[Yt-svn] yt: 27 new changesets

hg at spacepope.org hg at spacepope.org
Mon Aug 30 10:05:10 PDT 2010


hg Repository: yt
details:   yt/rev/8631b8c53cbd
changeset: 3324:8631b8c53cbd
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:55:22 2010 -0700
description:
Finished, moving into main

hg Repository: yt
details:   yt/rev/deb1219e78e8
changeset: 3325:deb1219e78e8
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:56:03 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/872b737e000d
changeset: 3326:872b737e000d
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:56:10 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/c1f4c2652dfa
changeset: 3327:c1f4c2652dfa
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:56:15 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/8a462ff16f90
changeset: 3328:8a462ff16f90
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:56:22 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/0ae23df4c75e
changeset: 3329:0ae23df4c75e
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:56:28 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/d7d6a4bc6648
changeset: 3330:d7d6a4bc6648
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:56:41 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/ba573a42c69c
changeset: 3331:ba573a42c69c
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:56:46 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/e3c55655e3bf
changeset: 3332:e3c55655e3bf
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:57:36 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/644d81878a96
changeset: 3333:644d81878a96
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:57:40 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/33dd0836da9e
changeset: 3334:33dd0836da9e
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:58:47 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/f0fd92687c31
changeset: 3335:f0fd92687c31
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:58:53 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/a57a3ec829a9
changeset: 3336:a57a3ec829a9
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:59:01 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/c6370f521672
changeset: 3337:c6370f521672
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:59:23 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/b0ef9357ecfc
changeset: 3338:b0ef9357ecfc
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:59:29 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/f4612e6b3c1e
changeset: 3339:f4612e6b3c1e
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:59:35 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/3fb47750b63d
changeset: 3340:3fb47750b63d
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:59:39 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/f76d9b8342f9
changeset: 3341:f76d9b8342f9
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:59:50 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/d560bb02d2af
changeset: 3342:d560bb02d2af
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 09:59:54 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/1bec29f8a2a6
changeset: 3343:1bec29f8a2a6
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:00:02 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/041f1470ecf2
changeset: 3344:041f1470ecf2
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:00:34 2010 -0700
description:
trunk is a historical artifact from svn.  yt stable is now going to be developed in the branch 'stable'.

hg Repository: yt
details:   yt/rev/dfabf40d8cb3
changeset: 3345:dfabf40d8cb3
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:01:51 2010 -0700
description:
No-op merge to remove plotting-refactor head

hg Repository: yt
details:   yt/rev/6c264cec3712
changeset: 3346:6c264cec3712
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:02:07 2010 -0700
description:
No-op merge to remove parallel-opt head

hg Repository: yt
details:   yt/rev/94ef428d1291
changeset: 3347:94ef428d1291
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:03:24 2010 -0700
description:
yt-1.7 as a branch is a historical artifact from svn.  'stable' will now refer to the stable branch and we will tag releases.

hg Repository: yt
details:   yt/rev/86a0d403294f
changeset: 3348:86a0d403294f
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:03:44 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/1af63373e479
changeset: 3349:1af63373e479
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:03:50 2010 -0700
description:
Closing this branch

hg Repository: yt
details:   yt/rev/d46d8b73fe69
changeset: 3350:d46d8b73fe69
user:      Matthew Turk <matthewturk at gmail.com>
date:
Mon Aug 30 10:04:29 2010 -0700
description:
trunk is a historical artifact from svn.  'stable' is now the stable branch.

diffstat:

 .hgignore                                                           |      3 -
 CREDITS                                                             |     18 +-
 distribute_setup.py                                                 |    477 -
 doc/Makefile                                                        |     71 +
 doc/README                                                          |      6 +-
 doc/coding_styleguide.txt                                           |     37 -
 doc/docs_html.zip                                                   |        
 doc/docstring_example.txt                                           |     86 -
 doc/docstring_idioms.txt                                            |     51 -
 doc/install_script.sh                                               |    262 +-
 doc/install_script_osx.sh                                           |    259 -
 doc/install_script_osx106.sh                                        |    335 -
 doc/source/.static/override.css                                     |      3 +
 doc/source/.templates/layout.html                                   |      5 +
 doc/source/_images/example_3dphase.png                              |        
 doc/source/_images/example_cuttingplane.png                         |        
 doc/source/_images/example_phaseplot.png                            |        
 doc/source/conf.py                                                  |    155 +
 doc/source/cookbook/analyzing_data.rst                              |     32 +
 doc/source/cookbook/extracting_data.rst                             |     22 +
 doc/source/cookbook/index.rst                                       |     39 +
 doc/source/cookbook/making_movies.rst                               |     31 +
 doc/source/cookbook/making_profiles.rst                             |     34 +
 doc/source/cookbook/making_simple_plots.rst                         |     66 +
 doc/source/cookbook/making_timeseries_plots.rst                     |     51 +
 doc/source/cookbook/plotting_profiles.rst                           |     31 +
 doc/source/extending/analyzing_in_parallel.rst                      |     35 +
 doc/source/extending/creating_datatypes.rst                         |     39 +
 doc/source/extending/creating_derived_fields.rst                    |    144 +
 doc/source/extending/creating_derived_quantities.rst                |     33 +
 doc/source/extending/index.rst                                      |     15 +
 doc/source/extending/plugin_file.rst                                |     30 +
 doc/source/extending/using_the_interpreter.rst                      |      2 +
 doc/source/extending/writing_scripts.rst                            |     12 +
 doc/source/faq.rst                                                  |    124 +
 doc/source/getting_started.rst                                      |    112 +
 doc/source/index.rst                                                |     26 +
 doc/source/intro.rst                                                |     97 +
 doc/source/modules/index.rst                                        |     12 +
 doc/source/modules/lagos/basedatatypes.rst                          |    132 +
 doc/source/modules/lagos/index.rst                                  |     20 +
 doc/source/modules/lagos/outputandhierarchy.rst                     |     13 +
 doc/source/modules/lagos/profiles_contours_hop.rst                  |     52 +
 doc/source/modules/raven/index.rst                                  |     19 +
 doc/source/modules/raven/plot3dinterface.rst                        |     25 +
 doc/source/modules/raven/plotcollection.rst                         |     37 +
 doc/source/modules/reason/index.rst                                 |     18 +
 doc/source/quick_guide/index.rst                                    |    106 +
 doc/source/static/yt_icon.png                                       |        
 doc/source/tutorial/advanced_objects.rst                            |     83 +
 doc/source/tutorial/automated_plotting.rst                          |     76 +
 doc/source/tutorial/basic_objects.rst                               |     77 +
 doc/source/tutorial/derived_fields.rst                              |     57 +
 doc/source/tutorial/example_script.rst                              |     37 +
 doc/source/tutorial/getting_started.rst                             |    102 +
 doc/source/tutorial/index.rst                                       |     22 +
 doc/source/tutorial/profiles.rst                                    |    124 +
 doc/source/tutorial/projections.rst                                 |     34 +
 doc/source/tutorial/using_reason.rst                                |    101 +
 doc/yt_icon.png                                                     |        
 doc/yt_icons.icns                                                   |        
 epydoc.cfg                                                          |    146 +
 examples/README                                                     |     10 -
 examples/automated_plotconfig.xml                                   |     51 +
 examples/clumping_factor.py                                         |     56 +
 examples/clumping_factors_all_datasets.py                           |     56 +
 examples/cookbook_extract_data.py                                   |     14 +
 examples/cookbook_hop_mass_sum.py                                   |     19 +
 examples/cookbook_linked_plot_save.py                               |     26 +
 examples/cookbook_make_timeseries.py                                |     20 +
 examples/cookbook_make_zoomin.py                                    |     18 +
 examples/cookbook_making_1d_profiles.py                             |     21 +
 examples/cookbook_making_2d_profiles.py                             |     25 +
 examples/cookbook_mass_sum.py                                       |     13 +
 examples/cookbook_multiple_fields_multiple_widths_plot.py           |     17 +
 examples/cookbook_multiple_fields_single_width_plot.py              |     12 +
 examples/cookbook_multiple_widths_plot.py                           |     15 +
 examples/cookbook_single_width_plot.py                              |      9 +
 examples/cookbook_timeseries_avg_temp.py                            |      2 +-
 examples/cookbook_timeseries_max_dens.py                            |      2 +-
 examples/fastBuildMerge.py                                          |     17 +-
 examples/fido_dirwatch.py                                           |     22 +
 examples/find_clumps_all_datasets.py                                |     57 +
 examples/find_clumps_dataset.py                                     |     33 +
 examples/makeLightCone.py                                           |     47 +
 examples/parallel_galaxy_analysis.py                                |     25 +
 examples/runHaloProfiler.py                                         |     10 +
 examples/sample_halo_profiler.par                                   |     37 +
 examples/sample_lightcone.par                                       |     17 +
 ez_setup.py                                                         |    275 +
 scripts/basic.py                                                    |      4 +-
 scripts/eyt                                                         |    152 -
 scripts/fbranch                                                     |      5 +-
 scripts/fbury                                                       |      5 +-
 scripts/fdigup                                                      |      5 +-
 scripts/fido                                                        |      5 +-
 scripts/fimport                                                     |      5 +-
 scripts/iyt                                                         |     17 +-
 scripts/yt_lodgeit.py                                               |      1 -
 setup.cfg                                                           |      4 +-
 setup.py                                                            |     14 +-
 tests/test_lagos.py                                                 |    181 +-
 yt/__init__.py                                                      |      4 +
 yt/_amr_utils/CICDeposit.pyx                                        |     80 -
 yt/_amr_utils/ContourFinding.pyx                                    |    176 -
 yt/_amr_utils/DepthFirstOctree.pyx                                  |    167 -
 yt/_amr_utils/FixedInterpolator.c                                   |    130 -
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 yt/_amr_utils/fortran_reader.pyx                                    |     70 -
 yt/_amr_utils/png_writer.pyx                                        |    170 -
 yt/amr_utils.c                                                      |  32107 ---------
 yt/amr_utils.pyx                                                    |     47 -
 yt/arraytypes.py                                                    |     11 -
 yt/cmdln.py                                                         |     10 +-
 yt/command_line.py                                                  |    666 -
 yt/commands.py                                                      |    282 +
 yt/config.py                                                        |     20 +-
 yt/convenience.py                                                   |     64 +-
 yt/data_objects/__init__.py                                         |      2 -
 yt/data_objects/analyzer_objects.py                                 |     61 -
 yt/data_objects/time_series.py                                      |     73 -
 yt/deliverator/README.txt                                           |      6 +
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 yt/deliverator/deliverator/getoptionvals.py                         |     59 +
 yt/deliverator/deliverator/json.py                                  |     33 +
 yt/deliverator/deliverator/model.py                                 |    141 +
 yt/deliverator/deliverator/raven_impl.py                            |    120 +
 yt/deliverator/deliverator/release.py                               |     17 +
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 yt/deliverator/deliverator/tests/test_model.py                      |     22 +
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 yt/deliverator/prod.cfg                                             |     90 +
 yt/deliverator/setup.py                                             |     62 +
 yt/deliverator/start-deliverator.py                                 |     26 +
 yt/enki/CreateNewProblem.py                                         |    141 +
 yt/enki/CreateNewRun.py                                             |     32 +
 yt/enki/EnkiDefs.py                                                 |     93 +
 yt/enki/GenerateICs.py                                              |     38 +
 yt/enki/HostProfiles.py                                             |     80 +
 yt/enki/Recompile.py                                                |     84 +
 yt/enki/SimulationInterface.py                                      |     66 +
 yt/enki/__init__.py                                                 |     68 +
 yt/enki/mes/CollapseTest.py                                         |    143 +
 yt/enki/mes/EnzoProblem.py                                          |    189 +
 yt/enki/mes/__init__.py                                             |     10 +
 yt/enki/mes/setup.py                                                |      9 +
 yt/enki/pyLSF.i                                                     |     29 +
 yt/enki/setup.py                                                    |     10 +
 yt/exceptions.py                                                    |     43 -
 yt/extensions/EnzoSimulation.py                                     |    527 -
 yt/extensions/HaloProfiler.py                                       |    571 +
 yt/extensions/HierarchySubset.py                                    |    348 +-
 yt/extensions/SpectralIntegrator.py                                 |      6 +-
 yt/extensions/StarAnalysis.py                                       |    475 -
 yt/extensions/_colormap_data.py                                     |    797 -
 yt/extensions/clump_tools.py                                        |     94 -
 yt/extensions/coordinate_transforms.py                              |    126 -
 yt/extensions/disk_analysis.py                                      |     71 -
 yt/extensions/enzo_test/README                                      |    270 -
 yt/extensions/enzo_test/__init__.py                                 |     30 -
 yt/extensions/enzo_test/halo_tests.py                               |     48 -
 yt/extensions/enzo_test/hydro_tests.py                              |     77 -
 yt/extensions/enzo_test/output_tests.py                             |    201 -
 yt/extensions/enzo_test/particle_tests.py                           |     59 -
 yt/extensions/enzo_test/run_tests.py                                |     13 -
 yt/extensions/enzo_test/runner.py                                   |    142 -
 yt/extensions/eps_writer.py                                         |   1043 -
 yt/extensions/halo_filters.py                                       |    115 -
 yt/extensions/halo_mass_function.py                                 |    736 -
 yt/extensions/halo_profiler.py                                      |    822 -
 yt/extensions/image_panner/__init__.py                              |     26 -
 yt/extensions/image_panner/pan_and_scan_widget.py                   |    332 -
 yt/extensions/image_panner/vm_panner.py                             |    495 -
 yt/extensions/image_writer.py                                       |    221 -
 yt/extensions/kdtree/LICENSE                                        |     98 -
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 yt/extensions/light_ray.py                                          |    372 -
 yt/extensions/lightcone/HaloMask.py                                 |    149 +-
 yt/extensions/lightcone/LightCone.py                                |    741 +
 yt/extensions/lightcone/LightConeProjection.py                      |     76 +-
 yt/extensions/lightcone/README                                      |     12 +
 yt/extensions/lightcone/UniqueSolution.py                           |     92 +-
 yt/extensions/lightcone/__init__.py                                 |      2 +-
 yt/extensions/lightcone/light_cone.py                               |    556 -
 yt/extensions/merger_tree.py                                        |   1130 -
 yt/extensions/mods.py                                               |     10 +-
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 yt/extensions/opengl_widgets/mip_viewer.py                          |    450 -
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 yt/extensions/volume_rendering/CUDARayCast.py                       |    168 -
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 yt/extensions/volume_rendering/camera.py                            |    293 -
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 yt/extensions/volume_rendering/setup.py                             |     14 -
 yt/extensions/volume_rendering/software_sampler.py                  |    182 -
 yt/extensions/volume_rendering/transfer_function_widget.py          |    227 -
 yt/extensions/volume_rendering/transfer_functions.py                |    619 -
 yt/fido/ParameterFileStorage.py                                     |    243 +-
 yt/fido/__init__.py                                                 |      7 +-
 yt/fido/share_data.py                                               |     83 -
 yt/funcs.py                                                         |    376 +-
 yt/lagos/BaseDataTypes.py                                           |   1259 +-
 yt/lagos/BaseGridType.py                                            |    577 +-
 yt/lagos/ChomboFields.py                                            |    105 -
 yt/lagos/Clump.py                                                   |    278 +
 yt/lagos/ContourFinder.py                                           |    108 +-
 yt/lagos/Cosmology.py                                               |      6 -
 yt/lagos/DataReadingFuncs.py                                        |    716 +-
 yt/lagos/DepthFirstOctree.c                                         |   5629 +
 yt/lagos/DepthFirstOctree.pyx                                       |    167 +
 yt/lagos/DerivedQuantities.py                                       |     88 +-
 yt/lagos/EnzoCosmology.py                                           |     15 +-
 yt/lagos/EnzoDefs.py                                                |     10 +-
 yt/lagos/EnzoFields.py                                              |    227 +-
 yt/lagos/EnzoFortranWrapper.py                                      |    313 +
 yt/lagos/FLASHFields.py                                             |     97 -
 yt/lagos/FieldInfoContainer.py                                      |    304 +
 yt/lagos/HDF5LightReader.c                                          |   1197 +-
 yt/lagos/HaloFinding.py                                             |   1845 -
 yt/lagos/HelperFunctions.py                                         |     23 +-
 yt/lagos/HierarchyType.py                                           |   2156 +-
 yt/lagos/Interpolators.c                                            |   2639 +
 yt/lagos/Interpolators.pyx                                          |    108 +
 yt/lagos/OrionDefs.py                                               |      3 +-
 yt/lagos/OutputTypes.py                                             |    552 +-
 yt/lagos/ParallelTools.py                                           |   1331 +-
 yt/lagos/ParticleIO.py                                              |    147 -
 yt/lagos/PointCombine.c                                             |    451 +-
 yt/lagos/Profiles.py                                                |    409 +-
 yt/lagos/RAMSESFields.py                                            |     33 -
 yt/lagos/RTIntegrator.c                                             |   2299 +
 yt/lagos/RTIntegrator.pyx                                           |    140 +
 yt/lagos/TwoPointFunctions.py                                       |    854 -
 yt/lagos/UniversalFields.py                                         |    219 +-
 yt/lagos/__init__.py                                                |     43 +-
 yt/lagos/clump_handling.py                                          |    290 -
 yt/lagos/field_info_container.py                                    |    432 -
 yt/lagos/fof/EnzoFOF.c                                              |    203 -
 yt/lagos/fof/README                                                 |     34 -
 yt/lagos/fof/__init__.py                                            |      3 -
 yt/lagos/fof/fof_main.c                                             |    134 -
 yt/lagos/fof/kd.c                                                   |    444 -
 yt/lagos/fof/kd.h                                                   |    203 -
 yt/lagos/fof/setup.py                                               |     16 -
 yt/lagos/fof/tipsydefs.h                                            |     46 -
 yt/lagos/hop/EnzoHop.c                                              |    332 +-
 yt/lagos/hop/HopOutput.py                                           |    274 +
 yt/lagos/hop/SS_HopOutput.py                                        |    359 +
 yt/lagos/hop/__init__.py                                            |      1 +
 yt/lagos/hop/hop_hop.c                                              |     46 +-
 yt/lagos/hop/hop_kd.c                                               |     30 +-
 yt/lagos/hop/hop_numpy.h                                            |     12 -
 yt/lagos/hop/hop_regroup.c                                          |     41 +-
 yt/lagos/hop/hop_smooth.c                                           |     73 +-
 yt/lagos/hop/kd.h                                                   |     13 +-
 yt/lagos/kd.py                                                      |    242 -
 yt/lagos/object_finding_mixin.py                                    |    168 -
 yt/lagos/parallelHOP/__init__.py                                    |      3 -
 yt/lagos/parallelHOP/parallelHOP.py                                 |   1500 -
 yt/lagos/parallelHOP/run.py                                         |     24 -
 yt/lagos/setup.py                                                   |     63 +-
 yt/lagos/solve_rate_cool.pyf                                        |    153 +
 yt/logger.py                                                        |     84 +-
 yt/math_utils.py                                                    |     46 -
 yt/mods.py                                                          |    127 +-
 yt/parallel_tools/__init__.py                                       |     27 -
 yt/parallel_tools/distributed_object_collection.py                  |    135 -
 yt/performance_counters.py                                          |    102 -
 yt/physical_constants.py                                            |     53 -
 yt/ramses_headers/FortranUnformatted_IO.hh                          |    291 -
 yt/ramses_headers/RAMSES_amr_data.hh                                |    970 -
 yt/ramses_headers/RAMSES_hydro_data.hh                              |    666 -
 yt/ramses_headers/RAMSES_info.hh                                    |    334 -
 yt/ramses_headers/RAMSES_particle_data.hh                           |    650 -
 yt/ramses_headers/RAMSES_poisson_data.hh                            |    249 -
 yt/ramses_headers/RAMSES_typedefs.h                                 |     21 -
 yt/ramses_headers/README                                            |      9 -
 yt/ramses_headers/data_iterators.hh                                 |     74 -
 yt/ramses_reader.pyx                                                |    741 -
 yt/raven/Callbacks.py                                               |    497 +-
 yt/raven/ColorMaps.py                                               |     14 -
 yt/raven/FixedResolution.py                                         |    173 +-
 yt/raven/Plot3DInterface.py                                         |    351 +
 yt/raven/PlotCollection.py                                          |    529 +
 yt/raven/PlotConfig.py                                              |    114 +
 yt/raven/PlotInterface.py                                           |     74 -
 yt/raven/PlotTypes.py                                               |    357 +-
 yt/raven/VTKInterface.py                                            |    502 +
 yt/raven/_MPL.c                                                     |    125 +-
 yt/raven/__init__.py                                                |     23 +-
 yt/raven/deliveration/__init__.py                                   |     39 +
 yt/raven/deliveration/services.py                                   |     89 +
 yt/raven/deliveration/services_server.py                            |    227 +
 yt/raven/deliveration/services_types.py                             |    202 +
 yt/raven/deliveration/setup.py                                      |      9 +
 yt/raven/deliveration/upload.py                                     |    150 +
 yt/raven/plot_collection.py                                         |   1589 -
 yt/raven/setup.py                                                   |      1 +
 yt/reason/App.py                                                    |      1 +
 yt/reason/Notebook.py                                               |      4 +-
 yt/reason/Toolbars.py                                               |      1 +
 yt/reason/__init__.py                                               |      1 +
 yt/reason/plot_editors.py                                           |    128 -
 yt/reason/reason_v2.py                                              |    476 -
 yt/reason/tvtk_interface.py                                         |    696 -
 yt/recipes.py                                                       |      8 +-
 yt/rpdb.py                                                          |    133 -
 yt/setup.py                                                         |     71 +-
 362 files changed, 26792 insertions(+), 77399 deletions(-)

diffs (truncated from 110308 to 300 lines):

diff -r 2a4a6d26a4f7 -r d46d8b73fe69 .hgignore
--- a/.hgignore	Tue Aug 10 13:41:51 2010 -0700
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-syntax: glob
-*.pyc
-.*.swp
diff -r 2a4a6d26a4f7 -r d46d8b73fe69 CREDITS
--- a/CREDITS	Tue Aug 10 13:41:51 2010 -0700
+++ b/CREDITS	Mon Aug 30 10:04:29 2010 -0700
@@ -1,17 +1,11 @@
-YT is a group effort.
+YT is increasingly a group project.
 
-Developers:                     Matthew Turk (matthewturk at gmail.com)
-                                Britton Smith (brittonsmith at gmail.com)
-                                Jeff Oishi (jsoishi at gmail.com)
-                                Stephen Skory (sskory at physics.ucsd.edu)
-                                Sam Skillman (samskillman at gmail.com)
-                                Devin Silvia (devin.silvia at gmail.com)
-                                John Wise (jwise at astro.princeton.edu)
-                                David Collins (dcollins at physics.ucsd.edu)
+Lead Developer:                     Matthew Turk (matthewturk at gmail.com)
+Orion Support:                      Jeff Oishi (jsoishi at gmail.com)
+Cosmology & Fragmentation Analysis: Britton Smith (brittonsmith at gmail.com)
+Galaxy Merger Trees:                Stephen Skory (sskory at physics.ucsd.edu)
 
 We also include the Delaunay Triangulation module written by Robert Kern of
-Enthought, the cmdln.py module by Trent Mick, and the progressbar module by
-Nilton Volpato.  The PasteBin interface code (as well as the PasteBin itself)
-was written by the Pocoo collective (pocoo.org).
+Enthought.
 
 Thanks to everyone for all your contributions!
diff -r 2a4a6d26a4f7 -r d46d8b73fe69 distribute_setup.py
--- a/distribute_setup.py	Tue Aug 10 13:41:51 2010 -0700
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,477 +0,0 @@
-#!python
-"""Bootstrap distribute installation
-
-If you want to use setuptools in your package's setup.py, just include this
-file in the same directory with it, and add this to the top of your setup.py::
-
-    from distribute_setup import use_setuptools
-    use_setuptools()
-
-If you want to require a specific version of setuptools, set a download
-mirror, or use an alternate download directory, you can do so by supplying
-the appropriate options to ``use_setuptools()``.
-
-This file can also be run as a script to install or upgrade setuptools.
-"""
-import os
-import sys
-import time
-import fnmatch
-import tempfile
-import tarfile
-from distutils import log
-
-try:
-    from site import USER_SITE
-except ImportError:
-    USER_SITE = None
-
-try:
-    import subprocess
-
-    def _python_cmd(*args):
-        args = (sys.executable,) + args
-        return subprocess.call(args) == 0
-
-except ImportError:
-    # will be used for python 2.3
-    def _python_cmd(*args):
-        args = (sys.executable,) + args
-        # quoting arguments if windows
-        if sys.platform == 'win32':
-            def quote(arg):
-                if ' ' in arg:
-                    return '"%s"' % arg
-                return arg
-            args = [quote(arg) for arg in args]
-        return os.spawnl(os.P_WAIT, sys.executable, *args) == 0
-
-DEFAULT_VERSION = "0.6.10"
-DEFAULT_URL = "http://pypi.python.org/packages/source/d/distribute/"
-SETUPTOOLS_FAKED_VERSION = "0.6c11"
-
-SETUPTOOLS_PKG_INFO = """\
-Metadata-Version: 1.0
-Name: setuptools
-Version: %s
-Summary: xxxx
-Home-page: xxx
-Author: xxx
-Author-email: xxx
-License: xxx
-Description: xxx
-""" % SETUPTOOLS_FAKED_VERSION
-
-
-def _install(tarball):
-    # extracting the tarball
-    tmpdir = tempfile.mkdtemp()
-    log.warn('Extracting in %s', tmpdir)
-    old_wd = os.getcwd()
-    try:
-        os.chdir(tmpdir)
-        tar = tarfile.open(tarball)
-        _extractall(tar)
-        tar.close()
-
-        # going in the directory
-        subdir = os.path.join(tmpdir, os.listdir(tmpdir)[0])
-        os.chdir(subdir)
-        log.warn('Now working in %s', subdir)
-
-        # installing
-        log.warn('Installing Distribute')
-        if not _python_cmd('setup.py', 'install'):
-            log.warn('Something went wrong during the installation.')
-            log.warn('See the error message above.')
-    finally:
-        os.chdir(old_wd)
-
-
-def _build_egg(egg, tarball, to_dir):
-    # extracting the tarball
-    tmpdir = tempfile.mkdtemp()
-    log.warn('Extracting in %s', tmpdir)
-    old_wd = os.getcwd()
-    try:
-        os.chdir(tmpdir)
-        tar = tarfile.open(tarball)
-        _extractall(tar)
-        tar.close()
-
-        # going in the directory
-        subdir = os.path.join(tmpdir, os.listdir(tmpdir)[0])
-        os.chdir(subdir)
-        log.warn('Now working in %s', subdir)
-
-        # building an egg
-        log.warn('Building a Distribute egg in %s', to_dir)
-        _python_cmd('setup.py', '-q', 'bdist_egg', '--dist-dir', to_dir)
-
-    finally:
-        os.chdir(old_wd)
-    # returning the result
-    log.warn(egg)
-    if not os.path.exists(egg):
-        raise IOError('Could not build the egg.')
-
-
-def _do_download(version, download_base, to_dir, download_delay):
-    egg = os.path.join(to_dir, 'distribute-%s-py%d.%d.egg'
-                       % (version, sys.version_info[0], sys.version_info[1]))
-    if not os.path.exists(egg):
-        tarball = download_setuptools(version, download_base,
-                                      to_dir, download_delay)
-        _build_egg(egg, tarball, to_dir)
-    sys.path.insert(0, egg)
-    import setuptools
-    setuptools.bootstrap_install_from = egg
-
-
-def use_setuptools(version=DEFAULT_VERSION, download_base=DEFAULT_URL,
-                   to_dir=os.curdir, download_delay=15, no_fake=True):
-    # making sure we use the absolute path
-    to_dir = os.path.abspath(to_dir)
-    was_imported = 'pkg_resources' in sys.modules or \
-        'setuptools' in sys.modules
-    try:
-        try:
-            import pkg_resources
-            if not hasattr(pkg_resources, '_distribute'):
-                if not no_fake:
-                    _fake_setuptools()
-                raise ImportError
-        except ImportError:
-            return _do_download(version, download_base, to_dir, download_delay)
-        try:
-            pkg_resources.require("distribute>="+version)
-            return
-        except pkg_resources.VersionConflict:
-            e = sys.exc_info()[1]
-            if was_imported:
-                sys.stderr.write(
-                "The required version of distribute (>=%s) is not available,\n"
-                "and can't be installed while this script is running. Please\n"
-                "install a more recent version first, using\n"
-                "'easy_install -U distribute'."
-                "\n\n(Currently using %r)\n" % (version, e.args[0]))
-                sys.exit(2)
-            else:
-                del pkg_resources, sys.modules['pkg_resources']    # reload ok
-                return _do_download(version, download_base, to_dir,
-                                    download_delay)
-        except pkg_resources.DistributionNotFound:
-            return _do_download(version, download_base, to_dir,
-                                download_delay)
-    finally:
-        if not no_fake:
-            _create_fake_setuptools_pkg_info(to_dir)
-
-def download_setuptools(version=DEFAULT_VERSION, download_base=DEFAULT_URL,
-                        to_dir=os.curdir, delay=15):
-    """Download distribute from a specified location and return its filename
-
-    `version` should be a valid distribute version number that is available
-    as an egg for download under the `download_base` URL (which should end
-    with a '/'). `to_dir` is the directory where the egg will be downloaded.
-    `delay` is the number of seconds to pause before an actual download
-    attempt.
-    """
-    # making sure we use the absolute path
-    to_dir = os.path.abspath(to_dir)
-    try:
-        from urllib.request import urlopen
-    except ImportError:
-        from urllib2 import urlopen
-    tgz_name = "distribute-%s.tar.gz" % version
-    url = download_base + tgz_name
-    saveto = os.path.join(to_dir, tgz_name)
-    src = dst = None
-    if not os.path.exists(saveto):  # Avoid repeated downloads
-        try:
-            log.warn("Downloading %s", url)
-            src = urlopen(url)
-            # Read/write all in one block, so we don't create a corrupt file
-            # if the download is interrupted.
-            data = src.read()
-            dst = open(saveto, "wb")
-            dst.write(data)
-        finally:
-            if src:
-                src.close()
-            if dst:
-                dst.close()
-    return os.path.realpath(saveto)
-
-
-def _patch_file(path, content):
-    """Will backup the file then patch it"""
-    existing_content = open(path).read()
-    if existing_content == content:
-        # already patched
-        log.warn('Already patched.')
-        return False
-    log.warn('Patching...')
-    _rename_path(path)
-    f = open(path, 'w')
-    try:
-        f.write(content)
-    finally:
-        f.close()
-    return True
-
-
-def _same_content(path, content):
-    return open(path).read() == content
-
-def _no_sandbox(function):
-    def __no_sandbox(*args, **kw):
-        try:
-            from setuptools.sandbox import DirectorySandbox
-            def violation(*args):
-                pass
-            DirectorySandbox._old = DirectorySandbox._violation
-            DirectorySandbox._violation = violation
-            patched = True
-        except ImportError:
-            patched = False
-
-        try:
-            return function(*args, **kw)
-        finally:
-            if patched:
-                DirectorySandbox._violation = DirectorySandbox._old
-                del DirectorySandbox._old
-
-    return __no_sandbox
-
- at _no_sandbox
-def _rename_path(path):
-    new_name = path + '.OLD.%s' % time.time()
-    log.warn('Renaming %s into %s', path, new_name)
-    os.rename(path, new_name)
-    return new_name
-
-def _remove_flat_installation(placeholder):
-    if not os.path.isdir(placeholder):
-        log.warn('Unkown installation at %s', placeholder)
-        return False
-    found = False
-    for file in os.listdir(placeholder):
-        if fnmatch.fnmatch(file, 'setuptools*.egg-info'):
-            found = True



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