[Yt-svn] yt: 2 new changesets
hg at spacepope.org
hg at spacepope.org
Thu Jul 29 17:20:01 PDT 2010
hg Repository: yt
details: yt/rev/828a5535e899
changeset: 1896:828a5535e899
user: Matthew Turk <matthewturk at gmail.com>
date:
Thu Jul 29 17:17:46 2010 -0700
description:
Fixed the bug in volume rendering where iv_dir[i] was always the inverse of
iv_dir[0].
hg Repository: yt
details: yt/rev/f0960f4f6bed
changeset: 1897:f0960f4f6bed
user: Matthew Turk <matthewturk at gmail.com>
date:
Thu Jul 29 17:18:51 2010 -0700
description:
Merging with tip
diffstat:
yt/_amr_utils/VolumeIntegrator.pyx | 2 +-
yt/amr_utils.c | 7444 ++++++++++++++++++++++++++---------------
yt/raven/Callbacks.py | 75 +
3 files changed, 4737 insertions(+), 2784 deletions(-)
diffs (truncated from 13144 to 300 lines):
diff -r c9dea0de23c6 -r f0960f4f6bed yt/_amr_utils/VolumeIntegrator.pyx
--- a/yt/_amr_utils/VolumeIntegrator.pyx Wed Jul 28 20:38:40 2010 -0700
+++ b/yt/_amr_utils/VolumeIntegrator.pyx Thu Jul 29 17:18:51 2010 -0700
@@ -415,7 +415,7 @@
step[i] = 1
x = (i+1) % 3
y = (i+2) % 3
- iv_dir[i] = 1.0/v_dir[0]
+ iv_dir[i] = 1.0/v_dir[i]
tl = (self.left_edge[i] - v_pos[i])*iv_dir[i]
temp_x = (v_pos[x] + tl*v_dir[x])
temp_y = (v_pos[y] + tl*v_dir[y])
diff -r c9dea0de23c6 -r f0960f4f6bed yt/amr_utils.c
--- a/yt/amr_utils.c Wed Jul 28 20:38:40 2010 -0700
+++ b/yt/amr_utils.c Thu Jul 29 17:18:51 2010 -0700
@@ -1,18 +1,39 @@
-/* Generated by Cython 0.12.1 on Mon Jul 19 22:35:35 2010 */
+/* Generated by Cython 0.13.beta0 on Thu Jul 29 17:17:22 2010 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
-#include "structmember.h"
#ifndef Py_PYTHON_H
#error Python headers needed to compile C extensions, please install development version of Python.
#else
+#include <stddef.h> /* For offsetof */
+#ifndef offsetof
+#define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
+#endif
+
+#if !defined(WIN32) && !defined(MS_WINDOWS)
+ #ifndef __stdcall
+ #define __stdcall
+ #endif
+ #ifndef __cdecl
+ #define __cdecl
+ #endif
+ #ifndef __fastcall
+ #define __fastcall
+ #endif
+#endif
+
+#ifndef DL_IMPORT
+ #define DL_IMPORT(t) t
+#endif
+#ifndef DL_EXPORT
+ #define DL_EXPORT(t) t
+#endif
+
#ifndef PY_LONG_LONG
#define PY_LONG_LONG LONG_LONG
#endif
-#ifndef DL_EXPORT
- #define DL_EXPORT(t) t
-#endif
+
#if PY_VERSION_HEX < 0x02040000
#define METH_COEXIST 0
#define PyDict_CheckExact(op) (Py_TYPE(op) == &PyDict_Type)
@@ -82,11 +103,35 @@
#if PY_MAJOR_VERSION >= 3
#define PyBaseString_Type PyUnicode_Type
+ #define PyStringObject PyUnicodeObject
#define PyString_Type PyUnicode_Type
+ #define PyString_Check PyUnicode_Check
#define PyString_CheckExact PyUnicode_CheckExact
-#else
+#endif
+
+#if PY_VERSION_HEX < 0x02060000
+ #define PyBytesObject PyStringObject
#define PyBytes_Type PyString_Type
+ #define PyBytes_Check PyString_Check
#define PyBytes_CheckExact PyString_CheckExact
+ #define PyBytes_FromString PyString_FromString
+ #define PyBytes_FromStringAndSize PyString_FromStringAndSize
+ #define PyBytes_FromFormat PyString_FromFormat
+ #define PyBytes_DecodeEscape PyString_DecodeEscape
+ #define PyBytes_AsString PyString_AsString
+ #define PyBytes_AsStringAndSize PyString_AsStringAndSize
+ #define PyBytes_Size PyString_Size
+ #define PyBytes_AS_STRING PyString_AS_STRING
+ #define PyBytes_GET_SIZE PyString_GET_SIZE
+ #define PyBytes_Repr PyString_Repr
+ #define PyBytes_Concat PyString_Concat
+ #define PyBytes_ConcatAndDel PyString_ConcatAndDel
+ #define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type)
+ #define PyFrozenSet_Check(obj) PyObject_TypeCheck(obj, &PyFrozenSet_Type)
+#endif
+
+#ifndef PySet_CheckExact
+# define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
#endif
#if PY_MAJOR_VERSION >= 3
@@ -103,30 +148,18 @@
#define PyInt_AsSsize_t PyLong_AsSsize_t
#define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
#define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
+#endif
+
+#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
#define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
#else
#define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
#define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
-
#endif
#if PY_MAJOR_VERSION >= 3
- #define PyMethod_New(func, self, klass) PyInstanceMethod_New(func)
-#endif
-
-#if !defined(WIN32) && !defined(MS_WINDOWS)
- #ifndef __stdcall
- #define __stdcall
- #endif
- #ifndef __cdecl
- #define __cdecl
- #endif
- #ifndef __fastcall
- #define __fastcall
- #endif
-#else
- #define _USE_MATH_DEFINES
+ #define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
#endif
#if PY_VERSION_HEX < 0x02050000
@@ -146,115 +179,66 @@
#define __Pyx_NAMESTR(n) (n)
#define __Pyx_DOCSTR(n) (n)
#endif
+
#ifdef __cplusplus
#define __PYX_EXTERN_C extern "C"
#else
#define __PYX_EXTERN_C extern
#endif
+
+#if defined(WIN32) || defined(MS_WINDOWS)
+#define _USE_MATH_DEFINES
+#endif
#include <math.h>
#define __PYX_HAVE_API__yt__amr_utils
+#include "stdio.h"
#include "stdlib.h"
-#include "stdio.h"
#include "numpy/arrayobject.h"
#include "numpy/ufuncobject.h"
#include "math.h"
#include "FixedInterpolator.h"
#include "png.h"
+/* inline attribute */
#ifndef CYTHON_INLINE
#if defined(__GNUC__)
#define CYTHON_INLINE __inline__
#elif defined(_MSC_VER)
#define CYTHON_INLINE __inline
+ #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
+ #define CYTHON_INLINE inline
#else
#define CYTHON_INLINE
#endif
#endif
+/* unused attribute */
+#ifndef CYTHON_UNUSED
+# if defined(__GNUC__)
+# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
+# define CYTHON_UNUSED __attribute__ ((__unused__))
+# else
+# define CYTHON_UNUSED
+# endif
+# elif defined(__ICC) || defined(__INTEL_COMPILER)
+# define CYTHON_UNUSED __attribute__ ((__unused__))
+# else
+# define CYTHON_UNUSED
+# endif
+#endif
+
typedef struct {PyObject **p; char *s; const long n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/
/* Type Conversion Predeclarations */
-#if PY_MAJOR_VERSION < 3
-#define __Pyx_PyBytes_FromString PyString_FromString
-#define __Pyx_PyBytes_FromStringAndSize PyString_FromStringAndSize
-#define __Pyx_PyBytes_AsString PyString_AsString
-#else
-#define __Pyx_PyBytes_FromString PyBytes_FromString
-#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
-#define __Pyx_PyBytes_AsString PyBytes_AsString
-#endif
-
-#define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((char*)s)
-#define __Pyx_PyBytes_AsUString(s) ((unsigned char*) __Pyx_PyBytes_AsString(s))
+#define __Pyx_PyBytes_FromUString(s) PyBytes_FromString((char*)s)
+#define __Pyx_PyBytes_AsUString(s) ((unsigned char*) PyBytes_AsString(s))
#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False))
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x);
-#if !defined(T_PYSSIZET)
-#if PY_VERSION_HEX < 0x02050000
-#define T_PYSSIZET T_INT
-#elif !defined(T_LONGLONG)
-#define T_PYSSIZET \
- ((sizeof(Py_ssize_t) == sizeof(int)) ? T_INT : \
- ((sizeof(Py_ssize_t) == sizeof(long)) ? T_LONG : -1))
-#else
-#define T_PYSSIZET \
- ((sizeof(Py_ssize_t) == sizeof(int)) ? T_INT : \
- ((sizeof(Py_ssize_t) == sizeof(long)) ? T_LONG : \
- ((sizeof(Py_ssize_t) == sizeof(PY_LONG_LONG)) ? T_LONGLONG : -1)))
-#endif
-#endif
-
-
-#if !defined(T_ULONGLONG)
-#define __Pyx_T_UNSIGNED_INT(x) \
- ((sizeof(x) == sizeof(unsigned char)) ? T_UBYTE : \
- ((sizeof(x) == sizeof(unsigned short)) ? T_USHORT : \
- ((sizeof(x) == sizeof(unsigned int)) ? T_UINT : \
- ((sizeof(x) == sizeof(unsigned long)) ? T_ULONG : -1))))
-#else
-#define __Pyx_T_UNSIGNED_INT(x) \
- ((sizeof(x) == sizeof(unsigned char)) ? T_UBYTE : \
- ((sizeof(x) == sizeof(unsigned short)) ? T_USHORT : \
- ((sizeof(x) == sizeof(unsigned int)) ? T_UINT : \
- ((sizeof(x) == sizeof(unsigned long)) ? T_ULONG : \
- ((sizeof(x) == sizeof(unsigned PY_LONG_LONG)) ? T_ULONGLONG : -1)))))
-#endif
-#if !defined(T_LONGLONG)
-#define __Pyx_T_SIGNED_INT(x) \
- ((sizeof(x) == sizeof(char)) ? T_BYTE : \
- ((sizeof(x) == sizeof(short)) ? T_SHORT : \
- ((sizeof(x) == sizeof(int)) ? T_INT : \
- ((sizeof(x) == sizeof(long)) ? T_LONG : -1))))
-#else
-#define __Pyx_T_SIGNED_INT(x) \
- ((sizeof(x) == sizeof(char)) ? T_BYTE : \
- ((sizeof(x) == sizeof(short)) ? T_SHORT : \
- ((sizeof(x) == sizeof(int)) ? T_INT : \
- ((sizeof(x) == sizeof(long)) ? T_LONG : \
- ((sizeof(x) == sizeof(PY_LONG_LONG)) ? T_LONGLONG : -1)))))
-#endif
-
-#define __Pyx_T_FLOATING(x) \
- ((sizeof(x) == sizeof(float)) ? T_FLOAT : \
- ((sizeof(x) == sizeof(double)) ? T_DOUBLE : -1))
-
-#if !defined(T_SIZET)
-#if !defined(T_ULONGLONG)
-#define T_SIZET \
- ((sizeof(size_t) == sizeof(unsigned int)) ? T_UINT : \
- ((sizeof(size_t) == sizeof(unsigned long)) ? T_ULONG : -1))
-#else
-#define T_SIZET \
- ((sizeof(size_t) == sizeof(unsigned int)) ? T_UINT : \
- ((sizeof(size_t) == sizeof(unsigned long)) ? T_ULONG : \
- ((sizeof(size_t) == sizeof(unsigned PY_LONG_LONG)) ? T_ULONGLONG : -1)))
-#endif
-#endif
-
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject*);
@@ -264,7 +248,7 @@
#ifdef __GNUC__
/* Test for GCC > 2.95 */
-#if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))
+#if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))
#define likely(x) __builtin_expect(!!(x), 1)
#define unlikely(x) __builtin_expect(!!(x), 0)
#else /* __GNUC__ > 2 ... */
@@ -284,7 +268,6 @@
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;
-static const char **__pyx_f;
#if !defined(CYTHON_CCOMPLEX)
@@ -310,6 +293,21 @@
#define _Complex_I 1.0fj
#endif
+static const char *__pyx_f[] = {
+ "DepthFirstOctree.pyx",
+ "PointsInVolume.pyx",
+ "VolumeIntegrator.pyx",
+ "Interpolators.pyx",
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