[yt-svn] Build failed in Jenkins: py2.7-yt-3.0 #46

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See <http://ladon:8080/job/py2.7-yt-3.0/46/changes>

Changes:

[Nathan Goldbaum <goldbaum at ucolick.org>] Merged in MatthewTurk/yt-3.0 (pull request #55)

Reduce overall memory usage and set Enzo particle_mass to be mass always

[Matthew Turk _matthewturk at gmail.com_] Thread cache arguments through the various frontends.

Note that by default, caching is off, but we turn it on when explicitly asking
for an 'all'.  I think this will replicate the behavior users expect.  However,
one thing to keep a look out for is the relative performance of various
operations, and I think we will also want to consider adding either a heuristic
or a contextmanager that will preserve and traverse simultaneously for the
various coordinates.  This would be helpful, for instance, in simulations like
ARTIO where the traversal could potentially be expensive.

This largely completes the enzodiet, as memory usage is now down considerably
-- although not completely -- in my tests.

[Matthew Turk _matthewturk at gmail.com_] Adding cached_property decorator for chunks.

This allows YTDataChunk objects to only optionally track results of operations
like fcoords, fwidth, etc.

[Matthew Turk _matthewturk at gmail.com_] Remove usage of alloca in QuadTree in favor of explicit malloc/free.

[Matthew Turk _matthewturk at gmail.com_] Simplifying particle_mass for Enzo by pushing it all right into the IO routine.

This does change how Enzo's particles are regarded -- but at the benefit of
having much better IO and reduced complexity for calculating particle masses.
I believe this is worth it; we special case for other frontends, and I do not
think it is a problem to do it here.

------------------------------------------
[...truncated 1539 lines...]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Reading 512 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 1 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Reading 512 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 1 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Reading 512 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 1 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Reading 512 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 1 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Reading 512 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 1 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Setting cp_x_vec to [ 1.  0.  0.]
yt: DEBUG: Setting center to [ 0.  0.  0.]
yt: DEBUG: Setting bulk_velocity to [ 0.  0.  0.]
yt: DEBUG: Setting cp_z_vec to [ 0.  0.  1.]
yt: DEBUG: Setting normal to [ 0.  0.  1.]
yt: DEBUG: Setting cp_y_vec to [ 0.  1.  0.]
yt: DEBUG: Setting axis to 0
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['y-velocity', 'x-velocity'] fields in 8 blocks
--------------------- >> end captured logging << ---------------------

----------------------------------------------------------------------
Ran 2548 tests in 366.138s

FAILED (failures=1)
Build step 'Custom Python Builder' marked build as failure
Recording test results