[Yt-svn] Build failed in Jenkins: yt #18
matthewturk at gmail.com
matthewturk at gmail.com
Wed Jul 20 09:02:16 PDT 2011
See <http://localhost:8080/job/yt/18/changes>
Changes:
[Britton Smith <brittonsmith at gmail.com>] Changed AngularMomentumX, Y, and Z fields to not be listed as
vector fields, since they are not. This was causing errors when
using these fields with derived quantities.
[Britton Smith <brittonsmith at gmail.com>] Merged.
[Britton Smith <brittonsmith at gmail.com>] Changed TotalQuantity to give 0.0, instead of 0, which I think was
causing problems when a processor had no cells to include in the
calculation. Also, changed the 0-sized array in mpi_catarray to
zeros instead of empty. One of these things fixed the issue.
[Sam Skillman <sam.skillman at gmail.com>] Use pf.dimensionality in DivV calculation.
[Sam Skillman <sam.skillman at gmail.com>] For now, reduce used processors to next lowest power of 2 in kd-tree rendering. Working on a generalization...
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[...truncated 343 lines...]
yt/utilities/amr_utils.c:13757: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_CountTriangles’ defined but not used
yt/utilities/amr_utils.c:40964: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_read_art_vars’ defined but not used
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_38initialize_library’:
yt/utilities/amr_utils.c:50853: warning: ‘__pyx_v_initialized’ is used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_f_2yt_9utilities_9amr_utils_15PartitionedGrid_integrate_ray’:
yt/utilities/amr_utils.c:19139: warning: ‘__pyx_v_exit_t’ may be used uninitialized in this function
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_1RecurseOctreeByLevels’:
yt/utilities/amr_utils.c:4275: warning: ‘__pyx_v_k’ may be used uninitialized in this function
yt/utilities/amr_utils.c:4294: warning: ‘__pyx_v_cz’ may be used uninitialized in this function
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/amr_utils.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/union_find.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_pix2xy.o -L/home/mturk/yt-x86_64/lib -L/home/mturk/yt-x86_64/lib -L. -lm -lpng -lfreetype -lpython2.7 -o yt/utilities/amr_utils.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_libconfig/grammar.c
grammar.y:50: warning: function declaration isn’t a prototype
grammar.y:51: warning: function declaration isn’t a prototype
gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_override’:
yt/utilities/_libconfig/libconfig.c:100: warning: #warning "No way to modify calling thread's locale!"
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_restore’:
yt/utilities/_libconfig/libconfig.c:121: warning: #warning "No way to modify calling thread's locale!"
gcc: yt/utilities/_libconfig/strbuf.c
gcc: yt/utilities/_libconfig/scanner.c
gcc: yt/utilities/_libconfig/scanctx.c
gcc: yt/utilities/libconfig_wrapper.c
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_2read_file’:
yt/utilities/libconfig_wrapper.c:727: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c:736: warning: assignment discards qualifiers from pointer target type
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_5get_setting’:
yt/utilities/libconfig_wrapper.c:1221: warning: assignment discards qualifiers from pointer target type
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o -L. -lpython2.7 -o yt/utilities/libconfig_wrapper.so
building 'yt.visualization._MPL' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/visualization
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/visualization/_MPL.c
yt/visualization/_MPL.c: In function ‘Py_Pixelize’:
yt/visualization/_MPL.c:121: warning: unused variable ‘ndy’
yt/visualization/_MPL.c:120: warning: unused variable ‘ndx’
yt/visualization/_MPL.c:119: warning: unused variable ‘ny’
yt/visualization/_MPL.c: In function ‘Py_CPixelize’:
yt/visualization/_MPL.c:350: warning: unused variable ‘radius’
yt/visualization/_MPL.c:335: warning: unused variable ‘dsp’
yt/visualization/_MPL.c:335: warning: unused variable ‘dzsp’
yt/visualization/_MPL.c:335: warning: unused variable ‘dysp’
yt/visualization/_MPL.c:335: warning: unused variable ‘dxsp’
yt/visualization/_MPL.c:335: warning: unused variable ‘pysp’
yt/visualization/_MPL.c:335: warning: unused variable ‘pxsp’
yt/visualization/_MPL.c:335: warning: unused variable ‘zsp’
yt/visualization/_MPL.c:335: warning: unused variable ‘ysp’
yt/visualization/_MPL.c:335: warning: unused variable ‘xsp’
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -L. -lm -lpython2.7 -o yt/visualization/_MPL.so
running scons
[workspace] $ /bin/sh -xe /tmp/hudson4258536223753396124.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold
/home/mturk/yt-x86_64/lib/python2.7/site-packages/matplotlib/__init__.py:854: UserWarning: This call to matplotlib.use() has no effect
because the the backend has already been chosen;
matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.
if warn: warnings.warn(_use_error_msg)
<http://localhost:8080/job/yt/ws/yt/utilities/command_line.py>:275: UserWarning: Module argparse was already imported from /home/mturk/yt-x86_64/lib/python2.7/argparse.pyc, but /home/mturk/yt-x86_64/lib/python2.7/site-packages is being added to sys.path
import pkg_resources
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Warning: divide by zero encountered in divide
Warning: divide by zero encountered in divide
Warning: invalid value encountered in sqrt
Warning: divide by zero encountered in divide
Warning: divide by zero encountered in divide
Warning: invalid value encountered in sqrt
Warning: divide by zero encountered in divide
Initializing TestRegistry
Initializing test_registry
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_AveragedDensity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_Density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_DivV SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_Entropy SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_ParticleMassMsun ['particle_mass']
SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_Pressure SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_SoundSpeed SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_Temperature SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_particle_density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_particle_position_x ['particle_position_x']
SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_x-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_y-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_AllData_all_data_z-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_AveragedDensity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_Density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_DivV SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_Entropy SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_ParticleMassMsun ['particle_mass']
SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_Pressure SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_SoundSpeed SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_Temperature SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_particle_density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_particle_position_x ['particle_position_x']
SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_x-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_y-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CenteredSphere_centered_sphere_z-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_AveragedDensity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_Density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_DivV SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_Entropy SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_ParticleMassMsun ['particle_mass']
SUCCEEDED
b29dbb5b6b78_moving7_0010_Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_Pressure SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_SoundSpeed SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_Temperature SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_particle_density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_particle_position_x ['particle_position_x']
SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_x-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_y-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_CornerSphere_corner_sphere_z-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_AveragedDensity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_Density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_DivV SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_Entropy SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_ParticleMassMsun ['particle_mass']
SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_Pressure SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_SoundSpeed SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_Temperature SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_particle_density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_particle_position_x ['particle_position_x']
SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_x-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_y-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_OffCenteredSphere_off_centered_sphere_z-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_AveragedDensity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_Density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_DivV SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_Entropy SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_Pressure SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_SoundSpeed SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_Temperature SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_particle_density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe RunniWarning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
Warning: invalid value encountered in divide
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ng moving7_0010_TestGasDistribution_profile_density_test_x-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_y-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestGasDistribution_profile_density_test_z-velocity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestProjection_projection_test_0_AveragedDensity SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestProjection_projection_test_0_Density SUCCEEDED
b29dbb5b6b78_moving7_0010_65ab4e48a76918f089c28495de190cfe Running moving7_0010_TestProjection_projection_test_0_DivV
Traceback (most recent call last):
File "tests/runall.py", line 99, in <module>
rtr.run_test(test_name)
File "<http://localhost:8080/job/yt/ws/yt/utilities/answer_testing/runner.py",> line 116, in run_test
self._run(test_instance)
File "<http://localhost:8080/job/yt/ws/yt/utilities/answer_testing/runner.py",> line 128, in _run
test.run()
File "<http://localhost:8080/job/yt/ws/yt/utilities/answer_testing/hydro_tests.py",> line 39, in run
proj = self.pf.h.proj(self.axis, self.field)
File "<http://localhost:8080/job/yt/ws/yt/data_objects/data_containers.py",> line 1510, in __init__
self._refresh_data()
File "<http://localhost:8080/job/yt/ws/yt/data_objects/data_containers.py",> line 274, in _refresh_data
self.get_data()
File "<http://localhost:8080/job/yt/ws/yt/data_objects/data_containers.py",> line 1578, in get_data
self._get_dependencies(fields), self.hierarchy.io)
File "<http://localhost:8080/job/yt/ws/yt/utilities/parallel_tools/parallel_analysis_interface.py",> line 1227, in _get_dependencies
deps += ensure_list(fi[field].get_dependencies(pf=self.pf).requested)
File "<http://localhost:8080/job/yt/ws/yt/data_objects/field_info_container.py",> line 290, in get_dependencies
e[self.name]
File "<http://localhost:8080/job/yt/ws/yt/data_objects/field_info_container.py",> line 191, in __missing__
vv = FI[item](nfd)
File "<http://localhost:8080/job/yt/ws/yt/data_objects/field_info_container.py",> line 311, in __call__
dd = self._function(self, data)
File "<http://localhost:8080/job/yt/ws/yt/data_objects/universal_fields.py",> line 528, in _DivV
if data.pf.dimensionality > 1:
AttributeError: 'fake_parameter_file' object has no attribute 'dimensionality'
Build step 'Execute shell' marked build as failure
Recording test results
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