[Yt-svn] yt: 5 new changesets
hg at spacepope.org
hg at spacepope.org
Fri Jul 2 14:29:12 PDT 2010
hg Repository: yt
details: yt/rev/a8a5cb1103c2
changeset: 1860:a8a5cb1103c2
user: sskory
date:
Wed Jun 30 15:36:54 2010 -0700
description:
[svn r1787] Apparently the max_dens dict needs to be updated like this now.
hg Repository: yt
details: yt/rev/4b0f6529f38a
changeset: 1861:4b0f6529f38a
user: sskory
date:
Fri Jul 02 09:28:17 2010 -0700
description:
[svn r1788] I forgot to change HaloProfiler to halo_profiler in the merger tree.
hg Repository: yt
details: yt/rev/a5779138ae58
changeset: 1862:a5779138ae58
user: mturk
date:
Fri Jul 02 14:22:25 2010 -0700
description:
[svn r1789] Backporting from hg:
* Fixes to opengl viewer of grids
* Importing the enzo test runner
* Jeff's fixes for Orion's time
* Jeff's time annotation
* Mag-field callback from Jeff
hg Repository: yt
details: yt/rev/e393c7090773
changeset: 1863:e393c7090773
user: Matthew Turk <matthewturk at gmail.com>
date:
Fri Jul 02 14:28:44 2010 -0700
description:
Merging from trunk
hg Repository: yt
details: yt/rev/647ff179642e
changeset: 1864:647ff179642e
user: Matthew Turk <matthewturk at gmail.com>
date:
Fri Jul 02 14:29:05 2010 -0700
description:
Merging
diffstat:
.hgignore | 3 +
scripts/fbranch | 5 +-
scripts/fbury | 5 +-
scripts/fdigup | 5 +-
scripts/fido | 5 +-
scripts/fimport | 5 +-
yt/amr_utils.c | 2242 +++++++++++-----------
yt/arraytypes.py | 11 +
yt/command_line.py | 10 +-
yt/extensions/enzo_test/DataProviders.py | 69 -
yt/extensions/enzo_test/ProblemSetup.py | 92 -
yt/extensions/enzo_test/ProblemVerification.py | 78 -
yt/extensions/enzo_test/README | 275 ++
yt/extensions/enzo_test/SimulationTests.py | 70 -
yt/extensions/enzo_test/__init__.py | 29 -
yt/extensions/enzo_test/halo_tests.py | 48 +
yt/extensions/enzo_test/hydro_tests.py | 77 +
yt/extensions/enzo_test/output_tests.py | 117 +
yt/extensions/enzo_test/particle_tests.py | 59 +
yt/extensions/enzo_test/run_tests.py | 13 +
yt/extensions/enzo_test/runner.py | 112 +
yt/extensions/kdtree/fKD.f90 | 2 +-
yt/extensions/light_ray.py | 372 +++
yt/extensions/merger_tree.py | 2 +-
yt/extensions/opengl_image_viewer.py | 4 +-
yt/extensions/opengl_widgets/calculateRay.vertex.glsl | 63 +
yt/extensions/opengl_widgets/colormap.fragment.glsl | 12 +
yt/extensions/opengl_widgets/framebuffer.vertex.glsl | 12 +
yt/extensions/opengl_widgets/mip.fragment.glsl | 135 +
yt/extensions/opengl_widgets/mip_viewer.py | 450 ++++
yt/extensions/opengl_widgets/rendering_contexts.py | 88 +
yt/extensions/volume_rendering/multi_texture.py | 302 +++
yt/fido/share_data.py | 83 +
yt/lagos/BaseDataTypes.py | 1 -
yt/lagos/Clump.py | 290 --
yt/lagos/HaloFinding.py | 2 +
yt/lagos/OutputTypes.py | 4 +-
yt/raven/Callbacks.py | 20 +
yt/raven/plot_collection.py | 2 +-
yt/reason/plot_editors.py | 10 +-
yt/reason/reason_v2.py | 7 +-
yt/reason/tvtk_interface.py | 26 +-
42 files changed, 3444 insertions(+), 1773 deletions(-)
diffs (truncated from 13377 to 300 lines):
diff -r 92ffd5fdd460 -r 647ff179642e .hgignore
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/.hgignore Fri Jul 02 14:29:05 2010 -0700
@@ -0,0 +1,3 @@
+syntax: glob
+*.pyc
+.*.swp
diff -r 92ffd5fdd460 -r 647ff179642e scripts/fbranch
--- a/scripts/fbranch Wed Jun 30 08:43:55 2010 -0700
+++ b/scripts/fbranch Fri Jul 02 14:29:05 2010 -0700
@@ -1,1 +1,4 @@
-basic.py
\ No newline at end of file
+#!python2.5
+import yt.fido
+
+yt.fido.runAction()
diff -r 92ffd5fdd460 -r 647ff179642e scripts/fbury
--- a/scripts/fbury Wed Jun 30 08:43:55 2010 -0700
+++ b/scripts/fbury Fri Jul 02 14:29:05 2010 -0700
@@ -1,1 +1,4 @@
-basic.py
\ No newline at end of file
+#!python2.5
+import yt.fido
+
+yt.fido.runAction()
diff -r 92ffd5fdd460 -r 647ff179642e scripts/fdigup
--- a/scripts/fdigup Wed Jun 30 08:43:55 2010 -0700
+++ b/scripts/fdigup Fri Jul 02 14:29:05 2010 -0700
@@ -1,1 +1,4 @@
-basic.py
\ No newline at end of file
+#!python2.5
+import yt.fido
+
+yt.fido.runAction()
diff -r 92ffd5fdd460 -r 647ff179642e scripts/fido
--- a/scripts/fido Wed Jun 30 08:43:55 2010 -0700
+++ b/scripts/fido Fri Jul 02 14:29:05 2010 -0700
@@ -1,1 +1,4 @@
-basic.py
\ No newline at end of file
+#!python2.5
+from yt.mods import *
+
+fido.runAction()
diff -r 92ffd5fdd460 -r 647ff179642e scripts/fimport
--- a/scripts/fimport Wed Jun 30 08:43:55 2010 -0700
+++ b/scripts/fimport Fri Jul 02 14:29:05 2010 -0700
@@ -1,1 +1,4 @@
-basic.py
\ No newline at end of file
+#!python2.5
+from yt.mods import *
+
+fido.runAction()
diff -r 92ffd5fdd460 -r 647ff179642e yt/amr_utils.c
--- a/yt/amr_utils.c Wed Jun 30 08:43:55 2010 -0700
+++ b/yt/amr_utils.c Fri Jul 02 14:29:05 2010 -0700
@@ -1,4 +1,4 @@
-/* Generated by Cython 0.12.1 on Thu Jun 24 08:38:56 2010 */
+/* Generated by Cython 0.12.1 on Thu Jun 24 08:40:25 2010 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
@@ -378,7 +378,7 @@
typedef npy_cdouble __pyx_t_5numpy_complex_t;
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":76
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":76
* cdef class VectorPlane
*
* cdef struct FieldInterpolationTable: # <<<<<<<<<<<<<<
@@ -398,7 +398,7 @@
int pass_through;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":89
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":89
* int pass_through
*
* cdef void FIT_initialize_table(FieldInterpolationTable *fit, int nbins, # <<<<<<<<<<<<<<
@@ -413,7 +413,7 @@
int pass_through;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/QuadTree.pyx":39
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/QuadTree.pyx":39
* void *alloca(int)
*
* cdef struct QuadTreeNode: # <<<<<<<<<<<<<<
@@ -430,7 +430,7 @@
struct __pyx_t_2yt_9amr_utils_QuadTreeNode *children[2][2];
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":118
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":118
* return (bv + dd*dy*fit.idbin)
*
* cdef class TransferFunctionProxy: # <<<<<<<<<<<<<<
@@ -451,7 +451,7 @@
PyObject *my_field_tables;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":36
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":36
* self.refined_pos = 0
*
* cdef class OctreeGrid: # <<<<<<<<<<<<<<
@@ -469,7 +469,7 @@
int level;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":53
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":53
* self.level = level
*
* cdef class OctreeGridList: # <<<<<<<<<<<<<<
@@ -482,7 +482,7 @@
PyObject *grids;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":569
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":569
* return 1
*
* cdef class ProtoPrism: # <<<<<<<<<<<<<<
@@ -501,7 +501,7 @@
int parent_grid_id;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":30
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":30
* cimport cython
*
* cdef class position: # <<<<<<<<<<<<<<
@@ -515,7 +515,7 @@
int refined_pos;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":537
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":537
* tf.eval_transfer(dt, self.dvs, rgba, grad)
*
* cdef class GridFace: # <<<<<<<<<<<<<<
@@ -532,7 +532,7 @@
__pyx_t_5numpy_float64_t right_edge[3];
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/QuadTree.pyx":99
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/QuadTree.pyx":99
* free(node)
*
* cdef class QuadTree: # <<<<<<<<<<<<<<
@@ -549,7 +549,7 @@
__pyx_t_5numpy_int64_t top_grid_dims[2];
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":74
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":74
* np.float64_t *data, np.float64_t *grad)
*
* cdef class VectorPlane # <<<<<<<<<<<<<<
@@ -581,7 +581,7 @@
__pyx_t_5numpy_float64_t *y_vec;
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":299
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":299
* tv[offset + k] = fv[k]
*
* cdef class PartitionedGrid: # <<<<<<<<<<<<<<
@@ -607,7 +607,7 @@
};
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":537
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":537
* tf.eval_transfer(dt, self.dvs, rgba, grad)
*
* cdef class GridFace: # <<<<<<<<<<<<<<
@@ -621,7 +621,7 @@
static struct __pyx_vtabstruct_2yt_9amr_utils_GridFace *__pyx_vtabptr_2yt_9amr_utils_GridFace;
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":118
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":118
* return (bv + dd*dy*fit.idbin)
*
* cdef class TransferFunctionProxy: # <<<<<<<<<<<<<<
@@ -635,7 +635,7 @@
static struct __pyx_vtabstruct_2yt_9amr_utils_TransferFunctionProxy *__pyx_vtabptr_2yt_9amr_utils_TransferFunctionProxy;
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":569
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":569
* return 1
*
* cdef class ProtoPrism: # <<<<<<<<<<<<<<
@@ -649,7 +649,7 @@
static struct __pyx_vtabstruct_2yt_9amr_utils_ProtoPrism *__pyx_vtabptr_2yt_9amr_utils_ProtoPrism;
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/QuadTree.pyx":99
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/QuadTree.pyx":99
* free(node)
*
* cdef class QuadTree: # <<<<<<<<<<<<<<
@@ -666,7 +666,7 @@
static struct __pyx_vtabstruct_2yt_9amr_utils_QuadTree *__pyx_vtabptr_2yt_9amr_utils_QuadTree;
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":222
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":222
* #rgba[i+3] += trgba[i] * (1.0 - rgba[i+3])*dt*trgba[i+3]
*
* cdef class VectorPlane: # <<<<<<<<<<<<<<
@@ -682,7 +682,7 @@
static struct __pyx_vtabstruct_2yt_9amr_utils_VectorPlane *__pyx_vtabptr_2yt_9amr_utils_VectorPlane;
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/VolumeIntegrator.pyx":299
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/VolumeIntegrator.pyx":299
* tv[offset + k] = fv[k]
*
* cdef class PartitionedGrid: # <<<<<<<<<<<<<<
@@ -1748,7 +1748,7 @@
static PyObject *__pyx_int_neg_1;
static PyObject *__pyx_int_15;
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":32
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":32
* cdef class position:
* cdef public int output_pos, refined_pos
* def __cinit__(self): # <<<<<<<<<<<<<<
@@ -1764,7 +1764,7 @@
__Pyx_RaiseArgtupleInvalid("__cinit__", 1, 0, 0, PyTuple_GET_SIZE(__pyx_args)); return -1;}
if (unlikely(__pyx_kwds) && unlikely(PyDict_Size(__pyx_kwds) > 0) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__cinit__", 0))) return -1;
- /* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":33
+ /* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":33
* cdef public int output_pos, refined_pos
* def __cinit__(self):
* self.output_pos = 0 # <<<<<<<<<<<<<<
@@ -1773,7 +1773,7 @@
*/
((struct __pyx_obj_2yt_9amr_utils_position *)__pyx_v_self)->output_pos = 0;
- /* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":34
+ /* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":34
* def __cinit__(self):
* self.output_pos = 0
* self.refined_pos = 0 # <<<<<<<<<<<<<<
@@ -1787,7 +1787,7 @@
return __pyx_r;
}
-/* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":39
+/* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":39
* cdef public object child_indices, fields, left_edges, dimensions, dx
* cdef public int level
* def __cinit__(self, # <<<<<<<<<<<<<<
@@ -1947,7 +1947,7 @@
__pyx_bstride_0_dx = __pyx_bstruct_dx.strides[0];
__pyx_bshape_0_dx = __pyx_bstruct_dx.shape[0];
- /* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":46
+ /* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":46
* np.ndarray[np.float64_t, ndim=1] dx,
* int level):
* self.child_indices = child_indices # <<<<<<<<<<<<<<
@@ -1960,7 +1960,7 @@
__Pyx_DECREF(((struct __pyx_obj_2yt_9amr_utils_OctreeGrid *)__pyx_v_self)->child_indices);
((struct __pyx_obj_2yt_9amr_utils_OctreeGrid *)__pyx_v_self)->child_indices = ((PyObject *)__pyx_v_child_indices);
- /* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":47
+ /* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":47
* int level):
* self.child_indices = child_indices
* self.fields = fields # <<<<<<<<<<<<<<
@@ -1973,7 +1973,7 @@
__Pyx_DECREF(((struct __pyx_obj_2yt_9amr_utils_OctreeGrid *)__pyx_v_self)->fields);
((struct __pyx_obj_2yt_9amr_utils_OctreeGrid *)__pyx_v_self)->fields = ((PyObject *)__pyx_v_fields);
- /* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":48
+ /* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":48
* self.child_indices = child_indices
* self.fields = fields
* self.left_edges = left_edges # <<<<<<<<<<<<<<
@@ -1986,7 +1986,7 @@
__Pyx_DECREF(((struct __pyx_obj_2yt_9amr_utils_OctreeGrid *)__pyx_v_self)->left_edges);
((struct __pyx_obj_2yt_9amr_utils_OctreeGrid *)__pyx_v_self)->left_edges = ((PyObject *)__pyx_v_left_edges);
- /* "/Users/matthewturk/Development/yt/trunk/yt/_amr_utils/DepthFirstOctree.pyx":49
+ /* "/Users/matthewturk/yt/yt/yt/_amr_utils/DepthFirstOctree.pyx":49
* self.fields = fields
* self.left_edges = left_edges
* self.dimensions = dimensions # <<<<<<<<<<<<<<
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