[yt-svn] Build failed in Jenkins: yt - galaxy0030 #87
matthewturk at gmail.com
matthewturk at gmail.com
Wed Jan 25 23:04:27 PST 2012
See <http://localhost:8080/job/yt%20-%20galaxy0030/87/changes>
Changes:
[Matthew Turk <matthewturk at gmail.com>] Left PyX on by default -- turning off.
[Matthew Turk <matthewturk at gmail.com>] Adding readline to the install script if it can't be imported.
[Matthew Turk <matthewturk at gmail.com>] Thanks to ngoldbaum, a fix for the ranger notes
[Matthew Turk <matthewturk at gmail.com>] Merging
[Matthew Turk <matthewturk at gmail.com>] Adding PyX to the install script (off-by-default)
[Christopher Moody <cemoody at ucsc.edu>] 5x speedup. ART code now uses the RAMSES cythonized patch splitting code.
[Christopher Moody <cemoody at ucsc.edu>] 5x speedup in ART frontend. Now uses RAMSES cythonized patch splitting.
[Matthew Turk <matthewturk at gmail.com>] Fixing unnecessary printing when running command line tool. Adding parsing of
tuples of (value, unit) for radius and height in disks. Ensuring the supplying
"max" to the disk initializer works.
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[...truncated 707 lines...]
build/temp.linux-x86_64-2.7/fKDpymodule.c:157:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_free_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:188:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_find_many_r_nearest’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:245:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘tree_nodedeclarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:678:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘kdtree2declarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:865:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:881:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:897:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘tree_setdeclarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:1176:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1192:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1208:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1224:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1240:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1256:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1272:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1288:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1304:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1320:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1336:29: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: At top level:
build/temp.linux-x86_64-2.7/Forthon.h:194:15: warning: ‘cputime’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:574:18: warning: ‘Forthon_getscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:580:18: warning: ‘Forthon_getarraydict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:910:12: warning: ‘Forthon_setscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:916:12: warning: ‘Forthon_setarraydict’ defined but not used [-Wunused-function]
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/Forthon.c -o build/temp.linux-x86_64-2.7/Forthon.o
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/fKDpymodule.o build/temp.linux-x86_64-2.7/Forthon.o build/temp.linux-x86_64-2.7/fKD.o build/temp.linux-x86_64-2.7/fKD_p.o build/temp.linux-x86_64-2.7/fKD_source.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/home/mturk/yt-x86_64/lib -lgfortran -lpython2.7 -o ./fKDpy.so
+ cd ../../..
[workspace] $ /bin/sh -xe /tmp/hudson6023870947921787689.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold -f /home/mturk/Research/data/JHK-DD0030/galaxy0030
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Initializing TestRegistry
Initializing test_registry
This call to matplotlib.use() has no effect
because the the backend has already been chosen;
matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.
Module argparse was already imported from /home/mturk/yt-x86_64/lib/python2.7/argparse.pyc, but /home/mturk/yt-x86_64/lib/python2.7/site-packages is being added to sys.path
RUNNING TEST Test2DGasDistribution_density_x-vel_AveragedDensity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_AveragedDensity SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_Density
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_Density SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_DivV
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_DivV SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_Entropy
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_Entropy SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_Pressure
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_Pressure SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_SoundSpeed
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_SoundSpeed SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_Temperature
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_Temperature SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_particle_density
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_particle_density SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_x-velocity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_x-velocity SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_y-velocity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_y-velocity SUCCEEDED
RUNNING TEST Test2DGasDistribution_density_x-vel_z-velocity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_z-velocity SUCCEEDED
RUNNING TEST TestBooleanANDGridQuantity_BooleanANDGrid
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestBooleanANDGridQuantity_BooleanANDGrid SUCCEEDED
RUNNING TEST TestBooleanANDParticleQuantity_BooleanANDParticle
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestBooleanANDParticleQuantity_BooleanANDParticle SUCCEEDED
RUNNING TEST TestBooleanNOTGridQuantity_BooleanNOTGrid
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestBooleanNOTGridQuantity_BooleanNOTGrid SUCCEEDED
RUNNING TEST TestBooleanNOTParticleQuantity_BooleanNOTParticle
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestBooleanNOTParticleQuantity_BooleanNOTParticle SUCCEEDED
RUNNING TEST TestBooleanORGridQuantity_BooleanORGrid
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestBooleanORGridQuantity_BooleanORGrid SUCCEEDED
RUNNING TEST TestBooleanORParticleQuantity_BooleanORParticle
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestBooleanORParticleQuantity_BooleanORParticle SUCCEEDED
RUNNING TEST TestGasDistribution_density_AveragedDensity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_AveragedDensity SUCCEEDED
RUNNING TEST TestGasDistribution_density_Density
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_Density SUCCEEDED
RUNNING TEST TestGasDistribution_densiCalling hop... 1124453 8.000e+01
nSmooth = 65 kd->nActive = 1124453
ty_DivV
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_DivV SUCCEEDED
RUNNING TEST TestGasDistribution_density_Entropy
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_Entropy SUCCEEDED
RUNNING TEST TestGasDistribution_density_Pressure
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_Pressure SUCCEEDED
RUNNING TEST TestGasDistribution_density_SoundSpeed
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_SoundSpeed SUCCEEDED
RUNNING TEST TestGasDistribution_density_Temperature
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_Temperature SUCCEEDED
RUNNING TEST TestGasDistribution_density_particle_density
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_particle_density SUCCEEDED
RUNNING TEST TestGasDistribution_density_x-velocity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_x-velocity SUCCEEDED
RUNNING TEST TestGasDistribution_density_y-velocity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_y-velocity SUCCEEDED
RUNNING TEST TestGasDistribution_density_z-velocity
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestGasDistribution_density_z-velocity SUCCEEDED
RUNNING TEST TestHaloCountFOF_halo_count_FOF
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestHaloCountFOF_halo_count_FOFLink length is 0.001923
Filling in 1124453 particles
Number of initial groups:215069
Number of groups:2402
FOF CPU TIME: 33.330083 secs
SUCCEEDED
RUNNING TEST TestHaloCountHOP_halo_count_HOP
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestHaloCountHOP_halo_count_HOPCopying arrays for 1124453 particles
Building Tree...
Finding Densities...
Finding Densest Neighbors...
Grouping...
Merging Groups...
Writing Output...
All Done!Calling regroup...
No minimum group size specified. Assuming 10 particles.
ngroups = 5849
SUCCEEDED
RUNNING TEST TestHaloCountPHOP_halo_count_PHOP
4ebd338ffa51_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_TestHaloCountPHOP_halo_count_PHOP
Traceback (most recent call last):
File "tests/runall.py", line 120, in <module>
rtr.run_test(test_name)
File "/home/mturk/yt-x86_64/src/yt-hg/yt/utilities/answer_testing/runner.py", line 120, in run_test
self._run(test_instance)
File "/home/mturk/yt-x86_64/src/yt-hg/yt/utilities/answer_testing/runner.py", line 132, in _run
test.run()
File "/home/mturk/yt-x86_64/src/yt-hg/yt/utilities/answer_testing/halo_tests.py", line 52, in run
halos = parallelHF(self.pf, threshold=self.threshold, dm_only=False)
File "/home/mturk/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/halo_objects.py", line 1993, in __init__
tree = self.tree)
File "/home/mturk/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/halo_objects.py", line 1405, in __init__
HaloList.__init__(self, data_source, dm_only)
File "/home/mturk/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/halo_objects.py", line 1022, in __init__
self._run_finder()
File "/home/mturk/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/halo_objects.py", line 1433, in _run_finder
tree = self.tree)
File "/home/mturk/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/parallel_hop/parallel_hop_interface.py", line 73, in __init__
self._chain_hop()
File "/home/mturk/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/parallel_hop/parallel_hop_interface.py", line 1529, in _chain_hop
self._init_kd_tree()
File "/home/mturk/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/parallel_hop/parallel_hop_interface.py", line 351, in _init_kd_tree
fKD.dens = na.zeros(self.size, dtype='float64', order='F')
NameError: global name 'fKD' is not defined
Build step 'Execute shell' marked build as failure
Recording test results
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