[yt-svn] Build failed in Jenkins: py2.7-yt_analysis-3.0 #23

[Matthew Turk]

Need to upgrade the Cython installation.

On Thu, Jan 10, 2013 at 10:18 AM,  <admin at shiningpanda.com> wrote:
> See <https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/23/>
>
> ------------------------------------------
> Started by user mturk
> Started by user mturk
> [EnvInject] - Loading node environment variables.
> Building remotely on Default Debian 6 - Squeeze .1 in workspace <https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/>
> [py2.7-yt_analysis-3.0] $ hg showconfig paths.default
> Acquired master cache lock.
> [DB2BBDF494DC470827AF9E3C4FF8BD929945AE76-yt-3.0] $ hg pull
> real URL is https://bitbucket.org/yt_analysis/yt-3.0/
> pulling from http://bitbucket.org/yt_analysis/yt-3.0/
> searching for changes
> no changes found
> Master cache lock released.
> Acquired slave node cache lock for node Default Debian 6 - Squeeze .1.
> [DB2BBDF494DC470827AF9E3C4FF8BD929945AE76-yt-3.0] $ hg heads --template {node}\n --topo --closed
> [DB2BBDF494DC470827AF9E3C4FF8BD929945AE76-yt-3.0] $ hg heads --template {node}\n --topo --closed
> Local cache is up to date.
> Slave node cache lock released for node Default Debian 6 - Squeeze .1.
> [py2.7-yt_analysis-3.0] $ hg pull --rev yt-3.0 /home/slave/jenkins/hgcache/DB2BBDF494DC470827AF9E3C4FF8BD929945AE76-yt-3.0
> [py2.7-yt_analysis-3.0] $ hg update --clean --rev yt-3.0
> 0 files updated, 0 files merged, 0 files removed, 0 files unresolved
> [py2.7-yt_analysis-3.0] $ hg log --rev . --template {node}
> [py2.7-yt_analysis-3.0] $ hg log --rev . --template {rev}
> [py2.7-yt_analysis-3.0] $ hg log --rev 789bd796e365b1d277569ac4b0c3c5e0630f4504
> [py2.7-yt_analysis-3.0] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev yt-3.0:0 --follow --prune 789bd796e365b1d277569ac4b0c3c5e0630f4504
> [py2.7-yt_analysis-3.0] $ /bin/sh -xe /tmp/shiningpanda583885075679792879.sh
> + export HDF5_DIR=/home/slave/yt-x86_64/
> + pip install nose coverage pylint
> Requirement already satisfied (use --upgrade to upgrade): nose in /home/slave/yt-x86_64/lib/python2.7/site-packages
> Requirement already satisfied (use --upgrade to upgrade): coverage in /home/slave/yt-x86_64/lib/python2.7/site-packages
> Requirement already satisfied (use --upgrade to upgrade): pylint in /home/slave/yt-x86_64/lib/python2.7/site-packages
> Requirement already satisfied (use --upgrade to upgrade): logilab-common>=0.53.0 in /home/slave/yt-x86_64/lib/python2.7/site-packages (from pylint)
> Requirement already satisfied (use --upgrade to upgrade): logilab-astng>=0.21.1 in /home/slave/yt-x86_64/lib/python2.7/site-packages (from pylint)
> Cleaning up...
> + cd yt/utilities/kdtree
> + make
> Using Forthon ()
> Forthon -F gfortran --compile_first fKD_source --no2underscores --fopt "-O3" fKD fKD_source.f90
> make[1]: Nothing to be done for `dynamic'.
> In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:
> build/temp.linux-x86_64-2.7/Forthon.h:112: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:113: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:114: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:115: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:125: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:126: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:127: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:128: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:147: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:148: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:153: warning: function declaration isn’t a prototype
> build/temp.linux-x86_64-2.7/Forthon.h:154: warning: function declaration isn’t a prototype
> Building package fKD
>   Setup fKD
> mv build/lib*/fKDpy.so .
> + cd ../../..
> + export PYTHONPATH=<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/>
> + /home/slave/yt-x86_64/bin/python setup.py egg_info build_ext -i
> PNG_LOCATION: png found in: /usr/include, /usr/lib
> FTYPE_LOCATION: freetype found in: /usr/include, /usr/lib
> HDF5_LOCATION: HDF5_DIR: /home/slave/yt-x86_64/include, /home/slave/yt-x86_64/lib
> running egg_info
> running build_src
> build_src
> building py_modules sources
> building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources
> building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources
> building extension "yt.frontends.ramses._ramses_reader" sources
> cythonc:> yt/frontends/ramses/_ramses_reader.cpp
> building extension "yt.geometry.oct_container" sources
> cythonc:> yt/geometry/oct_container.c
>
> Error compiling Cython file:
> ------------------------------------------------------------
> ...
>                             if mask[o.local_ind, ii] == 0: continue
>                             dest[local_filled + offset] = source[o.ind, ii]
>                             local_filled += 1
>         return local_filled
>
> cdef public int compare_octs(void *vo1, void *vo2) nogil:
>     ^
> ------------------------------------------------------------
>
> yt/geometry/oct_container.pyx:546:5: Function declared public or api may not have private types
> error: 1 errors while compiling 'yt/geometry/oct_container.pyx' with Cython
> Build step 'Custom Python Builder' marked build as failure
> Recording test results
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