[yt-svn] commit/yt: 2 new changesets

Bitbucket commits-noreply at bitbucket.org
Fri Feb 15 16:07:56 PST 2013


2 new commits in yt:

https://bitbucket.org/yt_analysis/yt/commits/329d11eeff22/
changeset:   329d11eeff22
branch:      stable
user:        MatthewTurk
date:        2013-02-16 00:59:27
summary:     Minor docfix improvements
affected #:  3 files

diff -r 6b246ba83cb38d6fd2467bf76e265e6ca4f78beb -r 329d11eeff224ed16d054e989680ba6f193318e9 yt/analysis_modules/halo_merger_tree/enzofof_merger_tree.py
--- a/yt/analysis_modules/halo_merger_tree/enzofof_merger_tree.py
+++ b/yt/analysis_modules/halo_merger_tree/enzofof_merger_tree.py
@@ -730,8 +730,22 @@
     x_quantity, y_quantity : str, optional
         The quantity that you want to plot as the x_coord (or y_coords).
         Valid options are:
-            cycle, mass, fraction, halo_id, redshift, dense_x, dense_y, dense_z
-            COM_x, COM_y, COM_z, COM_vx, COM_vy, COM_vz
+
+           * cycle
+           * mass
+           * fraction
+           * halo_id
+           * redshift
+           * dense_x
+           * dense_y
+           * dense_z
+           * COM_x
+           * COM_y
+           * COM_z
+           * COM_vx
+           * COM_vy
+           * COM_vz
+
     x_log, y_log : bool, optional
         Do you want the x(y)-axis to be in log or linear?
     FOF_directory : str, optional
@@ -739,23 +753,23 @@
 
     Examples
     --------
-    # generates mass history plots for the 20 most massive halos at t_fin.
 
-    ts = TimeSeriesData.from_filenames("DD????/DD????")
-
-    # long step--must run FOF on each DD, but saves outputs for later use
-    for pf in ts:   
-        halo_list = FOFHaloFinder(pf)
-        i = int(pf.basename[2:])
-        halo_list.write_out("FOF/groups_%05i.txt" % i)
-        halo_list.write_particle_lists("FOF/particles_%05i" % i)
-
-    mt = EnzoFOFMergerTree(external_FOF=False)
-    for i in range(20):
-        mt.build_tree(i)
-        mt.save_halo_evolution('halos.h5')
-    for i in range(20):
-        plot_halo_evolution('halos.h5', i)
+    >>> # generates mass history plots for the 20 most massive halos at t_fin.
+    >>> ts = TimeSeriesData.from_filenames("DD????/DD????")
+    >>> # long step--must run FOF on each DD, but saves outputs for later use
+    >>> for pf in ts:   
+    ...     halo_list = FOFHaloFinder(pf)
+    ...     i = int(pf.basename[2:])
+    ...     halo_list.write_out("FOF/groups_%05i.txt" % i)
+    ...     halo_list.write_particle_lists("FOF/particles_%05i" % i)
+    ...
+    >>> mt = EnzoFOFMergerTree(external_FOF=False)
+    >>> for i in range(20):
+    ...     mt.build_tree(i)
+    ...     mt.save_halo_evolution('halos.h5')
+    ...
+    >>> for i in range(20):
+    ...     plot_halo_evolution('halos.h5', i)
     """
     import matplotlib.pyplot as plt
     f = h5py.File("%s/%s" % (FOF_directory, filename), 'r')

diff -r 6b246ba83cb38d6fd2467bf76e265e6ca4f78beb -r 329d11eeff224ed16d054e989680ba6f193318e9 yt/data_objects/data_containers.py
--- a/yt/data_objects/data_containers.py
+++ b/yt/data_objects/data_containers.py
@@ -4523,24 +4523,22 @@
         Examples
         --------
 
-        from yt.mods import *
-        pf = load("redshift0058")
-        dd = pf.h.sphere("max", (200, "kpc"))
-        rho = 5e-27
-
-        bounds = [(dd.center[i] - 100.0/pf['kpc'],
-                   dd.center[i] + 100.0/pf['kpc']) for i in range(3)]
-
-        surf = pf.h.surface(dd, "Density", rho)
-
-        rv = surf.export_sketchfab(
-            title = "Testing Upload",
-            description = "A simple test of the uploader",
-            color_field = "Temperature",
-            color_map = "hot",
-            color_log = True,
-            bounds = bounds
-        )
+        >>> from yt.mods import *
+        >>> pf = load("redshift0058")
+        >>> dd = pf.h.sphere("max", (200, "kpc"))
+        >>> rho = 5e-27
+        >>> bounds = [(dd.center[i] - 100.0/pf['kpc'],
+        ...            dd.center[i] + 100.0/pf['kpc']) for i in range(3)]
+        ...
+        >>> surf = pf.h.surface(dd, "Density", rho)
+        >>> rv = surf.export_sketchfab(
+        ...     title = "Testing Upload",
+        ...     description = "A simple test of the uploader",
+        ...     color_field = "Temperature",
+        ...     color_map = "hot",
+        ...     color_log = True,
+        ...     bounds = bounds)
+        ...
         """
         api_key = api_key or ytcfg.get("yt","sketchfab_api_key")
         if api_key in (None, "None"):

diff -r 6b246ba83cb38d6fd2467bf76e265e6ca4f78beb -r 329d11eeff224ed16d054e989680ba6f193318e9 yt/testing.py
--- a/yt/testing.py
+++ b/yt/testing.py
@@ -172,7 +172,7 @@
     keyword arguments and all of the values for these arguments that you
     want to test.
 
-    It will return a list of **kwargs dicts containing combinations of
+    It will return a list of kwargs dicts containing combinations of
     the various kwarg values you passed it.  These can then be passed
     to the appropriate function in nosetests. 
 


https://bitbucket.org/yt_analysis/yt/commits/56c9e8e1d092/
changeset:   56c9e8e1d092
branch:      yt
user:        MatthewTurk
date:        2013-02-16 00:59:27
summary:     Minor docfix improvements
affected #:  3 files

diff -r 19b12255a0157c5d1b3c512da18b77066f289d38 -r 56c9e8e1d0920d28c93e6b03d39097079466c17c yt/analysis_modules/halo_merger_tree/enzofof_merger_tree.py
--- a/yt/analysis_modules/halo_merger_tree/enzofof_merger_tree.py
+++ b/yt/analysis_modules/halo_merger_tree/enzofof_merger_tree.py
@@ -730,8 +730,22 @@
     x_quantity, y_quantity : str, optional
         The quantity that you want to plot as the x_coord (or y_coords).
         Valid options are:
-            cycle, mass, fraction, halo_id, redshift, dense_x, dense_y, dense_z
-            COM_x, COM_y, COM_z, COM_vx, COM_vy, COM_vz
+
+           * cycle
+           * mass
+           * fraction
+           * halo_id
+           * redshift
+           * dense_x
+           * dense_y
+           * dense_z
+           * COM_x
+           * COM_y
+           * COM_z
+           * COM_vx
+           * COM_vy
+           * COM_vz
+
     x_log, y_log : bool, optional
         Do you want the x(y)-axis to be in log or linear?
     FOF_directory : str, optional
@@ -739,23 +753,23 @@
 
     Examples
     --------
-    # generates mass history plots for the 20 most massive halos at t_fin.
 
-    ts = TimeSeriesData.from_filenames("DD????/DD????")
-
-    # long step--must run FOF on each DD, but saves outputs for later use
-    for pf in ts:   
-        halo_list = FOFHaloFinder(pf)
-        i = int(pf.basename[2:])
-        halo_list.write_out("FOF/groups_%05i.txt" % i)
-        halo_list.write_particle_lists("FOF/particles_%05i" % i)
-
-    mt = EnzoFOFMergerTree(external_FOF=False)
-    for i in range(20):
-        mt.build_tree(i)
-        mt.save_halo_evolution('halos.h5')
-    for i in range(20):
-        plot_halo_evolution('halos.h5', i)
+    >>> # generates mass history plots for the 20 most massive halos at t_fin.
+    >>> ts = TimeSeriesData.from_filenames("DD????/DD????")
+    >>> # long step--must run FOF on each DD, but saves outputs for later use
+    >>> for pf in ts:   
+    ...     halo_list = FOFHaloFinder(pf)
+    ...     i = int(pf.basename[2:])
+    ...     halo_list.write_out("FOF/groups_%05i.txt" % i)
+    ...     halo_list.write_particle_lists("FOF/particles_%05i" % i)
+    ...
+    >>> mt = EnzoFOFMergerTree(external_FOF=False)
+    >>> for i in range(20):
+    ...     mt.build_tree(i)
+    ...     mt.save_halo_evolution('halos.h5')
+    ...
+    >>> for i in range(20):
+    ...     plot_halo_evolution('halos.h5', i)
     """
     import matplotlib.pyplot as plt
     f = h5py.File("%s/%s" % (FOF_directory, filename), 'r')

diff -r 19b12255a0157c5d1b3c512da18b77066f289d38 -r 56c9e8e1d0920d28c93e6b03d39097079466c17c yt/data_objects/data_containers.py
--- a/yt/data_objects/data_containers.py
+++ b/yt/data_objects/data_containers.py
@@ -4523,24 +4523,22 @@
         Examples
         --------
 
-        from yt.mods import *
-        pf = load("redshift0058")
-        dd = pf.h.sphere("max", (200, "kpc"))
-        rho = 5e-27
-
-        bounds = [(dd.center[i] - 100.0/pf['kpc'],
-                   dd.center[i] + 100.0/pf['kpc']) for i in range(3)]
-
-        surf = pf.h.surface(dd, "Density", rho)
-
-        rv = surf.export_sketchfab(
-            title = "Testing Upload",
-            description = "A simple test of the uploader",
-            color_field = "Temperature",
-            color_map = "hot",
-            color_log = True,
-            bounds = bounds
-        )
+        >>> from yt.mods import *
+        >>> pf = load("redshift0058")
+        >>> dd = pf.h.sphere("max", (200, "kpc"))
+        >>> rho = 5e-27
+        >>> bounds = [(dd.center[i] - 100.0/pf['kpc'],
+        ...            dd.center[i] + 100.0/pf['kpc']) for i in range(3)]
+        ...
+        >>> surf = pf.h.surface(dd, "Density", rho)
+        >>> rv = surf.export_sketchfab(
+        ...     title = "Testing Upload",
+        ...     description = "A simple test of the uploader",
+        ...     color_field = "Temperature",
+        ...     color_map = "hot",
+        ...     color_log = True,
+        ...     bounds = bounds)
+        ...
         """
         api_key = api_key or ytcfg.get("yt","sketchfab_api_key")
         if api_key in (None, "None"):

diff -r 19b12255a0157c5d1b3c512da18b77066f289d38 -r 56c9e8e1d0920d28c93e6b03d39097079466c17c yt/testing.py
--- a/yt/testing.py
+++ b/yt/testing.py
@@ -172,7 +172,7 @@
     keyword arguments and all of the values for these arguments that you
     want to test.
 
-    It will return a list of **kwargs dicts containing combinations of
+    It will return a list of kwargs dicts containing combinations of
     the various kwarg values you passed it.  These can then be passed
     to the appropriate function in nosetests.

Repository URL: https://bitbucket.org/yt_analysis/yt/

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