[yt-svn] Build failed in Jenkins: py2.7-yt_analysis-dev #178

Fri Jan 4 08:28:25 PST 2013

See <https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-dev/178/changes>

Changes:

[Matthew Turk <matthewturk at gmail.com>] Merged in brittonsmith/yt (pull request #389: Added weighted variance derived quantity and tests for average and variance.)

[Britton Smith <brittonsmith at gmail.com>] Empty data objects were causing nans in the weighted variance.

[Britton Smith <brittonsmith at gmail.com>] Adding tests for weighted average and variance derived quantities.

[Britton Smith <brittonsmith at gmail.com>] Adding weighted variance derived quantity.

------------------------------------------
Started by remote host 188.121.252.11 with note: Triggered by push of revision 108341fe239f: "Merged in brittonsmith/yt (pull request #389: Added weighted variance derived quantity and tests for average and variance.)" to https://bitbucket.org/yt_analysis/yt/ by MatthewTurk
[EnvInject] - Loading node environment variables.
Building remotely on Default Debian 6 - Squeeze .1 in workspace <https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-dev/ws/>
[py2.7-yt_analysis-dev] $ hg showconfig paths.default
Acquired master cache lock.
[FD025937AF140079D15BA91CC000F73D482141BF-yt] $ hg pull
real URL is https://bitbucket.org/yt_analysis/yt/
pulling from http://bitbucket.org/yt_analysis/yt/
searching for changes
adding changesets
adding manifests
adding file changes
added 4 changesets with 3 changes to 2 files
(run 'hg update' to get a working copy)
Master cache lock released.
Acquired slave node cache lock for node Default Debian 6 - Squeeze .1.
[FD025937AF140079D15BA91CC000F73D482141BF-yt] $ hg heads --template {node}\n --topo --closed
[FD025937AF140079D15BA91CC000F73D482141BF-yt] $ hg heads --template {node}\n --topo --closed
[FD025937AF140079D15BA91CC000F73D482141BF-yt] $ hg bundle --base 2385290163db579ebf4baa721c7c3e4f07c2b052 --base fd840d83bd32fe1a23910a6184fa7e0bf2e531db --base 59c255148963fdc90204b58f6b613d2012da1357 --base eaeb1423501cd6e7fd15c9a5ddce333ea922a1e3 --base 6fff305ffb8bb9f3c99e854dde60970ffe5f25d4 --base d46d8b73fe698fb1f104c24f90e8a20ce586efbe --base 1af63373e4796615f4093663b81bcc5230347255 --base 86a0d403294fab7a704dbab5f1cae134f22a87f5 --base 94ef428d12913f1f036ffba868a75aa88721af07 --base 041f1470ecf2d5abe59f5717ccb755ad874fc7fb --base 1bec29f8a2a67db1ab7958feb9df9169c46ddbc3 --base d560bb02d2af0072c4da55bbbdc11f8e7d30383f --base f76d9b8342f9c15f3a821b17e7cc821c6d01e046 --base 3fb47750b63d3999ebedbe727eab5513aecd6254 --base f4612e6b3c1e41b94ee712f036219473afc7189e --base b0ef9357ecfca390521c5a678ad7f0fcaf9c3cae --base c6370f52167275b7afb941744eab4c5b1cde72d3 --base a57a3ec829a9204f23e3969ed9c8e18cee2dfc46 --base f0fd92687c31a679b85d4c10dd8900be90c2f258 --base 33dd0836da9e33a110e68245d96f59a0e1db2ca2 --base 644d81878a96fc2d6d58159e1e8cdef0547d3881 --base e3c55655e3bf2f4339b3f14d0492841e66cf9daa --base ba573a42c69cdd23cb3bc4b4f888a3a4182bf18a --base d7d6a4bc66481c94379275a38f43d207217f7c79 --base 0ae23df4c75ec7d398834b1b63cebc138acbaef7 --base 8a462ff16f90501436a95316cddd59543a4834dd --base c1f4c2652dfad71bef54ded1d19c34af2d95a13e --base 872b737e000d886fafc2d4c2cf6fdc476aaf729d --base deb1219e78e82825032eef4430a3a42d7935b8e0 --base 8631b8c53cbdeb2d2e35f67624e2426f6cfeadb5 "xfer-Default Debian 6 - Squeeze .1.hg"
4 changesets found
[FD025937AF140079D15BA91CC000F73D482141BF-yt] $ hg unbundle xfer.hg
adding changesets
adding manifests
adding file changes
added 4 changesets with 3 changes to 2 files
(run 'hg update' to get a working copy)
Slave node cache lock released for node Default Debian 6 - Squeeze .1.
[py2.7-yt_analysis-dev] $ hg pull --rev yt /home/slave/jenkins/hgcache/FD025937AF140079D15BA91CC000F73D482141BF-yt
[py2.7-yt_analysis-dev] $ hg update --clean --rev yt
2 files updated, 0 files merged, 0 files removed, 0 files unresolved
[py2.7-yt_analysis-dev] $ hg log --rev . --template {node}
[py2.7-yt_analysis-dev] $ hg log --rev . --template {rev}
[py2.7-yt_analysis-dev] $ hg log --rev 2385290163db579ebf4baa721c7c3e4f07c2b052
[py2.7-yt_analysis-dev] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev yt:0 --follow --prune 2385290163db579ebf4baa721c7c3e4f07c2b052
[py2.7-yt_analysis-dev] $ /bin/sh -xe /tmp/shiningpanda3066087247477765320.sh
+ export HDF5_DIR=/home/slave/yt-x86_64/
+ pip install nose coverage pylint
Requirement already satisfied (use --upgrade to upgrade): nose in /home/slave/yt-x86_64/lib/python2.7/site-packages
Requirement already satisfied (use --upgrade to upgrade): coverage in /home/slave/yt-x86_64/lib/python2.7/site-packages
Requirement already satisfied (use --upgrade to upgrade): pylint in /home/slave/yt-x86_64/lib/python2.7/site-packages
Requirement already satisfied (use --upgrade to upgrade): logilab-common>=0.53.0 in /home/slave/yt-x86_64/lib/python2.7/site-packages (from pylint)
Requirement already satisfied (use --upgrade to upgrade): logilab-astng>=0.21.1 in /home/slave/yt-x86_64/lib/python2.7/site-packages (from pylint)
Cleaning up...
+ cd yt/utilities/kdtree
+ make
Using Forthon ()
Forthon -F gfortran --compile_first fKD_source --no2underscores --fopt "-O3" fKD fKD_source.f90
make[1]: Nothing to be done for `dynamic'.
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:
build/temp.linux-x86_64-2.7/Forthon.h:112: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:113: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:114: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:115: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:125: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:126: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:127: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:128: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:147: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:148: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:153: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:154: warning: function declaration isn’t a prototype
Building package fKD
  Setup fKD
mv build/lib*/fKDpy.so .
+ cd ../../..
+ export PYTHONPATH=<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-dev/ws/>
+ /home/slave/yt-x86_64/bin/python setup.py egg_info build_ext -i
PNG_LOCATION: png found in: /usr/include, /usr/lib
FTYPE_LOCATION: freetype found in: /usr/include, /usr/lib
HDF5_LOCATION: HDF5_DIR: /home/slave/yt-x86_64/include, /home/slave/yt-x86_64/lib
running egg_info
running build_src
build_src
building py_modules sources
building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources
building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources
building extension "yt.frontends.ramses._ramses_reader" sources
building extension "yt.utilities.delaunay._delaunay" sources
building extension "yt.utilities.spatial.ckdtree" sources
building extension "yt.utilities.spatial._distance_wrap" sources
building extension "yt.utilities.lib.CICDeposit" sources
building extension "yt.utilities.lib.ContourFinding" sources
building extension "yt.utilities.lib.DepthFirstOctree" sources
building extension "yt.utilities.lib.fortran_reader" sources
building extension "yt.utilities.lib.freetype_writer" sources
building extension "yt.utilities.lib.geometry_utils" sources
building extension "yt.utilities.lib.Interpolators" sources
building extension "yt.utilities.lib.marching_cubes" sources
building extension "yt.utilities.lib.misc_utilities" sources
building extension "yt.utilities.lib.Octree" sources
building extension "yt.utilities.lib.png_writer" sources
building extension "yt.utilities.lib.PointsInVolume" sources
building extension "yt.utilities.lib.QuadTree" sources
building extension "yt.utilities.lib.RayIntegrators" sources
building extension "yt.utilities.lib.VolumeIntegrator" sources
building extension "yt.utilities.lib.grid_traversal" sources
building extension "yt.utilities.lib.GridTree" sources
building extension "yt.utilities.data_point_utilities" sources
building extension "yt.utilities.hdf5_light_reader" sources
building extension "yt.utilities.libconfig_wrapper" sources
building extension "yt.visualization._MPL" sources
building data_files sources
build_src: building npy-pkg config files
writing yt.egg-info/PKG-INFO
writing top-level names to yt.egg-info/top_level.txt
writing dependency_links to yt.egg-info/dependency_links.txt
writing entry points to yt.egg-info/entry_points.txt
reading manifest file 'yt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'yt.egg-info/SOURCES.txt'
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
running scons
+ /home/slave/yt-x86_64/bin/python setup.py nosetests --with-answer-testing
PNG_LOCATION: png found in: /usr/include, /usr/lib
FTYPE_LOCATION: freetype found in: /usr/include, /usr/lib
HDF5_LOCATION: HDF5_DIR: /home/slave/yt-x86_64/include, /home/slave/yt-x86_64/lib
running nosetests
running egg_info
running build_src
build_src
building py_modules sources
building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources
building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources
building extension "yt.frontends.ramses._ramses_reader" sources
building extension "yt.utilities.delaunay._delaunay" sources
building extension "yt.utilities.spatial.ckdtree" sources
building extension "yt.utilities.spatial._distance_wrap" sources
building extension "yt.utilities.lib.CICDeposit" sources
building extension "yt.utilities.lib.ContourFinding" sources
building extension "yt.utilities.lib.DepthFirstOctree" sources
building extension "yt.utilities.lib.fortran_reader" sources
building extension "yt.utilities.lib.freetype_writer" sources
building extension "yt.utilities.lib.geometry_utils" sources
building extension "yt.utilities.lib.Interpolators" sources
building extension "yt.utilities.lib.marching_cubes" sources
building extension "yt.utilities.lib.misc_utilities" sources
building extension "yt.utilities.lib.Octree" sources
building extension "yt.utilities.lib.png_writer" sources
building extension "yt.utilities.lib.PointsInVolume" sources
building extension "yt.utilities.lib.QuadTree" sources
building extension "yt.utilities.lib.RayIntegrators" sources
building extension "yt.utilities.lib.VolumeIntegrator" sources
building extension "yt.utilities.lib.grid_traversal" sources
building extension "yt.utilities.lib.GridTree" sources
building extension "yt.utilities.data_point_utilities" sources
building extension "yt.utilities.hdf5_light_reader" sources
building extension "yt.utilities.libconfig_wrapper" sources
building extension "yt.visualization._MPL" sources
building data_files sources
build_src: building npy-pkg config files
writing yt.egg-info/PKG-INFO
writing top-level names to yt.egg-info/top_level.txt
writing dependency_links to yt.egg-info/dependency_links.txt
writing entry points to yt.egg-info/entry_points.txt
reading manifest file 'yt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'yt.egg-info/SOURCES.txt'
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
running scons
.........................................................................................................................................................................................................................................................................................................................................F................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
======================================================================
FAIL: test_derived_quantities.test_average(0.66166283858420361, 0.66166283858420005, 14)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-dev/ws/yt/testing.py",> line 43, in assert_rel_equal
    verbose=verbose)
  File "/home/slave/yt-x86_64/lib/python2.7/site-packages/numpy/testing/utils.py", line 468, in assert_almost_equal
    raise AssertionError(msg)
AssertionError: 
Arrays are not almost equal to 14 decimals
 ACTUAL: 1.0000000000000053
 DESIRED: 1.0
>>  raise AssertionError('\nArrays are not almost equal to 14 decimals\n ACTUAL: 1.0000000000000053\n DESIRED: 1.0')

-------------------- >> begin captured logging << --------------------
yt: DEBUG: Going to obtain ['CellMass']
yt: DEBUG: Going to obtain ['CellVolume']
yt: DEBUG: Going to obtain ['dx']
yt: INFO: Getting field dx from 4
yt: DEBUG: Going to obtain ['dy']
yt: INFO: Getting field dy from 4
yt: DEBUG: Going to obtain ['dz']
yt: INFO: Getting field dz from 4
--------------------- >> end captured logging << ---------------------

----------------------------------------------------------------------
Ran 2154 tests in 641.288s

FAILED (failures=1)
Build step 'Custom Python Builder' marked build as failure
Recording test results