[yt-svn] Build failed in Jenkins: yt - galaxy0030 #112
matthewturk at gmail.com
matthewturk at gmail.com
Tue Apr 3 12:47:00 PDT 2012
See <http://localhost:8080/job/yt%20-%20galaxy0030/112/changes>
Changes:
[Matthew Turk <matthewturk at gmail.com>] Issue a warning about CFLAGS not being empty.
[Nathan Goldbaum <goldbaum at ucolick.org>] More useful help message.
[Nathan Goldbaum <goldbaum at ucolick.org>] Reversing the interface changes from the previous commits. It was just fine the way it was.
[Nathan Goldbaum <goldbaum at ucolick.org>] nargs = '?' doens't work the way I thought it did. Might as well just mandate
that a field needs to be specified.
[Nathan Goldbaum <goldbaum at ucolick.org>] We now check against the full field list.
This was missing enzo fields for flash datasets when comparing
against only pf.h.field_list
[Nathan Goldbaum <goldbaum at ucolick.org>] This fixes the broken --max and --min keywords of 'yt stats'
[Nathan Goldbaum <goldbaum at ucolick.org>] Removing a call to pdb.
[Nathan Goldbaum <goldbaum at ucolick.org>] Indentation error.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merged in MatthewTurk/yt (pull request #135)
[Matthew Turk <matthewturk at gmail.com>] Time series now operates, by default, in parallel.
[Matthew Turk <matthewturk at gmail.com>] Merged in sskory/yt (pull request #134)
[Stephen Skory <s at skory.us>] Fixing a sign error in eps_writer.py. The colorbar was becoming
mis-aligned in the y-axis when the shrink factor was different than 1.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Matthew Turk <matthewturk at gmail.com>] Adding a .params property to the TimeSeries objects, which will return the
following attributes:
refine_by
dimensionality
current_time
domain_dimensions
domain_left_edge
domain_right_edge
unique_identifier
current_redshift
cosmological_simulation
omega_matter
omega_lambda
hubble_constant
[Nathan Goldbaum <goldbaum at ucolick.org>] Oops, left -> right.
[Nathan Goldbaum <goldbaum at ucolick.org>] Fixes parameter file parsing for FLASH2.5 and some fixes for 2D data.
[John ZuHone <jzuhone at gmail.com>] Redefining "TotalEnergy" and "ThermalEnergy" as in units of erg/g. Including a few fallbacks in case some fields are not defined.
[John ZuHone <jzuhone at gmail.com>] 1) Removing caching of facevars variable names since they are of a different shape than cell-centered variables and we wouldn't be reading them in right anyway. My bad.
2) String runtime parameters/scalars need to have their values stripped of trailing spaces before including them in the parameters dict. This was causing a problem with correctly identifying "pf.parameters['pc_unitsbase']" as "CGS"
[Matthew Turk <matthewturk at gmail.com>] Merging in the FLASH changes.
[Matthew Turk <matthewturk at gmail.com>] Fixes for the RecurseOctreeByLevels function in the case where you're bordering
on the precision limit at your highest levels.
[John ZuHone <jzuhone at gmail.com>] Merged in ngoldbaum/yt-ngoldbaum (pull request #127)
[Nathan Goldbaum <goldbaum at ucolick.org>] I'm no longer implicitly assuming Gaussian units.
[Nathan Goldbaum <goldbaum at ucolick.org>] Updating the FLASH frontend to read in runtime parameters and scalars.
Also added a thermal energy field and detection for CGS units.
[Stephen Skory <s at skory.us>] An approximately 10% speedup of the particle matching step of the halo
merger tree. It may actually be faster than that on larger-sized
simulations.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Matthew Turk <matthewturk at gmail.com>] Adding cython annotations to bin_profil1d, which should speed it up
considerably.
[Stephen Skory <s at skory.us>] Merge.
[Stephen Skory <s at skory.us>] Making the table creation SQL line auto-generated.
[Stephen Skory <s at skory.us>] Merging in recent changes.
[Stephen Skory <s at skory.us>] Modifying the merger tree to save the halo relationships at every
cycle of pairs, rather than just at the end. It also now has a check
to see just how far along its gone so work is not repeated.
[Matthew Turk <matthewturk at gmail.com>] Adding poster to the subpackages in yt/utilities/setup.py
[Kacper Kowalik <xarthisius.kk at gmail.com>] Check if any argument passed to load() is a valid file
[Matthew Turk <matthewturk at gmail.com>] Off-by-one error in data structures for enzo in grid random selection that
shows up when you have two grids, the first of which having no fields and the
second of which having all the fields.
[Matthew Turk <matthewturk at gmail.com>] Fixing an import problem.
[Matthew Turk <matthewturk at gmail.com>] Moving matplotlib/pylab imports inside subfunctions in image_handling.py.
[Matthew Turk <matthewturk at gmail.com>] Backing out 306232c75c58 (see yt-dev) which at some point should come back in a
different form.
[Matthew Turk <matthewturk at gmail.com>] Point to the datahub URL in config.py
[Matthew Turk <matthewturk at gmail.com>] Adding poster, a module by Chris AtLee licensed under the MIT license and
available from http://atlee.ca/software/poster .
[Matthew Turk <matthewturk at gmail.com>] Converting Orion fields to use NullFunc/TranslationFunc, and removing what I
believe is an unnecessary conditional in the FLASH fields.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Nathan Goldbaum <goldbaum at ucolick.org>] Fixes the command line 'yt load' in ipython 0.11/0.12
[Matthew Turk <matthewturk at gmail.com>] Adding a climp option to the HEALPixCamera.snapshot function.
[Matthew Turk <matthewturk at gmail.com>] Reverting an incorrect change from a few days ago that showed up during
regression tests. Left edge of a covering grid should be floats.
[Matthew Turk <matthewturk at gmail.com>] Minor fix to how image collections are uploaded.
[Stephen Skory <s at skory.us>] Merged in MatthewTurk/yt (pull request #125)
[Matthew Turk <matthewturk at gmail.com>] Updating install script to include IPython 0.12 and updating API compatibility
to include IPython 0.12.
[Matthew Turk <matthewturk at gmail.com>] Adding a minimal image rep and a slice minimal rep
[Stephen Skory <s at skory.us>] There is now only one mpi_bcast that auto-senses what it should do:
pickled or non-pickled.
Removed self.mine/size in favor of self.comm.rank/size.
Combined one bit of mostly repeated code into a new function.
[Stephen Skory <s at skory.us>] Modifying the merger tree such that only the root task
ever touches the SQLite database for writes AND reads.
Previously, writes were only done by the root task,
but reads were done by all. This should hopefully
A) speed things up and B) reduce memory footprint
from the fopens on the database.
[Nathan Goldbaum <goldbaum at ucolick.org>] Forgot to update these as well.
[Nathan Goldbaum <goldbaum at ucolick.org>] Dimensionality should be an int,
the bug is in the minimal representation code
[Nathan Goldbaum <goldbaum at ucolick.org>] Merging
[Nathan Goldbaum <goldbaum at ucolick.org>] Added an explicit command line option to center plots on the density maximum
[Nathan Goldbaum <goldbaum at ucolick.org>] Minimal representations expect an integer dimensionality, as in enzo
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding xcode boilerplate
[Nathan Goldbaum <goldbaum at ucolick.org>] Going back to the original install script
[Nathan Goldbaum <goldbaum at ucolick.org>] Merging
[Nathan Goldbaum <goldbaum at ucolick.org>] Merging
[Nathan Goldbaum <goldbaum at ucolick.org>] Added some boilerplate to the install script about xcode.
[Matthew Turk <matthewturk at gmail.com>] Adding velocity vectors to Reason plotwindow widget. Closes #361.
[Matthew Turk <matthewturk at gmail.com>] Killing sleeps for now
[Matthew Turk <matthewturk at gmail.com>] Adding a context manager for parallel profiling, inserting an error in the case
of a block_ratio != 1, which is not currently supported.
[Matthew Turk <matthewturk at gmail.com>] Merging, including all the halo functions
[Matthew Turk <matthewturk at gmail.com>] A few more debugging changes, and removing socket-connection code from yt and leaving it up to Rockstar
[Matthew Turk <matthewturk at gmail.com>] Fix block ratio to *actually* work in any circumstance, ever. Before it was
completely broken. Fix a couple units issues.
[Matthew Turk <matthewturk at gmail.com>] Adding a "block_ratio" argument to the rockstar interface, to subdivide a given
reader even further. Additionally, no more spatial decomposition: instead, now
do everything non-spatially, and assume it will be properly distributed in rock
star itself.
[Matthew Turk <matthewturk at gmail.com>] Adding rockstar into a setup.py system
[Matthew Turk <matthewturk at gmail.com>] Initial import of old rockstar interface
[Matthew Turk <matthewturk at gmail.com>] Merging in MIP functionality for QuadProj
[Matthew Turk <matthewturk at gmail.com>] Adding tolerance for edges in isocontour extraction. Adding style keyword to
projections to do maximum intensity projections.
[Matthew Turk <matthewturk at gmail.com>] Merged in jzuhone/yt (pull request #117)
[John ZuHone <jzuhone at gmail.com>] Bug fix: "==" instead of "="
[John ZuHone <jzuhone at gmail.com>] 1) Edited a line to reduce its length.
2) Added a check to the value of the runtime parameter/scalar to strip it if it is string.
[John ZuHone <jzuhone at gmail.com>] This fix ensures we get the "name" and "value" of the runtime parameters/scalars pair correctly by not assuming that theyxsxc occur in a specific order.
[Nathan Goldbaum <goldbaum at ucolick.org>] Backing out a change that accidentally made it into a PR.
[Nathan Goldbaum <goldbaum at ucolick.org>] Added a check for a universal orion parameter.
[John ZuHone <jzuhone at gmail.com>] Changes to the way that yt writes FITS files.
1) FixedResolutionBuffer.export_fits:
a) Write more than one field from the frb to a single file instead of
multiple files.
b) Optionally gzip the file.
c) Write header keywords for the coordinate system and for the field names
and simulation time. Accepts an optional dict for other keywords.
2) A "write_fits" function for writing floating-point arrays on the fly,
similar to "write_image" for PNGs. Can take a dictionary for writing the
coordinate system to the file. Also can be optionally gzipped.
3) For volume rendering, export a single FITS file with the r,g,b,a images
rather than 4.
[John ZuHone <jzuhone at gmail.com>] Need to get write_fits into api
[John ZuHone <jzuhone at gmail.com>] More enhancements regarding writing FITS files in yt.
1) Cleaned up the "export_fits" method of FixedResolutionBuffer from
my last commit. The new enhancements allow the user to write multiple fields
to one file, add a coordinate system to the file, and add other keywords.
Files may also be optionally gzipped.
2) Added a "write_fits" function with similar functionality as "write_image",
except that it writes a floating-point array to a FITS image.
3) Improved the export of rgba FITS images by writing all image blocks
to one file.
[John ZuHone <jzuhone at gmail.com>] Some refinements to writing FITS files from fixed resolution buffers.
1) Allows multiple fields to be written to the same file.
2) Allows file to be optionally GZIP'ed.
3) Updates header with physical coordinates and other keywords.
Still need to see if other keywords need to be added.
[Matthew Turk <matthewturk at gmail.com>] Re-enabling storage of _std fields.
[Matthew Turk <matthewturk at gmail.com>] Ported over 2D and 3D profiling routines to Cython. Removed them from the old
.c file.
[Britton Smith <brittonsmith at gmail.com>] Removed some commented out lines.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Fixing single-pass variance calculation for running in parallel.
[Britton Smith <brittonsmith at gmail.com>] Fixing bug in single pass variance calculation.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] First pass at adding variance to 1D profiles.
[Matthew Turk <matthewturk at gmail.com>] Merged in jwise77/yt (pull request #112)
[John Wise <jwise at physics.gatech.edu>] Contours are oriented in the same way as the image plots.
[John Wise <jwise at physics.gatech.edu>] Two changes. First, you can scale the image size in the EPS. The
second batch of changes slightly alter the colorbar placement.
[Matthew Turk <matthewturk at gmail.com>] Merged in sskory/yt (pull request #111)
[Stephen Skory <s at skory.us>] Reducing the number of duplicated Halo functions.
[J.S. Oishi <jsoishi at gmail.com>] Merged in atmyers/yt (pull request #113)
[Andrew Myers <atmyers at berkeley.edu>] one more fix to the chombo reader, for datasets where the max level is not present in the data dump
[Andrew Myers <atmyers at berkeley.edu>] merging
[Andrew Myers <atmyers at berkeley.edu>] merging
[Andrew Cunningham <ajcunn at gmail.com>] a fix for non-constant refinment ratios
[Andrew Cunningham <ajcunn at gmail.com>] Fixes so that gamma gets parsed out of orion2.ini and left/right edge parsing
works both with older and newer versions of h5py.
[Andrew Cunningham <ajcunn at gmail.com>] Resolved some issues that appeared with the most recent version of h5py that I had to fix to compile on kraken.
[Andrew Myers <atmyers at berkeley.edu>] previous checkin contained a bug that only showed itself on multilevel datasets. Thanks to Andy Cunningham.
[Andrew Myers <atmyers at berkeley.edu>] fixing the a grid offset problem in the Chombo reader. Also adding a redundant 'Density' field, since PlotCollection tries to use this if you don't pass in a center as an argument.
[Andrew Myers <atmyers at berkeley.edu>] a fix to the Ramses reader by Andy Cunningham. Need for the code to work on his machine.
[Andrew Myers <atmyers at berkeley.edu>] a fix from Andy, so that the Chombo reader does not assume that the domain starts at [0, 0, 0]
[Andrew Myers <atmyers at berkeley.edu>] read in radiation-energy-density
[Sam Skillman <sam.skillman at gmail.com>] In some situations the -1 in here was causing the AMRKDTree to break. i.e. for one simulation with exactly 8 processors. This also seems to balance the kdtree a bit better, so that's also a plus.
[Matthew Turk <matthewturk at gmail.com>] [install script] Adding make clean to zlib, libpng, freetype, hdf5, sqlite and
python. Closes #373.
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yt/utilities/amr_utils.c:50964:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_82read_art_tree’:
yt/utilities/amr_utils.c:50130:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50140:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50150:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50160:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50170:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50269:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50302:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50418:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50427:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50437:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50466:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50508:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:50554:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_80count_art_octs’:
yt/utilities/amr_utils.c:49606:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:49615:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:49648:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:49657:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:49705:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_78read_tiger_section’:
yt/utilities/amr_utils.c:49381:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_76read_and_seek’:
yt/utilities/amr_utils.c:48994:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:49012:8: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_f_2yt_9utilities_9amr_utils_15PartitionedGrid_integrate_ray’:
yt/utilities/amr_utils.c:25037:27: warning: ‘__pyx_v_exit_t’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_tp_new_2yt_9utilities_9amr_utils_OctreeGrid’:
yt/utilities/amr_utils.c:69353:6: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_tp_new_2yt_9utilities_9amr_utils_VectorPlane’:
yt/utilities/amr_utils.c:70117:6: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_tp_new_2yt_9utilities_9amr_utils_PartitionedGrid’:
yt/utilities/amr_utils.c:70689:6: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_tp_new_2yt_9utilities_9amr_utils_ProtoPrism’:
yt/utilities/amr_utils.c:71172:6: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pw_2yt_9utilities_9amr_utils_17AdaptiveRaySource_1__cinit__’:
yt/utilities/amr_utils.c:38705:7: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_tp_new_2yt_9utilities_9amr_utils_QuadTree’:
yt/utilities/amr_utils.c:71871:6: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_tp_new_2yt_9utilities_9amr_utils_Octree’:
yt/utilities/amr_utils.c:72061:6: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_16find_grids_in_inclined_box.isra.222’:
yt/utilities/amr_utils.c:10389:77: warning: ‘*((void *)&__pyx_v_a_vec+72)’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c:10631:28: note: ‘*((void *)&__pyx_v_a_vec+72)’ was declared here
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_18calculate_fill_grids.isra.221’:
yt/utilities/amr_utils.c:11742:30: warning: ‘__pyx_v_total’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_112kdtree_get_choices.isra.173’:
yt/utilities/amr_utils.c:66938:21: warning: ‘__pyx_v_my_split’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c:66470:7: warning: ‘__pyx_v_best_dim’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pw_2yt_9utilities_9amr_utils_17AdaptiveRaySource_7integrate_brick’:
yt/utilities/amr_utils.c:41171:17: warning: ‘__pyx_v_dt’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c:41079:28: note: ‘__pyx_v_dt’ was declared here
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/amr_utils.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/union_find.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_pix2xy.o -L/home/mturk/yt-x86_64/lib -L/home/mturk/yt-x86_64/lib -L. -lm -lpng -lfreetype -lpython2.7 -o yt/utilities/amr_utils.so
running scons
+ cd yt/utilities/kdtree
+ make
Using Forthon ()
Forthon -F gfortran --compile_first fKD_source --no2underscores --with-numpy --fopt "-O3" fKD fKD_source.f90
make[1]: Entering directory `<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
make[1]: Nothing to be done for `dynamic'.
make[1]: Leaving directory `<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
IN FORTHON_BUILDER
running build
running build_ext
building 'fKDpy' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/fKDpymodule.c -o build/temp.linux-x86_64-2.7/fKDpymodule.o
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h:116:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:117:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:118:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:119:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:129:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:130:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:131:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:132:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:151:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:152:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:157:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:158:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h: In function ‘ForthonPackage_delvarattr’:
build/temp.linux-x86_64-2.7/Forthon.h:1701:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
build/temp.linux-x86_64-2.7/Forthon.h:1726:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_create_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:126:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_add_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:157:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_free_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:188:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_find_many_r_nearest’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:245:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘tree_nodedeclarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:678:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘kdtree2declarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:865:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:881:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:897:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘tree_setdeclarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:1176:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1192:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1208:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1224:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1240:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1256:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1272:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1288:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1304:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1320:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1336:29: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: At top level:
build/temp.linux-x86_64-2.7/Forthon.h:194:15: warning: ‘cputime’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:574:18: warning: ‘Forthon_getscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:580:18: warning: ‘Forthon_getarraydict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:910:12: warning: ‘Forthon_setscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:916:12: warning: ‘Forthon_setarraydict’ defined but not used [-Wunused-function]
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/Forthon.c -o build/temp.linux-x86_64-2.7/Forthon.o
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/fKDpymodule.o build/temp.linux-x86_64-2.7/Forthon.o build/temp.linux-x86_64-2.7/fKD.o build/temp.linux-x86_64-2.7/fKD_p.o build/temp.linux-x86_64-2.7/fKD_source.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/home/mturk/yt-x86_64/lib -lgfortran -lpython2.7 -o ./fKDpy.so
+ cd ../../..
[workspace] $ /bin/sh -xe /tmp/hudson5583835648327393928.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold -f /home/mturk/Research/data/JHK-DD0030/galaxy0030
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Initializing TestRegistry
Initializing test_registry
This call to matplotlib.use() has no effect
because the the backend has already been chosen;
matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.
Module argparse was already imported from /home/mturk/yt-x86_64/lib/python2.7/argparse.pyc, but /home/mturk/yt-x86_64/lib/python2.7/site-packages is being added to sys.path
RUNNING TEST Test2DGasDistribution_density_x-vel_AveragedDensity
2af699ff04a4_galaxy0030_68951d2383b906f87e2df88c689176ea Running galaxy0030_Test2DGasDistribution_density_x-vel_AveragedDensity
Traceback (most recent call last):
File "tests/runall.py", line 123, in <module>
rtr.run_test(test_name)
File "<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/answer_testing/runner.py",> line 120, in run_test
self._run(test_instance)
File "<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/answer_testing/runner.py",> line 136, in _run
success, msg = self._compare(test)
File "<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/answer_testing/runner.py",> line 157, in _compare
test.compare(old_result)
File "<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/answer_testing/hydro_tests.py",> line 178, in compare
self.result, old_result)
File "<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/answer_testing/output_tests.py",> line 212, in compare_data_arrays
self.compare_array_delta(d1[field], d2[field], tol)
KeyError: 'AveragedDensity_std'
Build step 'Execute shell' marked build as failure
Recording test results
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