc-linux-gnu-gcc -pthread -shared build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o -L/usr/lib64 -lpython2.7 -o yt/utilities/libconfig_wrapper.so
running scons
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EEE...............EEE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................./usr/lib64/python2.7/site-packages/matplotlib/tight_layout.py:225: UserWarning: tight_layout : falling back to Agg renderer
warnings.warn("tight_layout : falling back to Agg renderer")
...................................................
======================================================================
ERROR: Accessing_TotalMass_1
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/tests/test_fields.py",> line 54, in __call__
deps = field.get_dependencies()
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 465, in get_dependencies
e[self.name]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 398, in _TotalMass
return (data["Density"]+data["particle_density"]) * data["CellVolume"]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 960, in _pdensity
just_one(data['dx']))
File "CICDeposit.pyx", line 34, in yt.utilities.lib.CICDeposit.CICDeposit_3 (yt/utilities/lib/CICDeposit.c:1643)
ValueError: Buffer has wrong number of dimensions (expected 1, got 3)
======================================================================
ERROR: Accessing_TotalMass_4
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/tests/test_fields.py",> line 54, in __call__
deps = field.get_dependencies()
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 465, in get_dependencies
e[self.name]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 398, in _TotalMass
return (data["Density"]+data["particle_density"]) * data["CellVolume"]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 960, in _pdensity
just_one(data['dx']))
File "CICDeposit.pyx", line 34, in yt.utilities.lib.CICDeposit.CICDeposit_3 (yt/utilities/lib/CICDeposit.c:1643)
ValueError: Buffer has wrong number of dimensions (expected 1, got 3)
======================================================================
ERROR: Accessing_TotalMass_8
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/tests/test_fields.py",> line 54, in __call__
deps = field.get_dependencies()
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 465, in get_dependencies
e[self.name]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 398, in _TotalMass
return (data["Density"]+data["particle_density"]) * data["CellVolume"]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 960, in _pdensity
just_one(data['dx']))
File "CICDeposit.pyx", line 34, in yt.utilities.lib.CICDeposit.CICDeposit_3 (yt/utilities/lib/CICDeposit.c:1643)
ValueError: Buffer has wrong number of dimensions (expected 1, got 3)
======================================================================
ERROR: Accessing_TotalMassMsun_1
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/tests/test_fields.py",> line 54, in __call__
deps = field.get_dependencies()
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 465, in get_dependencies
e[self.name]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 398, in _TotalMass
return (data["Density"]+data["particle_density"]) * data["CellVolume"]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 960, in _pdensity
just_one(data['dx']))
File "CICDeposit.pyx", line 34, in yt.utilities.lib.CICDeposit.CICDeposit_3 (yt/utilities/lib/CICDeposit.c:1643)
ValueError: Buffer has wrong number of dimensions (expected 1, got 3)
======================================================================
ERROR: Accessing_TotalMassMsun_4
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/tests/test_fields.py",> line 54, in __call__
deps = field.get_dependencies()
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 465, in get_dependencies
e[self.name]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 398, in _TotalMass
return (data["Density"]+data["particle_density"]) * data["CellVolume"]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 960, in _pdensity
just_one(data['dx']))
File "CICDeposit.pyx", line 34, in yt.utilities.lib.CICDeposit.CICDeposit_3 (yt/utilities/lib/CICDeposit.c:1643)
ValueError: Buffer has wrong number of dimensions (expected 1, got 3)
======================================================================
ERROR: Accessing_TotalMassMsun_8
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/tests/test_fields.py",> line 54, in __call__
deps = field.get_dependencies()
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 465, in get_dependencies
e[self.name]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 398, in _TotalMass
return (data["Density"]+data["particle_density"]) * data["CellVolume"]
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 278, in __missing__
vv = finfo(self)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/field_info_container.py",> line 482, in __call__
dd = self._function(self, data)
File "<http://ladon:8080/job/py2.7-yt-3.0/ws/yt/data_objects/universal_fields.py",> line 960, in _pdensity
just_one(data['dx']))
File "CICDeposit.pyx", line 34, in yt.utilities.lib.CICDeposit.CICDeposit_3 (yt/utilities/lib/CICDeposit.c:1643)
ValueError: Buffer has wrong number of dimensions (expected 1, got 3)
----------------------------------------------------------------------
Ran 2552 tests in 464.791s
FAILED (errors=6)
Build step 'Custom Python Builder' marked build as failure
Recording test results
Unable to auto-install JDK until the license is accepted.
Unable to auto-install JDK until the license is accepted.
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