[yt-svn] Build failed in Jenkins: yt - small data #139
matthewturk at gmail.com
matthewturk at gmail.com
Fri Nov 11 14:02:58 PST 2011
See <http://localhost:8080/job/yt%20-%20small%20data/139/changes>
Changes:
[Matthew Turk <matthewturk at gmail.com>] Merging from deliberate_fields to yt.
[Matthew Turk <matthewturk at gmail.com>] Adding a new function, rootloginfo, which will send something to mylog.info
only if on the root proc. Changing the unknown fields to be debug level logged
and rootloginfo the known fields.
[Matthew Turk <matthewturk at gmail.com>] Fixing a _con_args definition.
[Matthew Turk <matthewturk at gmail.com>] This typo fix lets translation fields work.
[Matthew Turk <matthewturk at gmail.com>] Fixed for Nyx. Particles do not as of now seem to be working correctly.
[Matthew Turk <matthewturk at gmail.com>] Re-enabling Nyx
[Matthew Turk <matthewturk at gmail.com>] We want to iterate over *all* the fields that are available, not just the ones
that are in this field info object; this does not apply to the .keys() call.
[Matthew Turk <matthewturk at gmail.com>] All tests pass.
[Matthew Turk <matthewturk at gmail.com>] Merging all the changes *from* the main development branch into
deliberate_fields for a final push to completion.
[Matthew Turk <matthewturk at gmail.com>] Turning off storeparameterfiles. See:
http://lists.spacepope.org/pipermail/yt-dev-spacepope.org/2011-November/001672.html
[Matthew Turk <matthewturk at gmail.com>] Removing preloading if the field is a field that requires ghost zones. This
will improve substantially parallelism for ghost-zone fields, as it stops the
preload operation from loading for all of the dependency grids.
[Kacper Kowalik <xarthisius.kk at gmail.com>] h5.H5Error was removed in h5py-2.0 in favour of Python native exceptions
[Matthew Turk <matthewturk at gmail.com>] Tests for Enzo datasets run
[Matthew Turk <matthewturk at gmail.com>] Merging GDF changes into deliberate fields
[Matthew Turk <matthewturk at gmail.com>] Merging into deliberate_fields the last couple weeks of development
[Matthew Turk <matthewturk at gmail.com>] Slightly refactor the field container creation.
[Matthew Turk <matthewturk at gmail.com>] Fixing enzo to allow double-loads; similar fixes will need to be added to other
functions.
[Matthew Turk <matthewturk at gmail.com>] Merging from yt tip
[Matthew Turk <matthewturk at gmail.com>] Merging from yt
[Casey W. Stark <caseywstark at gmail.com>] Adding KnownField Containers
[Casey W. Stark <caseywstark at gmail.com>] Super PEPy. Also fixed a missing import (NullFunc).
[Casey W. Stark <caseywstark at gmail.com>] pep'in
[Casey W. Stark <caseywstark at gmail.com>] Undo startindex rename
[Casey W. Stark <caseywstark at gmail.com>] Converted dunder methods to single underscore (private idiom) methods. Added more TODO notes. More cleanup.
[Casey W. Stark <caseywstark at gmail.com>] Proper superclass init calls
[Casey W. Stark <caseywstark at gmail.com>] Reorganizing. I will get rid of these dunder methods later.
[Casey W. Stark <caseywstark at gmail.com>] Some cleanup before I get to it.
[Casey W. Stark <caseywstark at gmail.com>] Adding bitbucket.org to authorized fingerprints. Removes the cert warnings.
[Casey W. Stark <caseywstark at gmail.com>] Cleaning up halo_objects module. Decided to pause after parallelHOPHalo (why not ParallelHOPHalo?). There's a lot to do here.
[Casey W. Stark <caseywstark at gmail.com>] readability stuff. pep 8 and 257
[Matthew Turk <matthewturk at gmail.com>] Merge
[Matthew Turk <matthewturk at gmail.com>] Converting some chombo fields
[Matthew Turk <matthewturk at gmail.com>] Continuing to convert things to two-level field detection. Added a
TranslationFunc as well.
[Matthew Turk <matthewturk at gmail.com>] Converting all the data_structures files to use Known fields.
[Matthew Turk <matthewturk at gmail.com>] Moving unknown field setup into the base class. Next up is actually modifying
all the frontends to know about KnownFields.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Matthew Turk <matthewturk at gmail.com>] Use NullFunc instead of a lambda.
[Matthew Turk <matthewturk at gmail.com>] Differentiate between known and unknown fields. This should help with unitful
fields we don't normally known about.
[Matthew Turk <matthewturk at gmail.com>] Merging
[Matthew Turk <matthewturk at gmail.com>] Updated all the frontends to use the new field types. Fixed a weird bug with
looking for the key in a fallback field container.
[Matthew Turk <matthewturk at gmail.com>] Initial import of the new field info containers.
This removes the idea of "Borg" field info containers, which ultimately may
need to reappear, in favor of single instances of classes. Re-importing may
wipe out changes, but I will address that as necessary. The new behavior is to
create field info containers specific to each PF, with fallbacks. The fallback
mechanism is designed to make it clearer to whom each field belongs.
Additionally, I have added the behavior that any fields found in the file will
replace the fields found in FieldInfo. However, these fields will also remove
the units specification and unless they are explicitly converted via conversion
functions found in the file, their unit conversions will be 1.0.
Right now only Enzo works, so "yt.mods" fails but importing from the enzo
frontend API works.
------------------------------------------
[...truncated 264 lines...]
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/data_point_utilities.c
yt/utilities/data_point_utilities.c: In function ‘Py_Bin1DProfile’:
yt/utilities/data_point_utilities.c:280:12: warning: unused variable ‘j’
yt/utilities/data_point_utilities.c: In function ‘Py_FillRegion’:
yt/utilities/data_point_utilities.c:1001:35: warning: unused variable ‘rk’
yt/utilities/data_point_utilities.c:1001:31: warning: unused variable ‘rj’
yt/utilities/data_point_utilities.c:1001:27: warning: unused variable ‘ri’
yt/utilities/data_point_utilities.c:996:40: warning: unused variable ‘ize’
yt/utilities/data_point_utilities.c:996:35: warning: unused variable ‘iye’
yt/utilities/data_point_utilities.c:996:30: warning: unused variable ‘ixe’
yt/utilities/data_point_utilities.c:996:25: warning: unused variable ‘izs’
yt/utilities/data_point_utilities.c:996:20: warning: unused variable ‘iys’
yt/utilities/data_point_utilities.c:996:15: warning: unused variable ‘ixs’
yt/utilities/data_point_utilities.c: In function ‘Py_FillBuffer’:
yt/utilities/data_point_utilities.c:1205:29: warning: unused variable ‘rk’
yt/utilities/data_point_utilities.c:1205:25: warning: unused variable ‘rj’
yt/utilities/data_point_utilities.c:1205:21: warning: unused variable ‘ri’
yt/utilities/data_point_utilities.c:1200:40: warning: unused variable ‘ize’
yt/utilities/data_point_utilities.c:1200:35: warning: unused variable ‘iye’
yt/utilities/data_point_utilities.c:1200:30: warning: unused variable ‘ixe’
yt/utilities/data_point_utilities.c:1200:25: warning: unused variable ‘izs’
yt/utilities/data_point_utilities.c:1200:20: warning: unused variable ‘iys’
yt/utilities/data_point_utilities.c:1200:15: warning: unused variable ‘ixs’
yt/utilities/data_point_utilities.c:1197:23: warning: unused variable ‘direction’
yt/utilities/data_point_utilities.c:1197:19: warning: unused variable ‘ll’
yt/utilities/data_point_utilities.c: At top level:
yt/utilities/data_point_utilities.c:940:13: warning: ‘dcNothing’ defined but not used
yt/utilities/data_point_utilities.c: In function ‘Py_FillBuffer’:
yt/utilities/data_point_utilities.c:1335:9: warning: ‘x_loc’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1335:16: warning: ‘y_loc’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1193:31: warning: ‘c_data’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1193:21: warning: ‘g_data’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1258:9: warning: ‘n_fields’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c: In function ‘Py_FillRegion’:
yt/utilities/data_point_utilities.c:1003:12: warning: ‘to_call’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1060:9: warning: ‘n_fields’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c: In function ‘Py_CombineGrids’:
yt/utilities/data_point_utilities.c:268:9: warning: ‘grid_src_vals’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:269:9: warning: ‘grid_dst_vals’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c: In function ‘Py_FindContours’:
yt/utilities/data_point_utilities.c:1411:9: warning: ‘status’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/data_point_utilities.o -L. -lm -lpython2.7 -o yt/utilities/data_point_utilities.so
building 'yt.utilities.hdf5_light_reader' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-DH5_USE_16_API=True -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/hdf5_light_reader.c
yt/utilities/hdf5_light_reader.c: In function ‘Py_ReadListOfDatasets’:
yt/utilities/hdf5_light_reader.c:550:7: warning: ‘nodelist’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.o -L/home/mturk/yt-x86_64/lib -L. -lm -lhdf5 -lpython2.7 -o yt/utilities/hdf5_light_reader.so
building 'yt.utilities.amr_utils' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils
compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -Iyt/utilities/_amr_utils/ -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include/freetype2 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_amr_utils/healpix_pix2vec_nest.c
gcc: yt/utilities/_amr_utils/healpix_vec2pix_nest.c
yt/utilities/_amr_utils/healpix_vec2pix_nest.c: In function ‘vec2pix_nest’:
yt/utilities/_amr_utils/healpix_vec2pix_nest.c:56:30: warning: unused variable ‘pi’
gcc: yt/utilities/_amr_utils/healpix_mk_xy2pix.c
gcc: yt/utilities/_amr_utils/union_find.c
gcc: yt/utilities/_amr_utils/healpix_mk_pix2xy.c
gcc: yt/utilities/_amr_utils/FixedInterpolator.c
yt/utilities/_amr_utils/FixedInterpolator.c: In function ‘offset_interpolate’:
yt/utilities/_amr_utils/FixedInterpolator.c:54:9: warning: unused variable ‘i’
yt/utilities/_amr_utils/FixedInterpolator.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used
gcc: yt/utilities/_amr_utils/kdtree.c
In file included from /home/mturk/yt-x86_64/include/python2.7/Python.h:8:0,
from yt/utilities/_amr_utils/kdtree.h:29,
from yt/utilities/_amr_utils/kdtree.c:32:
/home/mturk/yt-x86_64/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:214:0: note: this is the location of the previous definition
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used
gcc: yt/utilities/_amr_utils/healpix_pix2ang_nest.c
gcc: yt/utilities/_amr_utils/healpix_ang2pix_nest.c
gcc: yt/utilities/amr_utils.c
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_15PartitionedGrid_4get_isocontour_triangles’:
yt/utilities/amr_utils.c:23476:9: warning: implicit declaration of function ‘offset_fill’
yt/utilities/amr_utils.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used
yt/utilities/amr_utils.c:15203:12: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_CountTriangles’ defined but not used
yt/utilities/amr_utils.c:46641:13: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_read_art_vars’ defined but not used
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_41read_castro_particles’:
yt/utilities/amr_utils.c:47847:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_39read_art_root_vars’:
yt/utilities/amr_utils.c:46563:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_38read_art_tree’:
yt/utilities/amr_utils.c:45789:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45799:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45809:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45819:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45829:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45937:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45956:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:46072:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:46081:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:46110:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:46139:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:46203:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:46213:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:46224:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_37count_art_octs’:
yt/utilities/amr_utils.c:45257:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45266:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45299:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45308:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45356:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_36read_tiger_section’:
yt/utilities/amr_utils.c:45043:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_35read_and_seek’:
yt/utilities/amr_utils.c:44672:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:44690:8: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_f_2yt_9utilities_9amr_utils_15PartitionedGrid_integrate_ray’:
yt/utilities/amr_utils.c:20863:28: warning: ‘__pyx_v_exit_t’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_9calculate_fill_grids’:
yt/utilities/amr_utils.c:9585:7: warning: ‘__pyx_v_total’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_49kdtree_get_choices’:
yt/utilities/amr_utils.c:59053:7: warning: ‘__pyx_v_best_dim’ may be used uninitialized in this function
yt/utilities/amr_utils.c:59055:7: warning: ‘__pyx_v_my_split’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_17AdaptiveRaySource_3integrate_brick’:
yt/utilities/amr_utils.c:37402:28: warning: ‘__pyx_v_dt’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_1RecurseOctreeByLevels’:
yt/utilities/amr_utils.c:4465:26: warning: ‘__pyx_v_k’ may be used uninitialized in this function
yt/utilities/amr_utils.c:4484:28: warning: ‘__pyx_v_cz’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/amr_utils.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/union_find.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_pix2xy.o -L/home/mturk/yt-x86_64/lib -L/home/mturk/yt-x86_64/lib -L. -lm -lpng -lfreetype -lpython2.7 -o yt/utilities/amr_utils.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_libconfig/grammar.c
grammar.y:50:1: warning: function declaration isn’t a prototype
grammar.y:51:1: warning: function declaration isn’t a prototype
gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_override’:
yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!"
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_restore’:
yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!"
gcc: yt/utilities/_libconfig/strbuf.c
gcc: yt/utilities/_libconfig/scanner.c
gcc: yt/utilities/_libconfig/scanctx.c
gcc: yt/utilities/libconfig_wrapper.c
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_2read_file’:
yt/utilities/libconfig_wrapper.c:748:24: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c:757:24: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_5get_setting’:
yt/utilities/libconfig_wrapper.c:1247:23: warning: assignment discards qualifiers from pointer target type
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o -L. -lpython2.7 -o yt/utilities/libconfig_wrapper.so
building 'yt.visualization._MPL' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/visualization
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/visualization/_MPL.c
yt/visualization/_MPL.c: In function ‘Py_Pixelize’:
yt/visualization/_MPL.c:121:7: warning: unused variable ‘ndy’
yt/visualization/_MPL.c:120:7: warning: unused variable ‘ndx’
yt/visualization/_MPL.c:119:7: warning: unused variable ‘ny’
yt/visualization/_MPL.c: In function ‘Py_CPixelize’:
yt/visualization/_MPL.c:350:15: warning: unused variable ‘radius’
yt/visualization/_MPL.c:335:60: warning: unused variable ‘dsp’
yt/visualization/_MPL.c:335:54: warning: unused variable ‘dzsp’
yt/visualization/_MPL.c:335:48: warning: unused variable ‘dysp’
yt/visualization/_MPL.c:335:42: warning: unused variable ‘dxsp’
yt/visualization/_MPL.c:335:36: warning: unused variable ‘pysp’
yt/visualization/_MPL.c:335:30: warning: unused variable ‘pxsp’
yt/visualization/_MPL.c:335:25: warning: unused variable ‘zsp’
yt/visualization/_MPL.c:335:20: warning: unused variable ‘ysp’
yt/visualization/_MPL.c:335:15: warning: unused variable ‘xsp’
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -L. -lm -lpython2.7 -o yt/visualization/_MPL.so
running scons
+ cd yt/utilities/kdtree
+ make
Using Forthon ()
Forthon -F gfortran --compile_first fKD_source --no2underscores --with-numpy --fopt "-O3" fKD fKD_source.f90
make[1]: Entering directory `<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.wrappergenerator import wrappergenerator_main;wrappergenerator_main()" \
--realsize 8 \
--f90 -t linux2 --underscoring --no2underscores -F gfortran \
fKD ../../fKD.v
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c fKD_p.F90
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -O3 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c ../../fKD_source.f90
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -O3 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c ../../fKD.f90
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.preprocess import main;main()" --f90 -tlinux2 --underscoring --no2underscores -F gfortran /home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon/Forthon.h Forthon.h
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.preprocess import main;main()" --f90 -tlinux2 --underscoring --no2underscores -F gfortran /home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon/Forthon.c Forthon.c
make[1]: Leaving directory `<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
IN FORTHON_BUILDER
running build
running build_ext
building 'fKDpy' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/fKDpymodule.c -o build/temp.linux-x86_64-2.7/fKDpymodule.o
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h:116:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:117:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:118:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:119:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:129:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:130:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:131:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:132:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:151:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:152:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:157:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:158:3: warning: function declaration isn’t a prototype
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h: In function ‘ForthonPackage_delvarattr’:
build/temp.linux-x86_64-2.7/Forthon.h:1701:20: warning: cast from pointer to integer of different size
build/temp.linux-x86_64-2.7/Forthon.h:1726:20: warning: cast from pointer to integer of different size
build/temp.linux-x86_64-2.7/fKDpymodule.c: At top level:
build/temp.linux-x86_64-2.7/Forthon.h:194:15: warning: ‘cputime’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:574:18: warning: ‘Forthon_getscalardict’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:580:18: warning: ‘Forthon_getarraydict’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:910:12: warning: ‘Forthon_setscalardict’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:916:12: warning: ‘Forthon_setarraydict’ defined but not used
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/Forthon.c -o build/temp.linux-x86_64-2.7/Forthon.o
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/fKDpymodule.o build/temp.linux-x86_64-2.7/Forthon.o build/temp.linux-x86_64-2.7/fKD.o build/temp.linux-x86_64-2.7/fKD_p.o build/temp.linux-x86_64-2.7/fKD_source.o -L/usr/lib/x86_64-linux-gnu/gcc/x86_64-linux-gnu/4.5.2 -L/home/mturk/yt-x86_64/lib -lgfortran -lpython2.7 -o ./fKDpy.so
+ cd ../../..
[workspace] $ /bin/sh -xe /tmp/hudson7196370423999963316.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold
Traceback (most recent call last):
File "tests/runall.py", line 6, in <module>
from yt.utilities.answer_testing.api import \
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/__init__.py",> line 26, in <module>
import runner, output_tests
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/runner.py",> line 34, in <module>
from output_tests import test_registry, MultipleOutputTest, \
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/output_tests.py",> line 27, in <module>
from yt.mods import *
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/mods.py",> line 86, in <module>
from yt.frontends.gdf.api import \
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/frontends/gdf/api.py",> line 30, in <module>
from .data_structures import \
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/frontends/gdf/data_structures.py",> line 38, in <module>
from .fields import GDFFieldInfo, KnownGDFFields
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/frontends/gdf/fields.py",> line 26, in <module>
from yt.data_objects.field_info_container import \
ImportError: cannot import name CodeFieldInfoContainer
Build step 'Execute shell' marked build as failure
Recording test results
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