[Yt-svn] Build failed in Jenkins: yt - small data #94
matthewturk at gmail.com
matthewturk at gmail.com
Thu Oct 20 07:03:04 PDT 2011
See <http://localhost:8080/job/yt%20-%20small%20data/94/changes>
Changes:
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Sam Skillman <sam.skillman at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] adding the communicator onto the workgroup.
[Matthew Turk <matthewturk at gmail.com>] Now if you supply a "storage" argument to parallel_objects (should be a dict!)
it will include a storage object in which you can set a result and then get a
collated result. For instance:
storage = {}
for sto, obj in parallel_objects(range(10), njobs=2, storage=storage):
sto.result = obj**2.0
for i, j in sorted(storage.items()): i, j
[Sam Skillman <sam.skillman at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] Initial pass at workgroups is working.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Made EnzoSimulation a subclass of TimeSeriesData.
[Matthew Turk <matthewturk at gmail.com>] Removing some barriers
[Sam Skillman <sam.skillman at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] Adding a ProcessorPool that can create workgroups.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Removed some unnecessary deletes.
[Matthew Turk <matthewturk at gmail.com>] Removing a spurious print statement
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Moved mpi_maxdict_dict from parallel_analysis_interface to
parallel_hop_interface and renamed with a more descriptive function name,
linearize_chain_dict. Removed the implementation of concatenating the arrays
and called par_combine_object for each array.
[Britton Smith <brittonsmith at gmail.com>] Moved mpi_maxdict_dict to be a function within parallel hop.
[Matthew Turk <matthewturk at gmail.com>] Make the ytcfg vals into strings
[Matthew Turk <matthewturk at gmail.com>] Merging
[Matthew Turk <matthewturk at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] A fix for when run in serial.
[Matthew Turk <matthewturk at gmail.com>] Setting the topcomm values. Also raise NotImplemented for a push() op.
[Matthew Turk <matthewturk at gmail.com>] A couple changes necessary to get the parallel_objects routine to work, which
it now seems to do.
[Sam Skillman <sam.skillman at gmail.com>] More fixes in moving to subcommunicators.
[Sam Skillman <sam.skillman at gmail.com>] Merging.
[Sam Skillman <sam.skillman at gmail.com>] Moving get_dependencies to PAI.
[Matthew Turk <matthewturk at gmail.com>] Merging.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Fixed get_filename.
[Britton Smith <brittonsmith at gmail.com>] Fixed is_mine.
[Britton Smith <brittonsmith at gmail.com>] Fixed a few more communicator functions.
[Britton Smith <brittonsmith at gmail.com>] Fixed one more send_array.
[Britton Smith <brittonsmith at gmail.com>] Fixed send_array.
[Britton Smith <brittonsmith at gmail.com>] Fixed recv_array.
[Britton Smith <brittonsmith at gmail.com>] Changed alltoallv_array.
[Matthew Turk <matthewturk at gmail.com>] Replacing __parallel_rank and __parallel_size with the appropriate
__[global|topcomm]__parallel_[rank|size] config options.
[Sam Skillman <sam.skillman at gmail.com>] getting rid of explict calls to what the parallel setup is.
[Sam Skillman <sam.skillman at gmail.com>] Up to write_on_root.
[Sam Skillman <sam.skillman at gmail.com>] Up to mpi_info_dict
[Sam Skillman <sam.skillman at gmail.com>] Up to _mpi_allreduce
[Sam Skillman <sam.skillman at gmail.com>] put the fixes in PAI as well.
[Sam Skillman <sam.skillman at gmail.com>] More ._mpithing -> .comm.mpithing
[Sam Skillman <sam.skillman at gmail.com>] hg push moving calls to self.comm.
[Matthew Turk <matthewturk at gmail.com>] Fixing _par_rank and _par_size in one more place
[Matthew Turk <matthewturk at gmail.com>] self._par_rank => self.comm.rank
self._par_size => self.comm.size
[Sam Skillman <sam.skillman at gmail.com>] Moving stuff around so that things can be instantiated.
[Sam Skillman <sam.skillman at gmail.com>] capable, not enabled.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Added parallel_objects function.
[Sam Skillman <sam.skillman at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] More work to moving to subcommunicators, moving _send_array and other mpi operations that were just free standing to within the Communicator object.
[Matthew Turk <matthewturk at gmail.com>] Adding a communication_system object
[Sam Skillman <sam.skillman at gmail.com>] Merging.
[Sam Skillman <sam.skillman at gmail.com>] Adding intermediate point in moving to subcommunicators.
[Matthew Turk <matthewturk at gmail.com>] Adding in ParallelAnalysisInterface.__init__ calls. Shouldn't we be using
super() by now?
[Matthew Turk <matthewturk at gmail.com>] Fixing a problem with my oft-repeated typo of combine_object / object_combine.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] Fixing a few .data -> .field_data issues.
[Britton Smith <brittonsmith at gmail.com>] Fixed tests again.
[Britton Smith <brittonsmith at gmail.com>] Fixing some overzealousness of .field_data change.
[Matthew Turk <matthewturk at gmail.com>] Removing "traited explorer"
[Matthew Turk <matthewturk at gmail.com>] Fixing PHOP in serial.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Britton Smith <brittonsmith at gmail.com>] Fixed a test for .field_data.
[Matthew Turk <matthewturk at gmail.com>] Misplaced parenthesis
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Fixed a few issues with moving .data to .field_data.
[Britton Smith <brittonsmith at gmail.com>] Changed .data to .field_data YTFieldData instances.
[Britton Smith <brittonsmith at gmail.com>] Changed .data to .field_data and made them instances of YTFieldData.
[Britton Smith <brittonsmith at gmail.com>] Changing ._data to .field_data in tests.
[Britton Smith <brittonsmith at gmail.com>] Changed all ._data to .field_data and ther are now defined as
instances of YTFieldData.
[Matthew Turk <matthewturk at gmail.com>] Fixed PHOP
[Matthew Turk <matthewturk at gmail.com>] A couple fixes, but still breaking in PHOP.
[Matthew Turk <matthewturk at gmail.com>] Fixing typo
[Matthew Turk <matthewturk at gmail.com>] Removing unused stuff, coalescing almost all of the mpi_[op][type] usages.
Just catarray left.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Cameron Hummels <chummels at astro.columbia.edu>] Merging.
[Cameron Hummels <chummels at astro.columbia.edu>] Modified halo finder tests to only compare number of halos detected in various modes of halo finding. It seems that comparing the contents of the halo does not behave reproducibly in parallel with different numbers of nodes.
[Matthew Turk <matthewturk at gmail.com>] This return statement should fix the issues.
[Matthew Turk <matthewturk at gmail.com>] Attempting to make datatypes and whatnot more specific.
[Matthew Turk <matthewturk at gmail.com>] Merge
[Sam Skillman <sam.skillman at gmail.com>] Removing commented lines.
[Sam Skillman <sam.skillman at gmail.com>] Removing all data and type specific reductions in preference for a catch-all _mpi_allreduce
[Matthew Turk <matthewturk at gmail.com>] Coalescing parallel routines into par_combine_object
[Sam Skillman <sam.skillman at gmail.com>] Intermediate step to remove various mpi reduction operations. Functionality is currently preserved, and we will now remove all _mpi_all[operation].
[Matthew Turk <matthewturk at gmail.com>] Removing mpi_maxdict
[Matthew Turk <matthewturk at gmail.com>] Merging
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Replaced _mpi_get_size() with _par_size property and
_mpi_get_rank() with _par_rank property.
[Matthew Turk <matthewturk at gmail.com>] Removing mpi_catrgb.
[Matthew Turk <matthewturk at gmail.com>] Removing parallel option from argparse, mandating usage of python2.7-mpi for
instance.
[Matthew Turk <matthewturk at gmail.com>] Merge
[Sam Skillman <sam.skillman at gmail.com>] Merging.
[Sam Skillman <sam.skillman at gmail.com>] Getting rid of a few more Allsum's.
[Matthew Turk <matthewturk at gmail.com>] More unused function removal.
[Matthew Turk <matthewturk at gmail.com>] Removing an unused function and the software_sampler file.
[Matthew Turk <matthewturk at gmail.com>] Removing mpi_find_neighbor_3d
[Britton Smith <brittonsmith at gmail.com>] Removing Isend_long and Isend_double.
[Sam Skillman <sam.skillman at gmail.com>] Merging.
[Sam Skillman <sam.skillman at gmail.com>] Removing Allsum_double and Allsum_long in favor of general allsum function.
[Matthew Turk <matthewturk at gmail.com>] Merging.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Replaced mpi_Isend_long and mpi_Isend_double with mpi_nonblocking_send.
[Sam Skillman <sam.skillman at gmail.com>] Adding a catch-all allsum, am about to go through removing old functions and preserving functionality.
[Matthew Turk <matthewturk at gmail.com>] Removing unused functions and commented code.
[Britton Smith <brittonsmith at gmail.com>] Replaced more Irecv calls.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Replaced with mpi_Irecv_double and mpi_Irecv_long and mpi_nonblocking_recv.
[Matthew Turk <matthewturk at gmail.com>] Re-adding mpi_minimum_array_long for now
[Matthew Turk <matthewturk at gmail.com>] Adding a get_mpi_type function
[Matthew Turk <matthewturk at gmail.com>] Adding dtype_names dictionary to translate dtypes to MPI types.
[Matthew Turk <matthewturk at gmail.com>] Consolidating "_mpi_concatenate_array_*" operations into the _mpi_catarray
function.
[Matthew Turk <matthewturk at gmail.com>] First pass at an expanded "yt analyze" command.
[Matthew Turk <matthewturk at gmail.com>] Adding speedup for grouping fields and adding multiple at the same time in halo
profiler.
[Britton Smith <brittonsmith at gmail.com>] Fixed test ray to seed random number generator.
[Matthew Turk <matthewturk at gmail.com>] Fixing problems with DQ comparisons
[Britton Smith <brittonsmith at gmail.com>] Fixed a typo.
[Matthew Turk <matthewturk at gmail.com>] Disable plotting and fixed up the listing of tests.
[Cameron Hummels <chummels at astro.columbia.edu>] Merging.
[Cameron Hummels <chummels at astro.columbia.edu>] Removing out excess matplotlib.use('Agg') commands, to avoid annoying warning messages.
[Cameron Hummels <chummels at astro.columbia.edu>] Forgot to add halos.py file for initializing yt tests. Added now.
[Britton Smith <brittonsmith at gmail.com>] Fixed bug in TestRay.
[Matthew Turk <matthewturk at gmail.com>] Fixing error with loading tests and checking for existence of those tests.
[Cameron Hummels <chummels at astro.columbia.edu>] Merging.
[Cameron Hummels <chummels at astro.columbia.edu>] Added in calls in yt's test_runner to include different Halo Finder comparisons in test.
[Cameron Hummels <chummels at astro.columbia.edu>] Added halo composition hash tests to make strict identicality tests between the outputs from all three different methods for halo finding.
[Cameron Hummels <chummels at astro.columbia.edu>] Added halo profile tests for FOF and Parallel Hop; Renamed default profile test to include HOP explicitly in classname of test.
[Matthew Turk <matthewturk at gmail.com>] Use set() to speed up membership check
[Matthew Turk <matthewturk at gmail.com>] A better solution for missing tests.
[Matthew Turk <matthewturk at gmail.com>] Commenting this out preserves the existence of default tests in the registry.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Added Ray tests and changed test file output names.
[Sam Skillman <sam.skillman at gmail.com>] Merging.
[Sam Skillman <sam.skillman at gmail.com>] Adding disk to data object testing.
[Matthew Turk <matthewturk at gmail.com>] Fixing an issue with ghost zones and cut regions
[Matthew Turk <matthewturk at gmail.com>] Fixing errors with cut region tests and particle fields
[Matthew Turk <matthewturk at gmail.com>] For now, drop down to only cutting regions on Density.
[Matthew Turk <matthewturk at gmail.com>] Merge
[Britton Smith <brittonsmith at gmail.com>] Fixed a typo in slice test.
[Matthew Turk <matthewturk at gmail.com>] Adding cut_regions and changing 'self' to 'tobj'
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Added slice tests.
[Matthew Turk <matthewturk at gmail.com>] Merging down
[Matthew Turk <matthewturk at gmail.com>] Merging down
[J.S. Oishi <jsoishi at gmail.com>] merged.
[J.S. Oishi <jsoishi at gmail.com>] added 2D gas distribution test.
[Matthew Turk <matthewturk at gmail.com>] Adding more derived quantity tests
[Sam Skillman <sam.skillman at gmail.com>] Merging.
[Sam Skillman <sam.skillman at gmail.com>] Adding Volume Rendering test.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Added off-axis projection test.
[Britton Smith <brittonsmith at gmail.com>] Fixed proton charge constant.
[Matthew Turk <matthewturk at gmail.com>] Adding a bunch of derived quantity tests
[Matthew Turk <matthewturk at gmail.com>] Tests now run in parallel. This does not, however, mean we should just test
gigantic datasets: there's still a lot of "all_data()" and whatnot.
[Matthew Turk <matthewturk at gmail.com>] Merged in sskory/yt (pull request #9)
[Stephen Skory <s at skory.us>] Merging from mainline.
[Stephen Skory <s at skory.us>] Adding some modifications that should dramatically lower the memory
usage for parallelHF. Thanks to Matt!
[Stephen Skory <s at skory.us>] Adding the ability to supply a total_mass and number of particles
(the latter is only for parallelHF) to HOP in order to shorten
the process, or reduce peak memory usage.
------------------------------------------
[...truncated 277 lines...]
building 'yt.utilities.hdf5_light_reader' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-DH5_USE_16_API=True -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/hdf5_light_reader.c
yt/utilities/hdf5_light_reader.c: In function ‘Py_ReadListOfDatasets’:
yt/utilities/hdf5_light_reader.c:550:7: warning: ‘nodelist’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.o -L/home/mturk/yt-x86_64/lib -L. -lm -lhdf5 -lpython2.7 -o yt/utilities/hdf5_light_reader.so
building 'yt.utilities.amr_utils' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils
compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -Iyt/utilities/_amr_utils/ -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include/freetype2 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_amr_utils/healpix_pix2vec_nest.c
gcc: yt/utilities/_amr_utils/healpix_vec2pix_nest.c
yt/utilities/_amr_utils/healpix_vec2pix_nest.c: In function ‘vec2pix_nest’:
yt/utilities/_amr_utils/healpix_vec2pix_nest.c:56:30: warning: unused variable ‘pi’
gcc: yt/utilities/_amr_utils/healpix_mk_xy2pix.c
gcc: yt/utilities/_amr_utils/union_find.c
gcc: yt/utilities/_amr_utils/healpix_mk_pix2xy.c
gcc: yt/utilities/_amr_utils/FixedInterpolator.c
yt/utilities/_amr_utils/FixedInterpolator.c: In function ‘offset_interpolate’:
yt/utilities/_amr_utils/FixedInterpolator.c:54:9: warning: unused variable ‘i’
yt/utilities/_amr_utils/FixedInterpolator.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: ‘_import_array’ defined but not used
gcc: yt/utilities/_amr_utils/kdtree.c
In file included from /home/mturk/yt-x86_64/include/python2.7/Python.h:8:0,
from yt/utilities/_amr_utils/kdtree.h:29,
from yt/utilities/_amr_utils/kdtree.c:32:
/home/mturk/yt-x86_64/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:214:0: note: this is the location of the previous definition
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: ‘_import_array’ defined but not used
gcc: yt/utilities/_amr_utils/healpix_pix2ang_nest.c
gcc: yt/utilities/_amr_utils/healpix_ang2pix_nest.c
gcc: yt/utilities/amr_utils.c
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_15PartitionedGrid_4get_isocontour_triangles’:
yt/utilities/amr_utils.c:22511:9: warning: implicit declaration of function ‘offset_fill’
yt/utilities/amr_utils.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: ‘_import_array’ defined but not used
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: ‘_import_umath’ defined but not used
yt/utilities/amr_utils.c:14338:13: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_CountTriangles’ defined but not used
yt/utilities/amr_utils.c:43939:14: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_read_art_vars’ defined but not used
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_39read_castro_particles’:
yt/utilities/amr_utils.c:45130:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_37read_art_root_vars’:
yt/utilities/amr_utils.c:43861:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_36read_art_tree’:
yt/utilities/amr_utils.c:43094:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43104:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43114:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43124:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43134:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43242:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43261:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43377:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43386:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43415:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43444:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43508:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43518:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:43529:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_35count_art_octs’:
yt/utilities/amr_utils.c:42568:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:42577:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:42610:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:42619:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:42667:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_34read_tiger_section’:
yt/utilities/amr_utils.c:42361:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_f_2yt_9utilities_9amr_utils_15PartitionedGrid_integrate_ray’:
yt/utilities/amr_utils.c:19935:28: warning: ‘__pyx_v_exit_t’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_47kdtree_get_choices’:
yt/utilities/amr_utils.c:56215:7: warning: ‘__pyx_v_best_dim’ may be used uninitialized in this function
yt/utilities/amr_utils.c:56217:7: warning: ‘__pyx_v_my_split’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_1RecurseOctreeByLevels’:
yt/utilities/amr_utils.c:4353:26: warning: ‘__pyx_v_k’ may be used uninitialized in this function
yt/utilities/amr_utils.c:4372:28: warning: ‘__pyx_v_cz’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/amr_utils.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/union_find.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_pix2xy.o -L/home/mturk/yt-x86_64/lib -L/home/mturk/yt-x86_64/lib -L. -lm -lpng -lfreetype -lpython2.7 -o yt/utilities/amr_utils.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_libconfig/grammar.c
grammar.y:50:1: warning: function declaration isn’t a prototype
grammar.y:51:1: warning: function declaration isn’t a prototype
gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_override’:
yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!"
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_restore’:
yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!"
gcc: yt/utilities/_libconfig/strbuf.c
gcc: yt/utilities/_libconfig/scanner.c
gcc: yt/utilities/_libconfig/scanctx.c
gcc: yt/utilities/libconfig_wrapper.c
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_2read_file’:
yt/utilities/libconfig_wrapper.c:727:24: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c:736:24: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_5get_setting’:
yt/utilities/libconfig_wrapper.c:1221:23: warning: assignment discards qualifiers from pointer target type
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o -L. -lpython2.7 -o yt/utilities/libconfig_wrapper.so
building 'yt.visualization._MPL' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/visualization
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/visualization/_MPL.c
yt/visualization/_MPL.c: In function ‘Py_Pixelize’:
yt/visualization/_MPL.c:121:7: warning: unused variable ‘ndy’
yt/visualization/_MPL.c:120:7: warning: unused variable ‘ndx’
yt/visualization/_MPL.c:119:7: warning: unused variable ‘ny’
yt/visualization/_MPL.c: In function ‘Py_CPixelize’:
yt/visualization/_MPL.c:350:15: warning: unused variable ‘radius’
yt/visualization/_MPL.c:335:60: warning: unused variable ‘dsp’
yt/visualization/_MPL.c:335:54: warning: unused variable ‘dzsp’
yt/visualization/_MPL.c:335:48: warning: unused variable ‘dysp’
yt/visualization/_MPL.c:335:42: warning: unused variable ‘dxsp’
yt/visualization/_MPL.c:335:36: warning: unused variable ‘pysp’
yt/visualization/_MPL.c:335:30: warning: unused variable ‘pxsp’
yt/visualization/_MPL.c:335:25: warning: unused variable ‘zsp’
yt/visualization/_MPL.c:335:20: warning: unused variable ‘ysp’
yt/visualization/_MPL.c:335:15: warning: unused variable ‘xsp’
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -L. -lm -lpython2.7 -o yt/visualization/_MPL.so
running scons
[workspace] $ /bin/sh -xe /tmp/hudson5032533641784621309.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold
Parsing Hierarchy 0% | | ETA: --:--:--
Parsing Hierarchy 10% |/// | ETA: 00:00:00
Parsing Hierarchy 20% |------- | ETA: 00:00:00
Parsing Hierarchy 30% |\\\\\\\\\\\ | ETA: 00:00:00
Parsing Hierarchy 40% |||||||||||||||| | ETA: 00:00:00
Parsing Hierarchy 50% |/////////////////// | ETA: 00:00:00
Parsing Hierarchy 60% |----------------------- | ETA: 00:00:00
Parsing Hierarchy 70% |\\\\\\\\\\\\\\\\\\\\\\\\\\\ | ETA: 00:00:00
Parsing Hierarchy 80% |||||||||||||||||||||||||||||||| | ETA: 00:00:00
Parsing Hierarchy 90% |/////////////////////////////////// | ETA: 00:00:00
Parsing Hierarchy100% ||||||||||||||||||||||||||||||||||||||||| Time: 00:00:00
Warning: divide by zero encountered in divide
Warning: divide by zero encountered in divide
Warning: invalid value encountered in sqrt
Warning: divide by zero encountered in divide
Warning: divide by zero encountered in divide
Warning: invalid value encountered in sqrt
Warning: divide by zero encountered in divide
Initializing TestRegistry
Initializing test_registry
This call to matplotlib.use() has no effect
because the the backend has already been chosen;
matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.
RUNNING TEST Test2DGasDistribution_density_x-vel_AveragedDensity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_AveragedDensity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_AveragedDensity, <traceback object at 0x3f44488>)
RUNNING TEST Test2DGasDistribution_density_x-vel_Density
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_Density FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_Density, <traceback object at 0x41a0b90>)
RUNNING TEST Test2DGasDistribution_density_x-vel_DivV
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_DivV FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_DivV, <traceback object at 0x4199680>)
RUNNING TEST Test2DGasDistribution_density_x-vel_Entropy
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_Entropy FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_Entropy, <traceback object at 0x43af128>)
RUNNING TEST Test2DGasDistribution_density_x-vel_Pressure
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_Pressure FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_Pressure, <traceback object at 0x481fb00>)
RUNNING TEST Test2DGasDistribution_density_x-vel_SoundSpeed
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_SoundSpeed FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_SoundSpeed, <traceback object at 0x484f5a8>)
RUNNING TEST Test2DGasDistribution_density_x-vel_Temperature
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_Temperature FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_Temperature, <traceback object at 0x3bca248>)
RUNNING TEST Test2DGasDistribution_density_x-vel_particle_density
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_particle_density FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_particle_density, <traceback object at 0x4398fc8>)
RUNNING TEST Test2DGasDistribution_density_x-vel_x-velocity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_x-velocity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_x-velocity, <traceback object at 0x39636c8>)
RUNNING TEST Test2DGasDistribution_density_x-vel_y-velocity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_y-velocity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_y-velocity, <traceback object at 0x3b70e60>)
RUNNING TEST Test2DGasDistribution_density_x-vel_z-velocity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_Test2DGasDistribution_density_x-vel_z-velocity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_Test2DGasDistribution_density_x-vel_z-velocity, <traceback object at 0x3ae63f8>)
RUNNING TEST TestGasDistribution_density_AveragedDensity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_AveragedDensity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_AveragedDensity, <traceback object at 0x481eb90>)
RUNNING TEST TestGasDistribution_density_Density
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_Density FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_Density, <traceback object at 0x395b8c0>)
RUNNING TEST TestGasDistribution_density_DivV
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_DivV FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_DivV, <traceback object at 0x4a9afc8>)
RUNNING TEST TestGasDistribution_density_Entropy
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_Entropy FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_Entropy, <traceback object at 0x39944d0>)
RUNNING TEST TestGasDistribution_density_Pressure
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_Pressure FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_Pressure, <traceback object at 0x4842368>)
RUNNING TEST TestGasDistribution_density_SoundSpeed
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_SoundSpeed FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_SoundSpeed, <traceback object at 0x4849d40>)
RUNNING TEST TestGasDistribution_density_Temperature
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_densityCalling hop... 9233 8.000e+01
nSmooth = 65 kd->nActive = 9233
_Temperature FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_Temperature, <traceback object at 0x4836cf8>)
RUNNING TEST TestGasDistribution_density_particle_density
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_particle_density FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_particle_density, <traceback object at 0x4a98fc8>)
RUNNING TEST TestGasDistribution_density_x-velocity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_x-velocity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_x-velocity, <traceback object at 0x3970b48>)
RUNNING TEST TestGasDistribution_density_y-velocity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_y-velocity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_y-velocity, <traceback object at 0x3b548c0>)
RUNNING TEST TestGasDistribution_density_z-velocity
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_density_z-velocity FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestGasDistribution_density_z-velocity, <traceback object at 0x4842518>)
RUNNING TEST TestHaloCountFOF_halo_count_FOF
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestHaloCountFOF_halo_count_FOFLink length is 0.009533
Filling in 9233 particles
Number of initial groups:7642
Number of groups:6
FOF CPU TIME: 0.000000 secs
FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestHaloCountFOF_halo_count_FOF, <traceback object at 0x4846200>)
RUNNING TEST TestHaloCountHOP_halo_count_HOP
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestHaloCountHOP_halo_count_HOPCopying arrays for 9233 particles
Building Tree...
Finding Densities...
Finding Densest Neighbors...
Grouping...
Merging Groups...
Writing Output...
All Done!Calling regroup...
No minimum group size specified. Assuming 10 particles.
ngroups = 33
FAILED (<class 'yt.utilities.answer_testing.runner.FileNotExistException'>, FileNotExistException: /home/mturk/yt/test_storage/results_gold_moving7_0010_65ab4e48a76918f089c28495de190cfe/moving7_0010_TestHaloCountHOP_halo_count_HOP, <traceback object at 0x3227488>)
RUNNING TEST TestHaloCountPHOP_halo_count_PHOP
cbc39cb56384_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestHaloCountPHOP_halo_count_PHOP
Traceback (most recent call last):
File "tests/runall.py", line 114, in <module>
rtr.run_test(test_name)
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/runner.py",> line 120, in run_test
self._run(test_instance)
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/runner.py",> line 132, in _run
test.run()
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/halo_tests.py",> line 52, in run
halos = parallelHF(self.pf, threshold=self.threshold, dm_only=False)
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/analysis_modules/halo_finding/halo_objects.py",> line 1972, in __init__
threshold=threshold, dm_only=dm_only, rearrange=rearrange, premerge=premerge)
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/analysis_modules/halo_finding/halo_objects.py",> line 1397, in __init__
HaloList.__init__(self, data_source, dm_only)
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/analysis_modules/halo_finding/halo_objects.py",> line 1021, in __init__
self._run_finder()
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/analysis_modules/halo_finding/halo_objects.py",> line 1424, in _run_finder
self.threshold, rearrange=self.rearrange, premerge=self.premerge)
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/analysis_modules/halo_finding/parallel_hop/parallel_hop_interface.py",> line 70, in __init__
self._chain_hop()
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/analysis_modules/halo_finding/parallel_hop/parallel_hop_interface.py",> line 1467, in _chain_hop
self._init_kd_tree()
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/analysis_modules/halo_finding/parallel_hop/parallel_hop_interface.py",> line 347, in _init_kd_tree
fKD.dens = na.zeros(self.size, dtype='float64', order='F')
NameError: global name 'fKD' is not defined
Build step 'Execute shell' marked build as failure
Recording test results
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