[yt-svn] Build failed in Jenkins: yt - small data #182
matthewturk at gmail.com
matthewturk at gmail.com
Tue Dec 20 15:02:16 PST 2011
See <http://localhost:8080/job/yt%20-%20small%20data/182/changes>
Changes:
[Matthew Turk <matthewturk at gmail.com>] Changing leftover_args to unparsed_args and putting that in yt.mods.
[Matthew Turk <matthewturk at gmail.com>] Moving to include full set of args in sys.args. Note that this will keep
around the leftover args in yt.startup_tasks.leftover_args .
[Matthew Turk <matthewturk at gmail.com>] Fixing an issue that prevented importing yt in scripts.
[Matthew Turk <matthewturk at gmail.com>] Fixing up the way help is printed out. I believe that at this point we can
start integrating this with external scripts.
[Matthew Turk <matthewturk at gmail.com>] Merging from the mainline branch into config_reorg.
[Matthew Turk <matthewturk at gmail.com>] Adding "Name" to the static output min rep
[Matthew Turk <matthewturk at gmail.com>] No-op merge because of dangling changeset
[Matthew Turk <matthewturk at gmail.com>] Merge
[Matthew Turk <matthewturk at gmail.com>] Move around parallelism check and move --parallel into the parser
[Matthew Turk <matthewturk at gmail.com>] Adding missing import
[Matthew Turk <matthewturk at gmail.com>] Adding checks for dimensionality < 3 in FLASH files.
[Matthew Turk <matthewturk at gmail.com>] Removing print statement
[Matthew Turk <matthewturk at gmail.com>] Few more fixed, removing cmdln.py
[Matthew Turk <matthewturk at gmail.com>] Major refactoring of the command-line parser to use argparse instead of cmdln.
* Everything is now a subclass of YTCommand
* Adding new commands is clearer and easier
* Uses argparse, a python 2.7 library
* We can use --config something=another with it
* Removed all of the pasteboard
* Moved a bunch of the yt source handling into yt/funcs.py
* Removed pexpect.py
[Matthew Turk <matthewturk at gmail.com>] Beginning the consolidation of the --whatever argument parsing and moving a few
important items into a startup_items.py file. Command line utilities sort of
work but will not recognize or receive commands line --parallel.
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[...truncated 293 lines...]
yt/utilities/data_point_utilities.c:996:40: warning: unused variable ‘ize’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:996:35: warning: unused variable ‘iye’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:996:30: warning: unused variable ‘ixe’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:996:25: warning: unused variable ‘izs’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:996:20: warning: unused variable ‘iys’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:996:15: warning: unused variable ‘ixs’ [-Wunused-variable]
yt/utilities/data_point_utilities.c: In function ‘Py_FillBuffer’:
yt/utilities/data_point_utilities.c:1205:29: warning: unused variable ‘rk’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1205:25: warning: unused variable ‘rj’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1205:21: warning: unused variable ‘ri’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1200:40: warning: unused variable ‘ize’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1200:35: warning: unused variable ‘iye’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1200:30: warning: unused variable ‘ixe’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1200:25: warning: unused variable ‘izs’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1200:20: warning: unused variable ‘iys’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1200:15: warning: unused variable ‘ixs’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1197:23: warning: unused variable ‘direction’ [-Wunused-variable]
yt/utilities/data_point_utilities.c:1197:19: warning: unused variable ‘ll’ [-Wunused-variable]
yt/utilities/data_point_utilities.c: At top level:
yt/utilities/data_point_utilities.c:940:13: warning: ‘dcNothing’ defined but not used [-Wunused-function]
yt/utilities/data_point_utilities.c: In function ‘Py_FillBuffer’:
yt/utilities/data_point_utilities.c:1391:5: warning: ‘n_fields’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c:1395:25: warning: ‘g_data’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c:1396:25: warning: ‘c_data’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c:1335:16: warning: ‘y_loc’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c:1335:9: warning: ‘x_loc’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c: In function ‘Py_FillRegion’:
yt/utilities/data_point_utilities.c:1146:30: warning: ‘to_call’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c: In function ‘Py_CombineGrids’:
yt/utilities/data_point_utilities.c:268:9: warning: ‘grid_src_vals’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c:269:9: warning: ‘grid_dst_vals’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c: In function ‘Py_FindContours’:
yt/utilities/data_point_utilities.c:1468:38: warning: ‘status’ may be used uninitialized in this function [-Wuninitialized]
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/data_point_utilities.o -L. -lm -lpython2.7 -o yt/utilities/data_point_utilities.so
building 'yt.utilities.hdf5_light_reader' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-DH5_USE_16_API=True -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/hdf5_light_reader.c
yt/utilities/hdf5_light_reader.c: In function ‘Py_ReadHDF5DataSet’:
yt/utilities/hdf5_light_reader.c:168:12: warning: variable ‘type_size’ set but not used [-Wunused-but-set-variable]
yt/utilities/hdf5_light_reader.c: In function ‘get_array_from_nodename’:
yt/utilities/hdf5_light_reader.c:672:12: warning: variable ‘type_size’ set but not used [-Wunused-but-set-variable]
yt/utilities/hdf5_light_reader.c: In function ‘Py_ReadListOfDatasets’:
yt/utilities/hdf5_light_reader.c:550:7: warning: ‘nodelist’ may be used uninitialized in this function [-Wuninitialized]
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.o -L/home/mturk/yt-x86_64/lib -L. -lm -lhdf5 -lpython2.7 -o yt/utilities/hdf5_light_reader.so
building 'yt.utilities.amr_utils' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils
compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -Iyt/utilities/_amr_utils/ -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include -I/home/mturk/yt-x86_64/include/freetype2 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_amr_utils/healpix_pix2vec_nest.c
gcc: yt/utilities/_amr_utils/healpix_vec2pix_nest.c
yt/utilities/_amr_utils/healpix_vec2pix_nest.c: In function ‘vec2pix_nest’:
yt/utilities/_amr_utils/healpix_vec2pix_nest.c:56:30: warning: unused variable ‘pi’ [-Wunused-variable]
gcc: yt/utilities/_amr_utils/healpix_mk_xy2pix.c
gcc: yt/utilities/_amr_utils/union_find.c
gcc: yt/utilities/_amr_utils/healpix_mk_pix2xy.c
gcc: yt/utilities/_amr_utils/FixedInterpolator.c
yt/utilities/_amr_utils/FixedInterpolator.c: In function ‘offset_interpolate’:
yt/utilities/_amr_utils/FixedInterpolator.c:54:9: warning: unused variable ‘i’ [-Wunused-variable]
yt/utilities/_amr_utils/FixedInterpolator.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
gcc: yt/utilities/_amr_utils/kdtree.c
In file included from /home/mturk/yt-x86_64/include/python2.7/Python.h:8:0,
from yt/utilities/_amr_utils/kdtree.h:29,
from yt/utilities/_amr_utils/kdtree.c:32:
/home/mturk/yt-x86_64/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
/usr/include/features.h:214:0: note: this is the location of the previous definition
yt/utilities/_amr_utils/kdtree.c: In function ‘kd_nearest_i’:
yt/utilities/_amr_utils/kdtree.c:293:9: warning: variable ‘side’ set but not used [-Wunused-but-set-variable]
yt/utilities/_amr_utils/kdtree.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
gcc: yt/utilities/_amr_utils/healpix_pix2ang_nest.c
gcc: yt/utilities/_amr_utils/healpix_ang2pix_nest.c
gcc: yt/utilities/amr_utils.c
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_15PartitionedGrid_4get_isocontour_triangles’:
yt/utilities/amr_utils.c:24757:9: warning: implicit declaration of function ‘offset_fill’ [-Wimplicit-function-declaration]
yt/utilities/amr_utils.c: At top level:
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
yt/utilities/amr_utils.c:15967:12: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_CountTriangles’ defined but not used [-Wunused-function]
yt/utilities/amr_utils.c:48058:13: warning: ‘__pyx_f_2yt_9utilities_9amr_utils_read_art_vars’ defined but not used [-Wunused-function]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_42read_castro_particles’:
yt/utilities/amr_utils.c:49279:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_40read_art_root_vars’:
yt/utilities/amr_utils.c:47980:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_39read_art_tree’:
yt/utilities/amr_utils.c:47197:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47207:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47217:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47227:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47237:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47345:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47364:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47480:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47489:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47518:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47547:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47608:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47618:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:47629:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_38count_art_octs’:
yt/utilities/amr_utils.c:46654:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:46663:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:46696:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:46705:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:46753:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_37read_tiger_section’:
yt/utilities/amr_utils.c:46433:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_36read_and_seek’:
yt/utilities/amr_utils.c:46049:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c:46067:8: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
yt/utilities/amr_utils.c: In function ‘__pyx_f_2yt_9utilities_9amr_utils_15PartitionedGrid_integrate_ray’:
yt/utilities/amr_utils.c:23129:27: warning: ‘__pyx_v_exit_t’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_17AdaptiveRaySource_3integrate_brick’:
yt/utilities/amr_utils.c:38914:17: warning: ‘__pyx_v_dt’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_9calculate_fill_grids’:
yt/utilities/amr_utils.c:10907:30: warning: ‘__pyx_v_total’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_51kdtree_get_choices’:
yt/utilities/amr_utils.c:61857:21: warning: ‘__pyx_v_my_split’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c:61328:7: warning: ‘__pyx_v_best_dim’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_1RecurseOctreeByLevels’:
yt/utilities/amr_utils.c:5585:18: warning: ‘__pyx_v_cz’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c:73267:34: warning: ‘__pyx_v_k’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c:5113:26: note: ‘__pyx_v_k’ was declared here
yt/utilities/amr_utils.c: In function ‘__pyx_pf_2yt_9utilities_9amr_utils_8find_grids_in_inclined_box’:
yt/utilities/amr_utils.c:9567:77: warning: ‘*((void *)&__pyx_v_a_vec+72)’ may be used uninitialized in this function [-Wuninitialized]
yt/utilities/amr_utils.c:9728:28: note: ‘*((void *)&__pyx_v_a_vec+72)’ was declared here
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/amr_utils.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/union_find.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/_amr_utils/healpix_mk_pix2xy.o -L/home/mturk/yt-x86_64/lib -L/home/mturk/yt-x86_64/lib -L. -lm -lpng -lfreetype -lpython2.7 -o yt/utilities/amr_utils.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/_libconfig/grammar.c
grammar.y:50:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
grammar.y:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_override’:
yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_restore’:
yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
yt/utilities/_libconfig/libconfig.c: In function ‘__config_read’:
yt/utilities/_libconfig/libconfig.c:555:19: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable]
gcc: yt/utilities/_libconfig/strbuf.c
gcc: yt/utilities/_libconfig/scanner.c
gcc: yt/utilities/_libconfig/scanctx.c
gcc: yt/utilities/libconfig_wrapper.c
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_2read_file’:
yt/utilities/libconfig_wrapper.c:760:24: warning: assignment discards ‘const’ qualifier from pointer target type [enabled by default]
yt/utilities/libconfig_wrapper.c:769:24: warning: assignment discards ‘const’ qualifier from pointer target type [enabled by default]
yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_5get_setting’:
yt/utilities/libconfig_wrapper.c:1259:23: warning: assignment discards ‘const’ qualifier from pointer target type [enabled by default]
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o -L. -lpython2.7 -o yt/utilities/libconfig_wrapper.so
building 'yt.visualization._MPL' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/visualization
compile options: '-I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c'
gcc: yt/visualization/_MPL.c
yt/visualization/_MPL.c: In function ‘Py_Pixelize’:
yt/visualization/_MPL.c:121:7: warning: unused variable ‘ndy’ [-Wunused-variable]
yt/visualization/_MPL.c:120:7: warning: unused variable ‘ndx’ [-Wunused-variable]
yt/visualization/_MPL.c:119:7: warning: unused variable ‘ny’ [-Wunused-variable]
yt/visualization/_MPL.c: In function ‘Py_CPixelize’:
yt/visualization/_MPL.c:350:15: warning: unused variable ‘radius’ [-Wunused-variable]
yt/visualization/_MPL.c:335:60: warning: unused variable ‘dsp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:54: warning: unused variable ‘dzsp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:48: warning: unused variable ‘dysp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:42: warning: unused variable ‘dxsp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:36: warning: unused variable ‘pysp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:30: warning: unused variable ‘pxsp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:25: warning: unused variable ‘zsp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:20: warning: unused variable ‘ysp’ [-Wunused-variable]
yt/visualization/_MPL.c:335:15: warning: unused variable ‘xsp’ [-Wunused-variable]
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -L. -lm -lpython2.7 -o yt/visualization/_MPL.so
running scons
+ cd yt/utilities/kdtree
+ make
Using Forthon ()
Forthon -F gfortran --compile_first fKD_source --no2underscores --with-numpy --fopt "-O3" fKD fKD_source.f90
make[1]: Entering directory `<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.wrappergenerator import wrappergenerator_main;wrappergenerator_main()" \
--realsize 8 \
--f90 -t linux2 --underscoring --no2underscores -F gfortran \
fKD ../../fKD.v
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c fKD_p.F90
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -O3 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c ../../fKD_source.f90
gfortran -fPIC -DFPSIZE=8 -fdefault-real-8 -fdefault-double-8 -DISZ=8 -fdefault-integer-8 -fimplicit-none -fno-second-underscore -O3 -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -c ../../fKD.f90
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.preprocess import main;main()" --f90 -tlinux2 --underscoring --no2underscores -F gfortran /home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon/Forthon.h Forthon.h
/home/mturk/yt-x86_64/bin/python2.7 -c "from Forthon.preprocess import main;main()" --f90 -tlinux2 --underscoring --no2underscores -F gfortran /home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon/Forthon.c Forthon.c
make[1]: Leaving directory `<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/kdtree/build/temp.linux-x86_64-2.7'>
IN FORTHON_BUILDER
running build
running build_ext
building 'fKDpy' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/fKDpymodule.c -o build/temp.linux-x86_64-2.7/fKDpymodule.o
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h:116:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:117:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:118:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:119:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:129:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:130:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:131:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:132:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:151:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:152:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:157:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
build/temp.linux-x86_64-2.7/Forthon.h:158:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
In file included from build/temp.linux-x86_64-2.7/fKDpymodule.c:1:0:
build/temp.linux-x86_64-2.7/Forthon.h: In function ‘ForthonPackage_delvarattr’:
build/temp.linux-x86_64-2.7/Forthon.h:1701:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
build/temp.linux-x86_64-2.7/Forthon.h:1726:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_create_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:126:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_add_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:157:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_free_tree’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:188:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: In function ‘fKD_find_many_r_nearest’:
build/temp.linux-x86_64-2.7/fKDpymodule.c:245:9: warning: variable ‘argno’ set but not used [-Wunused-but-set-variable]
build/temp.linux-x86_64-2.7/fKDpymodule.c: At top level:
build/temp.linux-x86_64-2.7/Forthon.h:194:15: warning: ‘cputime’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:574:18: warning: ‘Forthon_getscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:580:18: warning: ‘Forthon_getarraydict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:910:12: warning: ‘Forthon_setscalardict’ defined but not used [-Wunused-function]
build/temp.linux-x86_64-2.7/Forthon.h:916:12: warning: ‘Forthon_setarraydict’ defined but not used [-Wunused-function]
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/Forthon -I/home/mturk/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/home/mturk/yt-x86_64/include/python2.7 -c build/temp.linux-x86_64-2.7/Forthon.c -o build/temp.linux-x86_64-2.7/Forthon.o
gcc -pthread -shared -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ -L/home/mturk/yt-x86_64/lib64/ -L/home/mturk/yt-x86_64/lib/ build/temp.linux-x86_64-2.7/fKDpymodule.o build/temp.linux-x86_64-2.7/Forthon.o build/temp.linux-x86_64-2.7/fKD.o build/temp.linux-x86_64-2.7/fKD_p.o build/temp.linux-x86_64-2.7/fKD_source.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/home/mturk/yt-x86_64/lib -lgfortran -lpython2.7 -o ./fKDpy.so
+ cd ../../..
[workspace] $ /bin/sh -xe /tmp/hudson4569214668815778588.sh
+ export PYTHONPATH=.
+ python2.7 tests/runall.py -c gold
Traceback (most recent call last):
File "tests/runall.py", line 6, in <module>
from yt.utilities.answer_testing.api import \
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/__init__.py",> line 26, in <module>
import runner, output_tests
File "<http://localhost:8080/job/yt%20-%20small%20data/ws/yt/utilities/answer_testing/runner.py",> line 30, in <module>
import yt.utilities.cmdln as cmdln
ImportError: No module named cmdln
Build step 'Execute shell' marked build as failure
Recording test results
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