[yt-svn] Build failed in Jenkins: yt - galaxy0030 #72

Tue Dec 20 23:01:23 PST 2011

See <http://localhost:8080/job/yt%20-%20galaxy0030/72/changes>

Changes:

[Matthew Turk <matthewturk at gmail.com>] Changing leftover_args to unparsed_args and putting that in yt.mods.

[Matthew Turk <matthewturk at gmail.com>] Moving to include full set of args in sys.args.  Note that this will keep
around the leftover args in yt.startup_tasks.leftover_args .

[Matthew Turk <matthewturk at gmail.com>] Fixing an issue that prevented importing yt in scripts.

[Matthew Turk <matthewturk at gmail.com>] Fixing up the way help is printed out.  I believe that at this point we can
start integrating this with external scripts.

[Matthew Turk <matthewturk at gmail.com>] Merging from the mainline branch into config_reorg.

[Matthew Turk <matthewturk at gmail.com>] Adding "Name" to the static output min rep

[Matthew Turk <matthewturk at gmail.com>] No-op merge because of dangling changeset

[Matthew Turk <matthewturk at gmail.com>] Merge

[Matthew Turk <matthewturk at gmail.com>] Move around parallelism check and move --parallel into the parser

[Matthew Turk <matthewturk at gmail.com>] Adding missing import

[Matthew Turk <matthewturk at gmail.com>] Adding checks for dimensionality < 3 in FLASH files.

[Matthew Turk <matthewturk at gmail.com>] Removing print statement

[Matthew Turk <matthewturk at gmail.com>] Few more fixed, removing cmdln.py

[Matthew Turk <matthewturk at gmail.com>] Major refactoring of the command-line parser to use argparse instead of cmdln.

 * Everything is now a subclass of YTCommand
 * Adding new commands is clearer and easier
 * Uses argparse, a python 2.7 library
 * We can use --config something=another with it
 * Removed all of the pasteboard
 * Moved a bunch of the yt source handling into yt/funcs.py
 * Removed pexpect.py

[Matthew Turk <matthewturk at gmail.com>] Beginning the consolidation of the --whatever argument parsing and moving a few
important items into a startup_items.py file.  Command line utilities sort of
work but will not recognize or receive commands line --parallel.

[Matthew Turk <matthewturk at gmail.com>] A few more minor adjustments to the minimal representation model, including one
that generates the object as best it can from the metadata.

[Matthew Turk <matthewturk at gmail.com>] Fixing up some things in the minimal representation module.

[Matthew Turk <matthewturk at gmail.com>] Adding a set of minimal representation objects.

------------------------------------------
Started by an SCM change
[workspace] $ hg incoming --quiet --bundle hg.bundle --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev yt
[workspace] $ hg unbundle hg.bundle
adding changesets
adding manifests
adding file changes
added 18 changesets with 32 changes to 10 files
(run 'hg update' to get a working copy)
[workspace] $ hg update --clean --rev yt
10 files updated, 0 files merged, 3 files removed, 0 files unresolved
[workspace] $ hg log --rev . --template {node}
[workspace] $ /bin/sh -xe /tmp/hudson3506472150506958795.sh
+ echo /home/mturk/yt-x86_64/
+ echo /home/mturk/yt-x86_64/
+ echo /home/mturk/yt-x86_64/
+ export LDFLAGS=-L/home/mturk/yt-x86_64/lib/
+ python2.7 setup.py build_ext -i
PNG_LOCATION: png.cfg: /home/mturk/yt-x86_64/include, /home/mturk/yt-x86_64/lib
FTYPE_LOCATION: freetype.cfg: /home/mturk/yt-x86_64/include, /home/mturk/yt-x86_64/lib
HDF5_LOCATION: hdf5.cfg: /home/mturk/yt-x86_64/include, /home/mturk/yt-x86_64/lib
running build_ext
running build_src
build_src
building py_modules sources
building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources
building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources
building extension "yt.frontends.ramses._ramses_reader" sources
building extension "yt.utilities.delaunay._delaunay" sources
building extension "yt.utilities.spatial.ckdtree" sources
building extension "yt.utilities.spatial._distance_wrap" sources
building extension "yt.utilities.data_point_utilities" sources
building extension "yt.utilities.hdf5_light_reader" sources
building extension "yt.utilities.amr_utils" sources
building extension "yt.utilities.libconfig_wrapper" sources
building extension "yt.visualization._MPL" sources
building data_files sources
build_src: building npy-pkg config files
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
running scons
+ cd yt/utilities/kdtree
+ make
Using Forthon ()
Forthon -F gfortran --compile_first fKD_source --no2underscores --with-numpy --fopt "-O3" fKD fKD_source.f90
make[1]: Entering directory `<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
make[1]: Nothing to be done for `dynamic'.
make[1]: Leaving directory `<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
IN FORTHON_BUILDER
running build
running build_ext
building 'fKDpy' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/fKDpymodule.c -o build/temp.linux-x86_64-2.7/fKDpymodule.o
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h:116:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:117:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:118:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:119:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:129:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:130:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:131:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:132:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:151:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:152:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:157:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:158:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h: In function ‘ForthonPackage_delvarattr’:
build/temp.linux-x86_64-2.7/Forthon.h:1701:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
build/temp.linux-x86_64-2.7/Forthon.h:1726:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_create_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:126:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_add_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:157:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_free_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:188:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_find_many_r_nearest’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:245:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘tree_nodedeclarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:678:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘kdtree2declarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:865:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:881:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:897:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘tree_setdeclarevars’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:1176:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1192:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1208:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1224:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1240:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1256:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1272:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1288:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1304:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1320:28: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c:1336:29: warning: assignment makes pointer from integer without a cast [enabled by default]
build/temp.linux-x86_64-2.7/fKDpymodule.c: At top level:
build/temp.linux-x86_64-2.7/Forthon.h:194:15: warning: ‘cputime’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:574:18: warning: ‘Forthon_getscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:580:18: warning: ‘Forthon_getarraydict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:910:12: warning: ‘Forthon_setscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:916:12: warning: ‘Forthon_setarraydict’ defined but not used [-Wunused-function]
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/Forthon.c -o build/temp.linux-x86_64-2.7/Forthon.o
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/fKDpymodule.o build/temp.linux-x86_64-2.7/Forthon.o build/temp.linux-x86_64-2.7/fKD.o build/temp.linux-x86_64-2.7/fKD_p.o build/temp.linux-x86_64-2.7/fKD_source.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/home/mturk/yt-x86_64/lib -lgfortran -lpython2.7 -o ./fKDpy.so
+ cd ../../..
[workspace] $ /bin/sh -xe /tmp/hudson1161262091141731239.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold -f /home/mturk/Research/data/JHK-DD0030/galaxy0030
Initializing TestRegistry
Initializing test_registry
Traceback (most recent call last):
  File "tests/runall.py", line 10, in <module>
    from yt.utilities.command_line import get_yt_version
  File "<http://localhost:8080/job/yt%20-%20galaxy0030/ws/yt/utilities/command_line.py",> line 28, in <module>
    from yt.startup_tasks import parser, subparsers
ImportError: cannot import name subparsers
Build step 'Execute shell' marked build as failure
Recording test results