[Yt-svn] Build failed in Jenkins: yt - small data #115
matthewturk at gmail.com
matthewturk at gmail.com
Thu Nov 3 06:03:01 PDT 2011
See <http://localhost:8080/job/yt%20-%20small%20data/115/changes>
Changes:
[Stephen Skory <s at skory.us>] Fixing the setup for spatial so it compiles and is installed
on Linux. For some reason what I had before worked on Mac OS X,
but not Linux.
[Stephen Skory <s at skory.us>] Ooops. ; != :.
[Stephen Skory <s at skory.us>] Forgot to add the boolean region tests to here.
[Stephen Skory <s at skory.us>] Merge.
[Stephen Skory <s at skory.us>] Adding answer testing for the boolean regions.
[Stephen Skory <s at skory.us>] Particles in boolean regions appear to work.
[Stephen Skory <s at skory.us>] Force regions that have been touched by the boolean stuff to
make correct cut_masks and not pull the wrong ones.
[Stephen Skory <s at skory.us>] Merge.
[Stephen Skory <s at skory.us>] Initial go at a boolean hybrid data container. Not completely working yet,
but much progress has been made.
[Stephen Skory <s at skory.us>] Adding a modified scipy.spatial back into yt and parallelHOP.
It can be used with 'tree = "C"' when calling parallelHF.
It is much slower, but hopefully lower (or can be made)
in memory than the Fortran kdtree.
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[...truncated 246 lines...]
building 'yt.utilities.spatial._distance_wrap' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/spatial/src
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/spatial/src/distance.c
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used
gcc: yt/utilities/spatial/src/distance_wrap.c
In file included from /home/mturk/yt-x86_64/include/python2.7/Python.h:8:0,
from yt/utilities/spatial/src/distance_wrap.c:39:
/home/mturk/yt-x86_64/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:214:0: note: this is the location of the previous definition
yt/utilities/spatial/src/distance_wrap.c: In function ‘pdist_weighted_minkowski_wrap’:
yt/utilities/spatial/src/distance_wrap.c:866:7: warning: assignment discards qualifiers from pointer target type
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/spatial/src/distance_wrap.o build/temp.linux-x86_64-2.7/yt/utilities/spatial/src/distance.o -L. -lpython2.7 -o yt/utilities/spatial/_distance_wrap.so
building 'yt.utilities.data_point_utilities' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/data_point_utilities.c
yt/utilities/data_point_utilities.c: In function ‘Py_Bin1DProfile’:
yt/utilities/data_point_utilities.c:280:12: warning: unused variable ‘j’
yt/utilities/data_point_utilities.c: In function ‘Py_FillRegion’:
yt/utilities/data_point_utilities.c:992:35: warning: unused variable ‘rk’
yt/utilities/data_point_utilities.c:992:31: warning: unused variable ‘rj’
yt/utilities/data_point_utilities.c:992:27: warning: unused variable ‘ri’
yt/utilities/data_point_utilities.c:987:40: warning: unused variable ‘ize’
yt/utilities/data_point_utilities.c:987:35: warning: unused variable ‘iye’
yt/utilities/data_point_utilities.c:987:30: warning: unused variable ‘ixe’
yt/utilities/data_point_utilities.c:987:25: warning: unused variable ‘izs’
yt/utilities/data_point_utilities.c:987:20: warning: unused variable ‘iys’
yt/utilities/data_point_utilities.c:987:15: warning: unused variable ‘ixs’
yt/utilities/data_point_utilities.c: In function ‘Py_FillBuffer’:
yt/utilities/data_point_utilities.c:1195:29: warning: unused variable ‘rk’
yt/utilities/data_point_utilities.c:1195:25: warning: unused variable ‘rj’
yt/utilities/data_point_utilities.c:1195:21: warning: unused variable ‘ri’
yt/utilities/data_point_utilities.c:1190:40: warning: unused variable ‘ize’
yt/utilities/data_point_utilities.c:1190:35: warning: unused variable ‘iye’
yt/utilities/data_point_utilities.c:1190:30: warning: unused variable ‘ixe’
yt/utilities/data_point_utilities.c:1190:25: warning: unused variable ‘izs’
yt/utilities/data_point_utilities.c:1190:20: warning: unused variable ‘iys’
yt/utilities/data_point_utilities.c:1190:15: warning: unused variable ‘ixs’
yt/utilities/data_point_utilities.c:1187:23: warning: unused variable ‘direction’
yt/utilities/data_point_utilities.c:1187:19: warning: unused variable ‘ll’
yt/utilities/data_point_utilities.c:1325:9: warning: ‘x_loc’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1325:16: warning: ‘y_loc’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1183:31: warning: ‘c_data’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1183:21: warning: ‘g_data’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1248:9: warning: ‘n_fields’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c: In function ‘Py_FillRegion’:
yt/utilities/data_point_utilities.c:994:12: warning: ‘to_call’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:1051:9: warning: ‘n_fields’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c: In function ‘Py_CombineGrids’:
yt/utilities/data_point_utilities.c:268:9: warning: ‘grid_src_vals’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c:269:9: warning: ‘grid_dst_vals’ may be used uninitialized in this function
yt/utilities/data_point_utilities.c: In function ‘Py_FindContours’:
yt/utilities/data_point_utilities.c:1401:9: warning: ‘status’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/data_point_utilities.o -L. -lm -lpython2.7 -o yt/utilities/data_point_utilities.so
building 'yt.utilities.hdf5_light_reader' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-DH5_USE_16_API=True -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/hdf5_light_reader.c
yt/utilities/hdf5_light_reader.c: In function ‘Py_ReadListOfDatasets’:
yt/utilities/hdf5_light_reader.c:550:7: warning: ‘nodelist’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.o -L/home/mturk/yt-x86_64/lib -L. -lm -lhdf5 -lpython2.7 -o yt/utilities/hdf5_light_reader.so
building 'yt.utilities.amr_utils' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils
compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -Iyt/utilities/_amr_utils/ -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include/freetype2 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_amr_utils/healpix_pix2vec_nest.c
gcc: yt/utilities/_amr_utils/healpix_vec2pix_nest.c
yt/utilities/_amr_utils/healpix_vec2pix_nest.c: In function ‘vec2pix_nest’:
yt/utilities/_amr_utils/healpix_vec2pix_nest.c:56:30: warning: unused variable ‘pi’
gcc: yt/utilities/_amr_utils/healpix_mk_xy2pix.c
gcc: yt/utilities/_amr_utils/union_find.c
gcc: yt/utilities/_amr_utils/healpix_mk_pix2xy.c
gcc: yt/utilities/_amr_utils/FixedInterpolator.c
yt/utilities/_amr_utils/FixedInterpolator.c: In function ‘offset_interpolate’:
yt/utilities/_amr_utils/FixedInterpolator.c:54:9: warning: unused variable ‘i’
yt/utilities/_amr_utils/FixedInterpolator.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used
gcc: yt/utilities/_amr_utils/kdtree.c
In file included from /home/mturk/yt-x86_64/include/python2.7/Python.h:8:0,
from yt/utilities/_amr_utils/kdtree.h:29,
from yt/utilities/_amr_utils/kdtree.c:32:
/home/mturk/yt-x86_64/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:214:0: note: this is the location of the previous definition
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used
gcc: yt/utilities/_amr_utils/healpix_pix2ang_nest.c
gcc: yt/utilities/_amr_utils/healpix_ang2pix_nest.c
gcc: yt/utilities/amr_utils.c
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_15PartitionedGrid_4get_isocontour_triangles’:
yt/utilities/amr_utils.c:22897:9: warning: implicit declaration of function ‘offset_fill’
yt/utilities/amr_utils.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used
yt/utilities/amr_utils.c:14527:12: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_CountTriangles’ defined but not used
yt/utilities/amr_utils.c:45879:13: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_read_art_vars’ defined but not used
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_39read_castro_particles’:
yt/utilities/amr_utils.c:47085:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_37read_art_root_vars’:
yt/utilities/amr_utils.c:45801:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_36read_art_tree’:
yt/utilities/amr_utils.c:45027:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45037:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45047:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45057:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45067:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45175:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45194:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45310:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45319:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45348:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45377:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45441:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45451:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:45462:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_35count_art_octs’:
yt/utilities/amr_utils.c:44495:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:44504:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:44537:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:44546:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c:44594:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_34read_tiger_section’:
yt/utilities/amr_utils.c:44281:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
yt/utilities/amr_utils.c: In function ‘__pyx_f_2yt_9utilities_9amr_utils_15PartitionedGrid_integrate_ray’:
yt/utilities/amr_utils.c:20284:28: warning: ‘__pyx_v_exit_t’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_47kdtree_get_choices’:
yt/utilities/amr_utils.c:58291:7: warning: ‘__pyx_v_best_dim’ may be used uninitialized in this function
yt/utilities/amr_utils.c:58293:7: warning: ‘__pyx_v_my_split’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_17AdaptiveRaySource_3integrate_brick’:
yt/utilities/amr_utils.c:36823:28: warning: ‘__pyx_v_dt’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_1RecurseOctreeByLevels’:
yt/utilities/amr_utils.c:4447:26: warning: ‘__pyx_v_k’ may be used uninitialized in this function
yt/utilities/amr_utils.c:4466:28: warning: ‘__pyx_v_cz’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/amr_utils.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/union_find.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_pix2xy.o -L/home/mturk/yt-x86_64/lib -L/home/mturk/yt-x86_64/lib -L. -lm -lpng -lfreetype -lpython2.7 -o yt/utilities/amr_utils.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_libconfig/grammar.c
grammar.y:50:1: warning: function declaration isn’t a prototype
grammar.y:51:1: warning: function declaration isn’t a prototype
gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_override’:
yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!"
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_restore’:
yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!"
gcc: yt/utilities/_libconfig/strbuf.c
gcc: yt/utilities/_libconfig/scanner.c
gcc: yt/utilities/_libconfig/scanctx.c
gcc: yt/utilities/libconfig_wrapper.c
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_2read_file’:
yt/utilities/libconfig_wrapper.c:748:24: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c:757:24: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_5get_setting’:
yt/utilities/libconfig_wrapper.c:1247:23: warning: assignment discards qualifiers from pointer target type
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o -L. -lpython2.7 -o yt/utilities/libconfig_wrapper.so
building 'yt.visualization._MPL' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/visualization
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/visualization/_MPL.c
yt/visualization/_MPL.c: In function ‘Py_Pixelize’:
yt/visualization/_MPL.c:121:7: warning: unused variable ‘ndy’
yt/visualization/_MPL.c:120:7: warning: unused variable ‘ndx’
yt/visualization/_MPL.c:119:7: warning: unused variable ‘ny’
yt/visualization/_MPL.c: In function ‘Py_CPixelize’:
yt/visualization/_MPL.c:350:15: warning: unused variable ‘radius’
yt/visualization/_MPL.c:335:60: warning: unused variable ‘dsp’
yt/visualization/_MPL.c:335:54: warning: unused variable ‘dzsp’
yt/visualization/_MPL.c:335:48: warning: unused variable ‘dysp’
yt/visualization/_MPL.c:335:42: warning: unused variable ‘dxsp’
yt/visualization/_MPL.c:335:36: warning: unused variable ‘pysp’
yt/visualization/_MPL.c:335:30: warning: unused variable ‘pxsp’
yt/visualization/_MPL.c:335:25: warning: unused variable ‘zsp’
yt/visualization/_MPL.c:335:20: warning: unused variable ‘ysp’
yt/visualization/_MPL.c:335:15: warning: unused variable ‘xsp’
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -L. -lm -lpython2.7 -o yt/visualization/_MPL.so
running scons
+ cd yt/utilities/kdtree
+ make
Using Forthon ()
Forthon -F gfortran --compile_first fKD_source --no2underscores --with-numpy --fopt "-O3" fKD fKD_source.f90
make[1]: Entering directory `<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.wrappergenerator import wrappergenerator_main;wrappergenerator_main()" \
--realsize 8 \
--f90 -t linux2 --underscoring --no2underscores -F gfortran \
fKD ../../fKD.v
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c fKD_p.F90
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -O3 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c ../../fKD_source.f90
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -O3 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c ../../fKD.f90
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.preprocess import main;main()" --f90 -tlinux2 --underscoring --no2underscores -F gfortran /home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon/Forthon.h Forthon.h
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.preprocess import main;main()" --f90 -tlinux2 --underscoring --no2underscores -F gfortran /home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon/Forthon.c Forthon.c
make[1]: Leaving directory `<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
IN FORTHON_BUILDER
running build
running build_ext
building 'fKDpy' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/fKDpymodule.c -o build/temp.linux-x86_64-2.7/fKDpymodule.o
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h:116:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:117:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:118:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:119:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:129:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:130:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:131:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:132:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:151:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:152:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:157:3: warning: function declaration isn’t a prototype
build/temp.linux-x86_64-2.7/Forthon.h:158:3: warning: function declaration isn’t a prototype
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h: In function ‘ForthonPackage_delvarattr’:
build/temp.linux-x86_64-2.7/Forthon.h:1701:20: warning: cast from pointer to integer of different size
build/temp.linux-x86_64-2.7/Forthon.h:1726:20: warning: cast from pointer to integer of different size
build/temp.linux-x86_64-2.7/fKDpymodule.c: At top level:
build/temp.linux-x86_64-2.7/Forthon.h:194:15: warning: ‘cputime’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:574:18: warning: ‘Forthon_getscalardict’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:580:18: warning: ‘Forthon_getarraydict’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:910:12: warning: ‘Forthon_setscalardict’ defined but not used
build/temp.linux-x86_64-2.7/Forthon.h:916:12: warning: ‘Forthon_setarraydict’ defined but not used
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/Forthon.c -o build/temp.linux-x86_64-2.7/Forthon.o
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/fKDpymodule.o build/temp.linux-x86_64-2.7/Forthon.o build/temp.linux-x86_64-2.7/fKD.o build/temp.linux-x86_64-2.7/fKD_p.o build/temp.linux-x86_64-2.7/fKD_source.o -L/usr/lib/x86_64-linux-gnu/gcc/x86_64-linux-gnu/4.5.2 -L/home/mturk/yt-x86_64/lib -lgfortran -lpython2.7 -o ./fKDpy.so
+ cd ../../..
[workspace] $ /bin/sh -xe /tmp/hudson8040596347010509518.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold
Initializing TestRegistry
Initializing test_registry
Traceback (most recent call last):
File "tests/runall.py", line 6, in <module>
from yt.utilities.answer_testing.api import \
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/api.py",> line 54, in <module>
from .boolean_region_test import \
ImportError: No module named boolean_region_test
Build step 'Execute shell' marked build as failure
Recording test results
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