[yt-svn] Build failed in Jenkins: py2.7-yt_analysis-3.0 #21
admin at shiningpanda.com
admin at shiningpanda.com
Thu Jan 10 07:08:08 PST 2013
See <https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/21/changes>
Changes:
[Nathan Goldbaum <goldbaum at ucolick.org>] Merged in MatthewTurk/yt-3.0 (pull request #11: Initial N-body data support)
[Matthew Turk <matthewturk at gmail.com>] This fixes a terribly pernicious indexing bug in the particle octree code and
adds tests for the particle octree.
[Matthew Turk <matthewturk at gmail.com>] Updated to version 0.4.5 of voro++.
[Matthew Turk <matthewturk at gmail.com>] Ensure vector fields are passed through correctly in SPH data.
[Matthew Turk <matthewturk at gmail.com>] Merging.
[Matthew Turk <matthewturk at gmail.com>] Initial import of OWLS frontend. Reads particles, but no known particle fields
yet. No density estimator or fluid deposition.
[Matthew Turk <matthewturk at gmail.com>] Initial import of the 'sph' frontend, which will include a few different types
of SPH output.
[Matthew Turk <matthewturk at gmail.com>] Moving 'gadget' frontend to 'sph,' where it will be made more generic.
[Matthew Turk <matthewturk at gmail.com>] Merging some particle octree work
[Matthew Turk <matthewturk at gmail.com>] Merging from tip
[Matthew Turk <matthewturk at gmail.com>] Adding "count_levels" and making it work for particle octrees. Ready to set up
subsetting and IO.
[Matthew Turk <matthewturk at gmail.com>] Use qsort to sort octs once they have been inserted into the particle octree
container's oct_list.
[Matthew Turk <matthewturk at gmail.com>] Have ParticleOctree collect domains on a per-oct basis, not per-particle.
Mandate only a single domain per Oct.
[Matthew Turk <matthewturk at gmail.com>] Wiping out most of the Gadget frontend, which leads down a rabbit hole of refactoring
[Matthew Turk <matthewturk at gmail.com>] Adding fp_utils include to oct_container.pxd. Ensuring that in the particle
octree container all octs have only a single domain.
[Matthew Turk <matthewturk at gmail.com>] Merge
[Matthew Turk <matthewturk at gmail.com>] Removing a stray save_data call that saved field lists.
------------------------------------------
[...truncated 17320 lines...]
yt: DEBUG: Initializing data storage.
yt: DEBUG: Setting up classes.
yt: DEBUG: Initializing data grid data IO
yt: DEBUG: Setting up domain geometry.
yt: DEBUG: Counting grids.
yt: DEBUG: Initializing grid arrays.
yt: DEBUG: Allocating arrays for 1 grids
yt: DEBUG: Parsing hierarchy.
yt: DEBUG: Copying reverse tree
yt: DEBUG: Preparing grids
yt: DEBUG: Prepared 0 / 1 grids
yt: DEBUG: Prepared
yt: DEBUG: Constructing grid objects.
yt: DEBUG: Re-examining hierarchy
yt: DEBUG: Detecting fields.
yt: DEBUG: Adding unknown detected fields
yt: INFO: Adding unknown field z-velocity to list of fields
yt: INFO: Adding unknown field y-velocity to list of fields
yt: INFO: Adding unknown field x-velocity to list of fields
yt: INFO: Adding unknown field Density to list of fields
yt: DEBUG: Setting up derived fields
yt: DEBUG: Generating vorticity on defaultdict(<function <lambda> at 0x776bd70>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 4096 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 1 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Accessing_AbsDivV_4
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/tests/test_fields.py",> line 70, in __call__
v1 = dd1[self.field_name]
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 199, in __getitem__
self.get_data(key)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 479, in get_data
self.field_data[field] = self._generate_field(field)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 224, in _generate_field
return self._generate_fluid_field(field)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 241, in _generate_fluid_field
for i,chunk in enumerate(self.chunks(field, "spatial", ngz = ngz)):
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 426, in chunks
for chunk in self.hierarchy._chunk(self, chunking_style, **kwargs):
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/geometry/grid_geometry_handler.py",> line 230, in _chunk_spatial
g = og.retrieve_ghost_zones(ngz, [], smoothed=True)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/grid_patch.py",> line 374, in retrieve_ghost_zones
level, new_left_edge, **kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 925, in __init__
YTCoveringGridBase.__init__(self, *args, **kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 782, in __init__
self.get_data(fields)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 937, in get_data
self._get_list_of_grids()
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 788, in _get_list_of_grids
grids,ind = self.pf.hierarchy.get_periodic_box_grids_below_level(
AttributeError: 'StreamHierarchy' object has no attribute 'get_periodic_box_grids_below_level'
-------------------- >> begin captured logging << --------------------
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [16 16 16]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [16 16 16]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: DEBUG: Initializing data storage.
yt: DEBUG: Setting up classes.
yt: DEBUG: Initializing data grid data IO
yt: DEBUG: Setting up domain geometry.
yt: DEBUG: Counting grids.
yt: DEBUG: Initializing grid arrays.
yt: DEBUG: Allocating arrays for 4 grids
yt: DEBUG: Parsing hierarchy.
yt: DEBUG: Copying reverse tree
yt: DEBUG: Preparing grids
yt: DEBUG: Prepared 0 / 4 grids
yt: DEBUG: Prepared
yt: DEBUG: Constructing grid objects.
yt: DEBUG: Re-examining hierarchy
yt: DEBUG: Detecting fields.
yt: DEBUG: Adding unknown detected fields
yt: INFO: Adding unknown field z-velocity to list of fields
yt: INFO: Adding unknown field y-velocity to list of fields
yt: INFO: Adding unknown field x-velocity to list of fields
yt: INFO: Adding unknown field Density to list of fields
yt: DEBUG: Setting up derived fields
yt: DEBUG: Generating vorticity on defaultdict(<function <lambda> at 0x77485f0>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 4096 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 4 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Accessing_AbsDivV_8
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/tests/test_fields.py",> line 70, in __call__
v1 = dd1[self.field_name]
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 199, in __getitem__
self.get_data(key)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 479, in get_data
self.field_data[field] = self._generate_field(field)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 224, in _generate_field
return self._generate_fluid_field(field)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 241, in _generate_fluid_field
for i,chunk in enumerate(self.chunks(field, "spatial", ngz = ngz)):
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/data_containers.py",> line 426, in chunks
for chunk in self.hierarchy._chunk(self, chunking_style, **kwargs):
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/geometry/grid_geometry_handler.py",> line 230, in _chunk_spatial
g = og.retrieve_ghost_zones(ngz, [], smoothed=True)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/grid_patch.py",> line 374, in retrieve_ghost_zones
level, new_left_edge, **kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 925, in __init__
YTCoveringGridBase.__init__(self, *args, **kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 782, in __init__
self.get_data(fields)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 937, in get_data
self._get_list_of_grids()
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 788, in _get_list_of_grids
grids,ind = self.pf.hierarchy.get_periodic_box_grids_below_level(
AttributeError: 'StreamHierarchy' object has no attribute 'get_periodic_box_grids_below_level'
-------------------- >> begin captured logging << --------------------
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [16 16 16]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [16 16 16]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: DEBUG: Initializing data storage.
yt: DEBUG: Setting up classes.
yt: DEBUG: Initializing data grid data IO
yt: DEBUG: Setting up domain geometry.
yt: DEBUG: Counting grids.
yt: DEBUG: Initializing grid arrays.
yt: DEBUG: Allocating arrays for 8 grids
yt: DEBUG: Parsing hierarchy.
yt: DEBUG: Copying reverse tree
yt: DEBUG: Preparing grids
yt: DEBUG: Prepared 0 / 8 grids
yt: DEBUG: Prepared
yt: DEBUG: Constructing grid objects.
yt: DEBUG: Re-examining hierarchy
yt: DEBUG: Detecting fields.
yt: DEBUG: Adding unknown detected fields
yt: INFO: Adding unknown field z-velocity to list of fields
yt: INFO: Adding unknown field y-velocity to list of fields
yt: INFO: Adding unknown field x-velocity to list of fields
yt: INFO: Adding unknown field Density to list of fields
yt: DEBUG: Setting up derived fields
yt: DEBUG: Generating vorticity on defaultdict(<function <lambda> at 0x174a31b8>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 4096 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Failure: AttributeError ('StreamHierarchy' object has no attribute 'get_periodic_box_grids_below_level')
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/loader.py", line 231, in generate
for test in g():
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/tests/test_streamlines.py",> line 18, in test_covering_grid
streams.integrate_through_volume()
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/streamlines.py",> line 142, in integrate_through_volume
step = self._integrate_through_brick(this_brick, stream, step, mag=thismag)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/streamlines.py",> line 157, in _integrate_through_brick
self.volume.get_brick_data(node)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/utilities/amr_kdtree/amr_kdtree.py",> line 703, in get_brick_data
vcd = current_node.grid.get_vertex_centered_data(field,smoothed=True,no_ghost=self.no_ghost).astype('float64')
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/grid_patch.py",> line 407, in get_vertex_centered_data
cg = self.retrieve_ghost_zones(1, field, smoothed=smoothed)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/grid_patch.py",> line 374, in retrieve_ghost_zones
level, new_left_edge, **kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 925, in __init__
YTCoveringGridBase.__init__(self, *args, **kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 782, in __init__
self.get_data(fields)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 937, in get_data
self._get_list_of_grids()
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/construction_data_containers.py",> line 788, in _get_list_of_grids
grids,ind = self.pf.hierarchy.get_periodic_box_grids_below_level(
AttributeError: 'StreamHierarchy' object has no attribute 'get_periodic_box_grids_below_level'
-------------------- >> begin captured logging << --------------------
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [64 64 64]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [64 64 64]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: DEBUG: Initializing data storage.
yt: DEBUG: Setting up classes.
yt: DEBUG: Initializing data grid data IO
yt: DEBUG: Setting up domain geometry.
yt: DEBUG: Counting grids.
yt: DEBUG: Initializing grid arrays.
yt: DEBUG: Allocating arrays for 1 grids
yt: DEBUG: Parsing hierarchy.
yt: DEBUG: Copying reverse tree
yt: DEBUG: Preparing grids
yt: DEBUG: Prepared 0 / 1 grids
yt: DEBUG: Prepared
yt: DEBUG: Constructing grid objects.
yt: DEBUG: Re-examining hierarchy
yt: DEBUG: Detecting fields.
yt: DEBUG: Adding unknown detected fields
yt: INFO: Adding unknown field z-velocity to list of fields
yt: INFO: Adding unknown field y-velocity to list of fields
yt: INFO: Adding unknown field x-velocity to list of fields
yt: INFO: Adding unknown field Density to list of fields
yt: DEBUG: Setting up derived fields
yt: DEBUG: Generating vorticity on defaultdict(<function <lambda> at 0x189a0cf8>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt: DEBUG: It took 3.299713e-04 seconds to build AMRKDTree.tree
yt: DEBUG: Volume is 1.000000e+00
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Failure: AttributeError ('yt.geometry.oct_container.ParticleOctreeContainer' object has no attribute 'count_levels')
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/loader.py", line 231, in generate
for test in g():
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/geometry/tests/test_particle_octree.py",> line 30, in test_add_particles_random
level_count = octree.count_levels(total_count.size-1, -1, mask)
AttributeError: 'yt.geometry.oct_container.ParticleOctreeContainer' object has no attribute 'count_levels'
----------------------------------------------------------------------
Ran 1794 tests in 367.559s
FAILED (errors=26)
Build step 'Custom Python Builder' marked build as failure
Recording test results
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