[Yt-svn] commit/yt: 2 new changesets
Bitbucket
commits-noreply at bitbucket.org
Mon Jul 25 06:53:33 PDT 2011
2 new changesets in yt:
http://bitbucket.org/yt_analysis/yt/changeset/432d78acf1c4/
changeset: 432d78acf1c4
branch: yt
user: brittonsmith
date: 2011-07-25 15:53:14
summary: Added factor of (1 + z) for doppler shift from peculiar velocities
since the velocities used are in the proper frame.
affected #: 1 file (232 bytes)
--- a/yt/analysis_modules/absorption_spectrum/absorption_spectrum.py Sat Jul 16 12:22:21 2011 -0400
+++ b/yt/analysis_modules/absorption_spectrum/absorption_spectrum.py Mon Jul 25 09:53:14 2011 -0400
@@ -144,8 +144,9 @@
column_density = field_data[continuum['field_name']] * field_data['dl']
delta_lambda = continuum['wavelength'] * field_data['redshift']
if use_peculiar_velocity:
- delta_lambda += continuum['wavelength'] * field_data['los_velocity'] / \
- speed_of_light_cgs
+ # include factor of (1 + z) because our velocity is in proper frame.
+ delta_lambda += continuum['wavelength'] * (1 + field_data['redshift']) * \
+ field_data['los_velocity'] / speed_of_light_cgs
this_wavelength = delta_lambda + continuum['wavelength']
right_index = na.digitize(this_wavelength, self.lambda_bins).clip(0, self.n_lambda)
left_index = na.digitize((this_wavelength *
@@ -178,8 +179,9 @@
column_density = field_data[line['field_name']] * field_data['dl']
delta_lambda = line['wavelength'] * field_data['redshift']
if use_peculiar_velocity:
- delta_lambda += line['wavelength'] * field_data['los_velocity'] / \
- speed_of_light_cgs
+ # include factor of (1 + z) because our velocity is in proper frame.
+ delta_lambda += line['wavelength'] * (1 + field_data['redshift']) * \
+ field_data['los_velocity'] / speed_of_light_cgs
thermal_b = km_per_cm * na.sqrt((2 * boltzmann_constant_cgs *
field_data['Temperature']) /
(amu_cgs * line['atomic_mass']))
http://bitbucket.org/yt_analysis/yt/changeset/5574dca1fb66/
changeset: 5574dca1fb66
branch: yt
user: brittonsmith
date: 2011-07-25 15:53:27
summary: Merged.
affected #: 44 files (77 bytes)
--- a/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -95,7 +95,7 @@
quiet=True)
config.make_config_py()
- config.make_svn_version_py()
+ #config.make_svn_version_py()
config.add_subpackage('yt','yt')
config.add_scripts("scripts/*")
--- a/yt/analysis_modules/coordinate_transformation/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/coordinate_transformation/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('coordinate_transformation',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/halo_finding/fof/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/halo_finding/fof/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -12,5 +12,5 @@
"kd.c"],
libraries=["m"])
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/halo_finding/hop/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/halo_finding/hop/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -15,5 +15,5 @@
"hop_slice.c",
"hop_smooth.c",])
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/halo_finding/parallel_hop/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/halo_finding/parallel_hop/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('parallel_hop',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/halo_finding/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/halo_finding/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -11,5 +11,5 @@
config.add_subpackage("hop")
config.add_subpackage("parallel_hop")
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/halo_mass_function/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/halo_mass_function/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('halo_mass_function',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/halo_merger_tree/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/halo_merger_tree/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('halo_merger_tree',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/halo_profiler/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/halo_profiler/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('halo_profiler',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/hierarchy_subset/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/hierarchy_subset/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('hierarchy_subset',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/level_sets/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/level_sets/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('level_sets',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/light_cone/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/light_cone/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('light_cone',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/light_ray/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/light_ray/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('light_ray',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -5,7 +5,7 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('analysis_modules',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
config.add_subpackage("absorption_spectrum")
config.add_subpackage("coordinate_transformation")
config.add_subpackage("halo_finding")
--- a/yt/analysis_modules/simulation_handler/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/simulation_handler/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('simulation_handler',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/spectral_integrator/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/spectral_integrator/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('spectral_integrator',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/star_analysis/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/star_analysis/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('star_analysis',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/analysis_modules/two_point_functions/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/analysis_modules/two_point_functions/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('two_point_functions',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/astro_objects/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/astro_objects/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('astro_objects',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/data_objects/field_info_container.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/data_objects/field_info_container.py Mon Jul 25 09:53:27 2011 -0400
@@ -158,6 +158,7 @@
pf.hubble_constant = pf.cosmological_simulation = 0.0
pf.domain_left_edge = na.zeros(3, 'float64')
pf.domain_right_edge = na.ones(3, 'float64')
+ pf.dimensionality = 3
self.pf = pf
class fake_hierarchy(object):
class fake_io(object):
--- a/yt/data_objects/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/data_objects/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('data_objects',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/art/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/art/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -6,5 +6,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('art',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/castro/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/castro/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('castro', parent_package, top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/chombo/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/chombo/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('chombo',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/enzo/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/enzo/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('enzo',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/flash/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/flash/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('flash',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/gadget/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/gadget/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('gadget',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/gdf/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/gdf/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('gdf',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/maestro/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/maestro/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('maestro',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/orion/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/orion/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('orion',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/ramses/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/ramses/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -13,5 +13,5 @@
depends=glob.glob("yt/frontends/ramses/ramses_headers/*.hh")
)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -5,7 +5,7 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('frontends',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
config.add_subpackage("chombo")
config.add_subpackage("enzo")
config.add_subpackage("flash")
--- a/yt/frontends/stream/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/stream/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('stream',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/frontends/tiger/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/frontends/tiger/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('tiger',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/gui/opengl_widgets/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/gui/opengl_widgets/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('opengl_widgets',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/gui/reason/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/gui/reason/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -6,5 +6,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('reason',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/gui/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/gui/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -9,5 +9,5 @@
config.add_subpackage('traited_explorer')
config.add_subpackage('reason')
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/gui/traited_explorer/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/gui/traited_explorer/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -6,5 +6,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('traited_explorer',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -13,5 +13,5 @@
config.add_subpackage('utilities')
config.add_subpackage('visualization')
config.make_config_py()
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/utilities/answer_testing/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/utilities/answer_testing/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('answer_testing',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/utilities/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/utilities/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -184,5 +184,5 @@
define_macros = [("HAVE_XLOCALE_H", True)]
)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/visualization/image_panner/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/visualization/image_panner/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -8,5 +8,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('image_panner',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
--- a/yt/visualization/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/visualization/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -7,6 +7,6 @@
config.add_subpackage("image_panner")
config.add_subpackage("volume_rendering")
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
config.add_extension("_MPL", "_MPL.c", libraries=["m"])
return config
--- a/yt/visualization/volume_rendering/setup.py Mon Jul 25 09:53:14 2011 -0400
+++ b/yt/visualization/volume_rendering/setup.py Mon Jul 25 09:53:27 2011 -0400
@@ -10,5 +10,5 @@
from numpy.distutils.misc_util import Configuration
config = Configuration('volume_rendering',parent_package,top_path)
config.make_config_py() # installs __config__.py
- config.make_svn_version_py()
+ #config.make_svn_version_py()
return config
Repository URL: https://bitbucket.org/yt_analysis/yt/
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