[yt-svn] commit/yt-doc: 12 new changesets
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Fri Feb 15 12:53:39 PST 2013
12 new commits in yt-doc:
https://bitbucket.org/yt_analysis/yt-doc/commits/ff77fad3d40c/
changeset: ff77fad3d40c
user: MatthewTurk
date: 2013-02-14 18:13:40
summary: Minor fix for TOC
affected #: 1 file
diff -r 10d193666ddcab9af3a467675c7f2d410c1f3e09 -r ff77fad3d40c7a42ee8be5a5326f615d6057d02d source/index.rst
--- a/source/index.rst
+++ b/source/index.rst
@@ -8,7 +8,7 @@
yt provides full support for several simulation codes in the current release:
- * `Enzo <http://enzo-project.org/>`_ Orion,
+ * `Enzo <http://enzo-project.org/>`_
* Orion
* `Nyx <https://ccse.lbl.gov/Research/NYX/index.html>`_
* `FLASH <http://flash.uchicago.edu/website/home/>`_
https://bitbucket.org/yt_analysis/yt-doc/commits/6632a05fb75c/
changeset: 6632a05fb75c
user: MatthewTurk
date: 2013-02-14 20:48:51
summary: Adding Changelog for 2.5 and adding new contributors.
affected #: 1 file
diff -r ff77fad3d40c7a42ee8be5a5326f615d6057d02d -r 6632a05fb75c88920525700de4c70829f9d21544 source/changelog.rst
--- a/source/changelog.rst
+++ b/source/changelog.rst
@@ -13,19 +13,25 @@
* Tom Abel
* David Collins
+ * Brian Crosby
* Andrew Cunningham
* Nathan Goldbaum
+ * Markus Haider
* Cameron Hummels
+ * Christian Karch
* Ji-hoon Kim
* Steffen Klemer
* Kacper Kowalik
* Michael Kuhlen
* Eve Lee
+ * Yuan Li
* Chris Malone
+ * Josh Moloney
* Chris Moody
* Andrew Myers
* Jeff Oishi
* Jean-Claude Passy
+ * Mark Richardson
* Thomass Robitaille
* Anna Rosen
* Anthony Scopatz
@@ -33,14 +39,104 @@
* Sam Skillman
* Stephen Skory
* Britton Smith
- * Geoffrey So
+ * Geoffrey So
* Casey Stark
* Elizabeth Tasker
+ * Stephanie Tonnesen
* Matthew Turk
* Rick Wagner
* John Wise
* John ZuHone
+Version 2.5
+-----------
+
+Many below-the-surface changes happened in yt 2.5 to improve reliability,
+fidelity of the answers, and streamlined user interface. The major change in
+this release has been the immense expansion in testing of yt. We now have over
+2000 unit tests (run on every commit, thanks to both Kacper Kowalik and Shining
+Panda) as well as answer testing for FLASH, Enzo, Chombo and Orion data.
+
+The Stream frontend, which can construct datasets in memory, has been improved
+considerably. It's now easier than ever to load data from disk. If you know
+how to get volumetric data into Python, you can use either the
+`load_uniform_grid` function or the `load_amr_grid` function to create an
+in-memory parameter file that yt can analyze.
+
+yt now supports the Athena code.
+
+yt is now focusing on providing first class support for the IPython notebook.
+In this release, plots can be displayed inline. The Reason HTML5 GUI will be
+merged with the IPython notebook in a future release.
+
+Install Script Changes:
+~~~~~~~~~~~~~~~~~~~~~~~
+
+ * SciPy can now be installed
+ * Rockstar can now be installed
+ * Dependencies can be updated with "yt update --all"
+ * Cython has been upgraded to 0.17.1
+ * Python has been upgraded to 2.7.3
+ * h5py has been upgraded to 2.1.0
+ * hdf5 has been upgraded to 1.8.9
+ * matplotlib has been upgraded to 1.2.0
+ * IPython has been upgraded to 0.13.1
+ * Forthon has been upgraded to 0.8.10
+ * nose has been added
+ * sympy has been added
+ * python-hglib has been added
+
+Most Visible Improvements
+~~~~~~~~~~~~~~~~~~~~~~~~~
+
+ * Nearly 200 pull requests and over 1000 changesets have been merged since yt
+ 2.4 was release on August 2nd, 2012.
+ * numpy is now imported as np, not na. na will continue to work for the
+ foreseeable future.
+ * yt can now load simulation data created by Athena.
+ * The Rockstar halo finder can now be installed by the install script
+ * SciPy can now be installed by the install script
+ * Data can now be written out in two ways:
+ * Sidecar files containing expensive derived fields can be written and
+ implicitly loaded from.
+ * GDF files, which are portable yt-specific representations of full
+ simulations, can be created from any parameter file. Work is underway on
+ a pure C library that can be linked against to load these files into
+ simulations.
+ * The "Stream" frontend, for loading raw data in memory, has been greatly
+ expanded and now includes initial conditions generation functionality,
+ particle fields, and simple loading of AMR grids with `load_amr_grids`.
+ * Spherical and Cylindrical fields have been sped up and made to have a
+ uniform interface. These fields can be the building blocks of more advanced
+ fields.
+ * Many improvements to the EnzoSimulation class, which can now find many
+ different types of data.
+ * Image data is now encapsulated in an ImageArray class, which carries with it
+ provenance information about its trajectory through yt.
+ * Streamlines now query at every step along the streamline, not just at every
+ cell.
+ * Surfaces can now be extracted and examined, as well as uploaded to
+ Sketchfab.com for interactive visualization in a web browser.
+ * allsky_projection can now accept a datasource, making it easier to cut out
+ regions to examine.
+ * Many, many improvements to PlotWindow. If you're still using
+ PlotCollection, check out `ProjectionPlot`, `SlicePlot`,
+ `OffAxisProjectionPlot` and `CuttingPlanePlot`.
+ * PlotWindow can now accept a timeseries instead of a parameter file.
+ * Many fixes for 1D and 2D data, especially in FLASH datasets.
+ * Vast improvements to the particle file handling for FLASH datasets.
+ * Particles can now be created ex nihilo with CICSample_3.
+ * Rockstar halo finding is now a targeted goal. Support for using Rockstar
+ has improved dramatically.
+ * The command `yt notebook` has been added to spawn an IPython notebook
+ server, and the `yt.imods` module can replace `yt.mods` in the IPython
+ Notebook to enable better integration.
+ * Metallicity-dependent X-ray fields have now been added.
+ * Grid lines can now be added to voluem renderings.
+ * Periodicity, or alternately non-periodicity, is now a part of radius
+ calculations.
+ * AMRKDTree has been rewritten to allow for sub-region selection.
+
Version 2.4
-----------
https://bitbucket.org/yt_analysis/yt-doc/commits/9e893bc32dc3/
changeset: 9e893bc32dc3
user: MatthewTurk
date: 2013-02-14 20:56:42
summary: Minor changes from Nathan
affected #: 1 file
diff -r 6632a05fb75c88920525700de4c70829f9d21544 -r 9e893bc32dc30447c3955ebb0b82c863e004cd0e source/changelog.rst
--- a/source/changelog.rst
+++ b/source/changelog.rst
@@ -86,6 +86,8 @@
* sympy has been added
* python-hglib has been added
+We've also improved support for installing on OSX, Ubuntu and OpenSUSE.
+
Most Visible Improvements
~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -121,7 +123,7 @@
regions to examine.
* Many, many improvements to PlotWindow. If you're still using
PlotCollection, check out `ProjectionPlot`, `SlicePlot`,
- `OffAxisProjectionPlot` and `CuttingPlanePlot`.
+ `OffAxisProjectionPlot` and `OffAxisSlicePlot`.
* PlotWindow can now accept a timeseries instead of a parameter file.
* Many fixes for 1D and 2D data, especially in FLASH datasets.
* Vast improvements to the particle file handling for FLASH datasets.
https://bitbucket.org/yt_analysis/yt-doc/commits/89878601315b/
changeset: 89878601315b
user: MatthewTurk
date: 2013-02-14 21:01:49
summary: Adding cheat sheet to changelog, although the link is currently dead.
affected #: 2 files
diff -r 9e893bc32dc30447c3955ebb0b82c863e004cd0e -r 89878601315b65b8d9e9f361d11780f89850333a source/changelog.rst
--- a/source/changelog.rst
+++ b/source/changelog.rst
@@ -95,6 +95,7 @@
2.4 was release on August 2nd, 2012.
* numpy is now imported as np, not na. na will continue to work for the
foreseeable future.
+ * You can now get a `yt cheat sheet <http://yt-project.org/docs/2.5/cheat_sheet.pdf>`!
* yt can now load simulation data created by Athena.
* The Rockstar halo finder can now be installed by the install script
* SciPy can now be installed by the install script
diff -r 9e893bc32dc30447c3955ebb0b82c863e004cd0e -r 89878601315b65b8d9e9f361d11780f89850333a source/index.rst
--- a/source/index.rst
+++ b/source/index.rst
@@ -104,6 +104,17 @@
</td></tr>
+ <tr valign="top">
+ <td width="25%">
+ <p>
+ <a href="cheat_sheet.pdf">Cheat Sheet</a>
+ </p>
+ </td>
+ <td width="75%">
+ <p class="linkdescr">A cheat sheet for yt you can print out</p>
+ </td>
+ </tr>
+
</table><h2>User Guide</h2>
https://bitbucket.org/yt_analysis/yt-doc/commits/e704f8be49de/
changeset: e704f8be49de
user: MatthewTurk
date: 2013-02-14 21:02:40
summary: Adding coordinate vector bullet point
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-doc/commits/396e38d280f3/
changeset: 396e38d280f3
user: MatthewTurk
date: 2013-02-14 21:09:00
summary: cheat_sheet => cheatsheet
affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-doc/commits/abf162bb40f1/
changeset: abf162bb40f1
user: MatthewTurk
date: 2013-02-14 21:40:27
summary: Double back-ticking in the Changelog.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-doc/commits/29016cf8f31b/
changeset: 29016cf8f31b
user: MatthewTurk
date: 2013-02-15 13:26:36
summary: Typo and alpha fix.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-doc/commits/bf2474c8329d/
changeset: bf2474c8329d
user: MatthewTurk
date: 2013-02-15 19:50:56
summary: API: Removing unused or deprecated items and adding a bunch of stuff that
should have been there before.
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-doc/commits/fffc5b2ddf71/
changeset: fffc5b2ddf71
user: MatthewTurk
date: 2013-02-15 20:04:04
summary: Quick fix for formatting in changelog
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-doc/commits/3fb3fe104ead/
changeset: 3fb3fe104ead
user: MatthewTurk
date: 2013-02-15 21:50:26
summary: Add OffAxisProjectionPlot and removing PlotWindow from API docs
affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-doc/commits/625134b9038e/
changeset: 625134b9038e
user: MatthewTurk
date: 2013-02-15 21:53:33
summary: Merged in MatthewTurk/yt-doc (pull request #74)
Changelog update
affected #: 3 files
Diff not available.
Repository URL: https://bitbucket.org/yt_analysis/yt-doc/
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