[Yt-svn] yt-commit r435 - in trunk/doc: .static .templates build/doctrees build/doctrees/extending build/doctrees/modules/reason build/doctrees/tutorial build/html build/html/_sources build/html/_sources/extending build/html/_sources/modules/reason build/html/_sources/tutorial build/html/extending build/html/modules/reason build/html/tutorial source source/extending source/modules/reason source/tutorial
mturk at wrangler.dreamhost.com
mturk at wrangler.dreamhost.com
Sat May 3 20:37:55 PDT 2008
Author: mturk
Date: Sat May 3 20:37:53 2008
New Revision: 435
URL: http://yt.spacepope.org/changeset/435
Log:
Fixing the documentation structure in SVN, adding the outlines of the new
documents to write up. (Tomorrow, on the plane, I'll be doing quite a bit of
writing.)
Added:
trunk/doc/.static/
trunk/doc/.templates/
trunk/doc/build/doctrees/extending/
trunk/doc/build/doctrees/extending/index.doctree (contents, props changed)
trunk/doc/build/doctrees/faq.doctree (contents, props changed)
trunk/doc/build/doctrees/intro.doctree (contents, props changed)
trunk/doc/build/doctrees/modules/reason/
trunk/doc/build/doctrees/modules/reason/index.doctree (contents, props changed)
trunk/doc/build/doctrees/tutorial/index.doctree (contents, props changed)
trunk/doc/build/html/_sources/extending/
trunk/doc/build/html/_sources/extending/index.txt
trunk/doc/build/html/_sources/faq.txt
trunk/doc/build/html/_sources/intro.txt
trunk/doc/build/html/_sources/modules/reason/
trunk/doc/build/html/_sources/modules/reason/index.txt
trunk/doc/build/html/_sources/tutorial/index.txt
trunk/doc/build/html/extending/
trunk/doc/build/html/extending/index.html
trunk/doc/build/html/faq.html
trunk/doc/build/html/intro.html
trunk/doc/build/html/modules/reason/
trunk/doc/build/html/modules/reason/index.html
trunk/doc/build/html/tutorial/index.html
trunk/doc/source/extending/
trunk/doc/source/extending/index.rst
trunk/doc/source/faq.rst
trunk/doc/source/intro.rst
trunk/doc/source/modules/reason/
trunk/doc/source/modules/reason/index.rst
trunk/doc/source/tutorial/index.rst
- copied, changed from r434, /trunk/doc/source/tutorial/main.rst
Removed:
trunk/doc/build/doctrees/tutorial/main.doctree
trunk/doc/build/html/_sources/tutorial/main.txt
trunk/doc/build/html/tutorial/main.html
trunk/doc/source/tutorial/main.rst
Modified:
trunk/doc/build/doctrees/environment.pickle
trunk/doc/build/doctrees/index.doctree
trunk/doc/build/doctrees/tutorial/getting_started.doctree
trunk/doc/build/html/_sources/index.txt
trunk/doc/build/html/_sources/tutorial/getting_started.txt
trunk/doc/build/html/index.html
trunk/doc/build/html/searchindex.json
trunk/doc/build/html/tutorial/getting_started.html
trunk/doc/source/index.rst
trunk/doc/source/tutorial/getting_started.rst
Modified: trunk/doc/build/doctrees/environment.pickle
==============================================================================
Binary files. No diff available.
Added: trunk/doc/build/doctrees/extending/index.doctree
==============================================================================
Binary file. No diff available.
Added: trunk/doc/build/doctrees/faq.doctree
==============================================================================
Binary file. No diff available.
Modified: trunk/doc/build/doctrees/index.doctree
==============================================================================
Binary files. No diff available.
Added: trunk/doc/build/doctrees/intro.doctree
==============================================================================
Binary file. No diff available.
Added: trunk/doc/build/doctrees/modules/reason/index.doctree
==============================================================================
Binary file. No diff available.
Modified: trunk/doc/build/doctrees/tutorial/getting_started.doctree
==============================================================================
Binary files. No diff available.
Added: trunk/doc/build/doctrees/tutorial/index.doctree
==============================================================================
Binary file. No diff available.
Added: trunk/doc/build/html/_sources/extending/index.txt
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/_sources/extending/index.txt Sat May 3 20:37:53 2008
@@ -0,0 +1,20 @@
+Extending yt
+============
+
+Writing Scripts
+---------------
+
+Dealing with the Interpreter
+----------------------------
+
+Creating Datatypes
+------------------
+
+Creating Derived Quantities
+---------------------------
+
+Creating Derived Fields
+-----------------------
+
+Analyzing in Parallel
+---------------------
Added: trunk/doc/build/html/_sources/faq.txt
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/_sources/faq.txt Sat May 3 20:37:53 2008
@@ -0,0 +1,24 @@
+FAQ
+===
+
+Why Python?
+-----------
+
+What do I need to use yt?
+-------------------------
+
+What's up with the names?
+-------------------------
+
+Are there any restrictions on my use of yt?
+-------------------------------------------
+
+How can I help?
+---------------
+
+Something has gone wrong. What do I do?
+----------------------------------------
+
+Where can I go for support?
+---------------------------
+
Modified: trunk/doc/build/html/_sources/index.txt
==============================================================================
--- trunk/doc/build/html/_sources/index.txt (original)
+++ trunk/doc/build/html/_sources/index.txt Sat May 3 20:37:53 2008
@@ -1,18 +1,21 @@
-.. yt documentation master file, created by sphinx-quickstart on Sat May 3 15:25:47 2008.
- You can adapt this file completely to your liking, but it should at least
- contain the root `toctree` directive.
+yt Overview
+===========
-Welcome to yt's documentation!
-==============================
+yt is a toolkit designed to analyze, manage and plot adaptive mesh refinement
+data from the Enzo code.
Contents:
.. toctree::
:maxdepth: 2
- A Short Tutorial <tutorial/main>
+ intro
+ tutorial/index
+ extending/index
+ faq
modules/lagos/index
modules/raven/index
+ modules/reason/index
Indices and tables
==================
Added: trunk/doc/build/html/_sources/intro.txt
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/_sources/intro.txt Sat May 3 20:37:53 2008
@@ -0,0 +1,11 @@
+Introduction
+===========
+
+Adaptive Mesh Refinement Data
+-----------------------------
+
+What yt is and is not
+---------------------
+
+Prerequisites for yt
+--------------------
Added: trunk/doc/build/html/_sources/modules/reason/index.txt
==============================================================================
Modified: trunk/doc/build/html/_sources/tutorial/getting_started.txt
==============================================================================
--- trunk/doc/build/html/_sources/tutorial/getting_started.txt (original)
+++ trunk/doc/build/html/_sources/tutorial/getting_started.txt Sat May 3 20:37:53 2008
@@ -1,6 +1,17 @@
Getting Started
===============
+Getting into yt
+---------------
+
+For the purposes of this tutorial, I'm going to assume that python is
+installed, the prerequisites are installed and working, and that you know how
+to launch a python interpreter. So first off, let's start it up.
+
+.. code-block:: bash
+
+ $ python2.5
+
We start out by getting some stuff into our local namespace.
The import command is how an external module gets loaded. By default,
it shows up as the module name itself. But you can also import it as
@@ -11,6 +22,8 @@
>>> import yt.lagos as lagos
+The Hierarchy
+-------------
We first instantiate a StaticOutput. This is a pretty simple process - lagos
will grab the parameter file that you give it, parse it, set up some handy
@@ -30,6 +43,8 @@
>>> print v
>>> print c
+The Grids
+---------
The hierarchy object has some interesting methods that let us access the data
in different ways. Let's start by looking at the grids. ::
Added: trunk/doc/build/html/_sources/tutorial/index.txt
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/_sources/tutorial/index.txt Sat May 3 20:37:53 2008
@@ -0,0 +1,17 @@
+A Short Tutorial
+================
+
+
+
+Contents:
+
+.. toctree::
+ :maxdepth: 2
+
+ getting_started
+ basic_objects
+ derived_fields
+ profiles
+ automated_plotting
+ advanced_objects
+ projections
Added: trunk/doc/build/html/extending/index.html
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/extending/index.html Sat May 3 20:37:53 2008
@@ -0,0 +1,115 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+ <title>Extending yt — yt v0.3 documentation</title>
+ <link rel="stylesheet" href="../_static/default.css" type="text/css" />
+ <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: '../',
+ VERSION: '0.3'
+ };
+ </script>
+ <script type="text/javascript" src="../_static/jquery.js"></script>
+ <script type="text/javascript" src="../_static/interface.js"></script>
+ <script type="text/javascript" src="../_static/doctools.js"></script>
+ <link rel="contents" title="Global table of contents" href="../contents.html" />
+ <link rel="index" title="Global index" href="../genindex.html" />
+ <link rel="search" title="Search" href="../search.html" />
+ <link rel="top" title="yt v0.3 documentation" href="../index.html" />
+ <link rel="next" title="FAQ" href="../faq.html" />
+ <link rel="prev" title="A Short Tutorial" href="../tutorial/index.html" />
+ </head>
+ <body>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="../genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="../modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
+ <li class="right"><a href="../faq.html" title="FAQ" accesskey="N">next</a> |</li>
+ <li class="right"><a href="../tutorial/index.html" title="A Short Tutorial" accesskey="P">previous</a> |</li>
+ <li><a href="../index.html">yt v0.3 documentation</a> »</li>
+ </ul>
+ </div>
+ <div class="document">
+ <div class="documentwrapper">
+ <div class="bodywrapper">
+ <div class="body">
+
+
+ <div class="section">
+<h1 id="extending-yt">Extending yt<a class="headerlink" href="#extending-yt" title="Permalink to this headline">¶</a></h1>
+<div class="section">
+<h2 id="writing-scripts">Writing Scripts<a class="headerlink" href="#writing-scripts" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="dealing-with-the-interpreter">Dealing with the Interpreter<a class="headerlink" href="#dealing-with-the-interpreter" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="creating-datatypes">Creating Datatypes<a class="headerlink" href="#creating-datatypes" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="creating-derived-quantities">Creating Derived Quantities<a class="headerlink" href="#creating-derived-quantities" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="creating-derived-fields">Creating Derived Fields<a class="headerlink" href="#creating-derived-fields" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="analyzing-in-parallel">Analyzing in Parallel<a class="headerlink" href="#analyzing-in-parallel" title="Permalink to this headline">¶</a></h2>
+</div>
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sidebar">
+ <div class="sidebarwrapper">
+ <h3>Table Of Contents</h3>
+ <ul>
+<li><a class="reference" href="">Extending yt</a><ul>
+<li><a class="reference" href="#writing-scripts">Writing Scripts</a></li>
+<li><a class="reference" href="#dealing-with-the-interpreter">Dealing with the Interpreter</a></li>
+<li><a class="reference" href="#creating-datatypes">Creating Datatypes</a></li>
+<li><a class="reference" href="#creating-derived-quantities">Creating Derived Quantities</a></li>
+<li><a class="reference" href="#creating-derived-fields">Creating Derived Fields</a></li>
+<li><a class="reference" href="#analyzing-in-parallel">Analyzing in Parallel</a></li>
+</ul>
+</li>
+</ul>
+
+ <h4>Previous topic</h4>
+ <p class="topless"><a href="../tutorial/index.html" title="previous chapter">A Short Tutorial</a></p>
+ <h4>Next topic</h4>
+ <p class="topless"><a href="../faq.html" title="next chapter">FAQ</a></p>
+ <h3>This Page</h3>
+ <ul class="this-page-menu">
+ <li><a href="../_sources/extending/index.txt">Show Source</a></li>
+ </ul>
+ <h3>Quick search</h3>
+ <form class="search" action="../search.html" method="get">
+ <input type="text" name="q" size="18"> <input type="submit" value="Go" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+ </div>
+ </div>
+ <div class="clearer"></div>
+ </div>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="../genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="../modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
+ <li class="right"><a href="../faq.html" title="FAQ" accesskey="N">next</a> |</li>
+ <li class="right"><a href="../tutorial/index.html" title="A Short Tutorial" accesskey="P">previous</a> |</li>
+ <li><a href="../index.html">yt v0.3 documentation</a> »</li>
+ </ul>
+ </div>
+ <div class="footer">
+ © Copyright 2008, Matthew Turk.
+ Last updated on May 03, 2008.
+ </div>
+ </body>
+</html>
\ No newline at end of file
Added: trunk/doc/build/html/faq.html
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/faq.html Sat May 3 20:37:53 2008
@@ -0,0 +1,114 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+ <title>FAQ — yt v0.3 documentation</title>
+ <link rel="stylesheet" href="_static/default.css" type="text/css" />
+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: '',
+ VERSION: '0.3'
+ };
+ </script>
+ <script type="text/javascript" src="_static/jquery.js"></script>
+ <script type="text/javascript" src="_static/interface.js"></script>
+ <script type="text/javascript" src="_static/doctools.js"></script>
+ <link rel="contents" title="Global table of contents" href="contents.html" />
+ <link rel="index" title="Global index" href="genindex.html" />
+ <link rel="search" title="Search" href="search.html" />
+ <link rel="top" title="yt v0.3 documentation" href="index.html" />
+ <link rel="prev" title="Extending yt" href="extending/index.html" />
+ </head>
+ <body>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
+ <li class="right"><a href="extending/index.html" title="Extending yt" accesskey="P">previous</a> |</li>
+ <li><a href="index.html">yt v0.3 documentation</a> »</li>
+ </ul>
+ </div>
+ <div class="document">
+ <div class="documentwrapper">
+ <div class="bodywrapper">
+ <div class="body">
+
+
+ <div class="section">
+<h1 id="faq">FAQ<a class="headerlink" href="#faq" title="Permalink to this headline">¶</a></h1>
+<div class="section">
+<h2 id="why-python">Why Python?<a class="headerlink" href="#why-python" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="what-do-i-need-to-use-yt">What do I need to use yt?<a class="headerlink" href="#what-do-i-need-to-use-yt" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="what-s-up-with-the-names">What’s up with the names?<a class="headerlink" href="#what-s-up-with-the-names" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="are-there-any-restrictions-on-my-use-of-yt">Are there any restrictions on my use of yt?<a class="headerlink" href="#are-there-any-restrictions-on-my-use-of-yt" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="how-can-i-help">How can I help?<a class="headerlink" href="#how-can-i-help" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="something-has-gone-wrong-what-do-i-do">Something has gone wrong. What do I do?<a class="headerlink" href="#something-has-gone-wrong-what-do-i-do" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="where-can-i-go-for-support">Where can I go for support?<a class="headerlink" href="#where-can-i-go-for-support" title="Permalink to this headline">¶</a></h2>
+</div>
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sidebar">
+ <div class="sidebarwrapper">
+ <h3>Table Of Contents</h3>
+ <ul>
+<li><a class="reference" href="">FAQ</a><ul>
+<li><a class="reference" href="#why-python">Why Python?</a></li>
+<li><a class="reference" href="#what-do-i-need-to-use-yt">What do I need to use yt?</a></li>
+<li><a class="reference" href="#what-s-up-with-the-names">What’s up with the names?</a></li>
+<li><a class="reference" href="#are-there-any-restrictions-on-my-use-of-yt">Are there any restrictions on my use of yt?</a></li>
+<li><a class="reference" href="#how-can-i-help">How can I help?</a></li>
+<li><a class="reference" href="#something-has-gone-wrong-what-do-i-do">Something has gone wrong. What do I do?</a></li>
+<li><a class="reference" href="#where-can-i-go-for-support">Where can I go for support?</a></li>
+</ul>
+</li>
+</ul>
+
+ <h4>Previous topic</h4>
+ <p class="topless"><a href="extending/index.html" title="previous chapter">Extending yt</a></p>
+ <h3>This Page</h3>
+ <ul class="this-page-menu">
+ <li><a href="_sources/faq.txt">Show Source</a></li>
+ </ul>
+ <h3>Quick search</h3>
+ <form class="search" action="search.html" method="get">
+ <input type="text" name="q" size="18"> <input type="submit" value="Go" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+ </div>
+ </div>
+ <div class="clearer"></div>
+ </div>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
+ <li class="right"><a href="extending/index.html" title="Extending yt" accesskey="P">previous</a> |</li>
+ <li><a href="index.html">yt v0.3 documentation</a> »</li>
+ </ul>
+ </div>
+ <div class="footer">
+ © Copyright 2008, Matthew Turk.
+ Last updated on May 03, 2008.
+ </div>
+ </body>
+</html>
\ No newline at end of file
Modified: trunk/doc/build/html/index.html
==============================================================================
--- trunk/doc/build/html/index.html (original)
+++ trunk/doc/build/html/index.html Sat May 3 20:37:53 2008
@@ -2,7 +2,7 @@
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
- <title>Welcome to yt’s documentation! — yt v0.3 documentation</title>
+ <title>yt Overview — yt v0.3 documentation</title>
<link rel="stylesheet" href="_static/default.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<script type="text/javascript">
@@ -35,10 +35,20 @@
<div class="section">
-<h1 id="welcome-to-yt-s-documentation">Welcome to yt’s documentation!<a class="headerlink" href="#welcome-to-yt-s-documentation" title="Permalink to this headline">¶</a></h1>
+<h1 id="yt-overview">yt Overview<a class="headerlink" href="#yt-overview" title="Permalink to this headline">¶</a></h1>
+<p>yt is a toolkit designed to analyze, manage and plot adaptive mesh refinement
+data from the Enzo code.</p>
<p>Contents:</p>
<ul>
-<li><a class="reference" href="tutorial/main.html">A Short Tutorial</a><ul>
+<li><a class="reference" href="intro.html">Introduction</a><ul>
+<li><a class="reference" href="intro.html#adaptive-mesh-refinement-data">Adaptive Mesh Refinement Data</a></li>
+<li><a class="reference" href="intro.html#what-yt-is-and-is-not">What yt is and is not</a></li>
+<li><a class="reference" href="intro.html#prerequisites-for-yt">Prerequisites for yt</a></li>
+</ul>
+</li>
+</ul>
+<ul>
+<li><a class="reference" href="tutorial/index.html">A Short Tutorial</a><ul>
<li><a class="reference" href="tutorial/getting_started.html">Getting Started</a></li>
<li><a class="reference" href="tutorial/basic_objects.html">Basic Objects</a></li>
<li><a class="reference" href="tutorial/derived_fields.html">Derived Fields</a></li>
@@ -49,6 +59,31 @@
</ul>
</li>
</ul>
+<ul>
+<li><a class="reference" href="extending/index.html">Extending yt</a><ul>
+<li><a class="reference" href="extending/index.html#writing-scripts">Writing Scripts</a></li>
+<li><a class="reference" href="extending/index.html#dealing-with-the-interpreter">Dealing with the Interpreter</a></li>
+<li><a class="reference" href="extending/index.html#creating-datatypes">Creating Datatypes</a></li>
+<li><a class="reference" href="extending/index.html#creating-derived-quantities">Creating Derived Quantities</a></li>
+<li><a class="reference" href="extending/index.html#creating-derived-fields">Creating Derived Fields</a></li>
+<li><a class="reference" href="extending/index.html#analyzing-in-parallel">Analyzing in Parallel</a></li>
+</ul>
+</li>
+</ul>
+<ul>
+<li><a class="reference" href="faq.html">FAQ</a><ul>
+<li><a class="reference" href="faq.html#why-python">Why Python?</a></li>
+<li><a class="reference" href="faq.html#what-do-i-need-to-use-yt">What do I need to use yt?</a></li>
+<li><a class="reference" href="faq.html#what-s-up-with-the-names">What’s up with the names?</a></li>
+<li><a class="reference" href="faq.html#are-there-any-restrictions-on-my-use-of-yt">Are there any restrictions on my use of yt?</a></li>
+<li><a class="reference" href="faq.html#how-can-i-help">How can I help?</a></li>
+<li><a class="reference" href="faq.html#something-has-gone-wrong-what-do-i-do">Something has gone wrong. What do I do?</a></li>
+<li><a class="reference" href="faq.html#where-can-i-go-for-support">Where can I go for support?</a></li>
+</ul>
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+<ul class="simple">
+</ul>
<ul class="simple">
</ul>
<ul class="simple">
@@ -71,7 +106,7 @@
<div class="sidebarwrapper">
<h3>Table Of Contents</h3>
<ul>
-<li><a class="reference" href="">Welcome to yt’s documentation!</a><ul>
+<li><a class="reference" href="">yt Overview</a><ul>
</ul>
</li>
<li><a class="reference" href="#indices-and-tables">Indices and tables</a></li>
Added: trunk/doc/build/html/intro.html
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/intro.html Sat May 3 20:37:53 2008
@@ -0,0 +1,109 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+ <title>Introduction — yt v0.3 documentation</title>
+ <link rel="stylesheet" href="_static/default.css" type="text/css" />
+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
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+ <script type="text/javascript" src="_static/interface.js"></script>
+ <script type="text/javascript" src="_static/doctools.js"></script>
+ <link rel="contents" title="Global table of contents" href="contents.html" />
+ <link rel="index" title="Global index" href="genindex.html" />
+ <link rel="search" title="Search" href="search.html" />
+ <link rel="top" title="yt v0.3 documentation" href="index.html" />
+ <link rel="next" title="A Short Tutorial" href="tutorial/index.html" />
+ <link rel="prev" title="yt Overview" href="index.html" />
+ </head>
+ <body>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
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+ <li class="right"><a href="index.html" title="yt Overview" accesskey="P">previous</a> |</li>
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+ </div>
+ <div class="document">
+ <div class="documentwrapper">
+ <div class="bodywrapper">
+ <div class="body">
+
+
+ <div class="section">
+<h1 id="introduction">Introduction<a class="headerlink" href="#introduction" title="Permalink to this headline">¶</a></h1>
+<div class="system-message">
+<p class="system-message-title">System Message: WARNING/2 (<tt class="docutils">/Users/matthewturk/Development/yt/trunk/doc/source/intro.rst</tt>, line 2)</p>
+<p>Title underline too short.</p>
+<pre>Introduction
+===========</pre>
+</div>
+<div class="section">
+<h2 id="adaptive-mesh-refinement-data">Adaptive Mesh Refinement Data<a class="headerlink" href="#adaptive-mesh-refinement-data" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="what-yt-is-and-is-not">What yt is and is not<a class="headerlink" href="#what-yt-is-and-is-not" title="Permalink to this headline">¶</a></h2>
+</div>
+<div class="section">
+<h2 id="prerequisites-for-yt">Prerequisites for yt<a class="headerlink" href="#prerequisites-for-yt" title="Permalink to this headline">¶</a></h2>
+</div>
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sidebar">
+ <div class="sidebarwrapper">
+ <h3>Table Of Contents</h3>
+ <ul>
+<li><a class="reference" href="">Introduction</a><ul>
+<li><a class="reference" href="#adaptive-mesh-refinement-data">Adaptive Mesh Refinement Data</a></li>
+<li><a class="reference" href="#what-yt-is-and-is-not">What yt is and is not</a></li>
+<li><a class="reference" href="#prerequisites-for-yt">Prerequisites for yt</a></li>
+</ul>
+</li>
+</ul>
+
+ <h4>Previous topic</h4>
+ <p class="topless"><a href="index.html" title="previous chapter">yt Overview</a></p>
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+ <ul class="this-page-menu">
+ <li><a href="_sources/intro.txt">Show Source</a></li>
+ </ul>
+ <h3>Quick search</h3>
+ <form class="search" action="search.html" method="get">
+ <input type="text" name="q" size="18"> <input type="submit" value="Go" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+ </div>
+ </div>
+ <div class="clearer"></div>
+ </div>
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+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
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+ <li class="right"><a href="index.html" title="yt Overview" accesskey="P">previous</a> |</li>
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+ </ul>
+ </div>
+ <div class="footer">
+ © Copyright 2008, Matthew Turk.
+ Last updated on May 03, 2008.
+ </div>
+ </body>
+</html>
\ No newline at end of file
Added: trunk/doc/build/html/modules/reason/index.html
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/modules/reason/index.html Sat May 3 20:37:53 2008
@@ -0,0 +1,76 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+ <title> — yt v0.3 documentation</title>
+ <link rel="stylesheet" href="../../_static/default.css" type="text/css" />
+ <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
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+ </script>
+ <script type="text/javascript" src="../../_static/jquery.js"></script>
+ <script type="text/javascript" src="../../_static/interface.js"></script>
+ <script type="text/javascript" src="../../_static/doctools.js"></script>
+ <link rel="contents" title="Global table of contents" href="../../contents.html" />
+ <link rel="index" title="Global index" href="../../genindex.html" />
+ <link rel="search" title="Search" href="../../search.html" />
+ <link rel="top" title="yt v0.3 documentation" href="../../index.html" />
+ <link rel="next" title="FAQ" href="../../faq.html" />
+ </head>
+ <body>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
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+ <li class="right"><a href="../../faq.html" title="FAQ" accesskey="N">next</a> |</li>
+ <li><a href="../../index.html">yt v0.3 documentation</a> »</li>
+ </ul>
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+ <div class="documentwrapper">
+ <div class="bodywrapper">
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+
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+
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+ </div>
+ </div>
+ </div>
+ <div class="sidebar">
+ <div class="sidebarwrapper">
+ <h4>Next topic</h4>
+ <p class="topless"><a href="../../faq.html" title="next chapter">FAQ</a></p>
+ <h3>This Page</h3>
+ <ul class="this-page-menu">
+ <li><a href="../../_sources/modules/reason/index.txt">Show Source</a></li>
+ </ul>
+ <h3>Quick search</h3>
+ <form class="search" action="../../search.html" method="get">
+ <input type="text" name="q" size="18"> <input type="submit" value="Go" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+ </div>
+ </div>
+ <div class="clearer"></div>
+ </div>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="../../genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="../../modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
+ <li class="right"><a href="../../faq.html" title="FAQ" accesskey="N">next</a> |</li>
+ <li><a href="../../index.html">yt v0.3 documentation</a> »</li>
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+ © Copyright 2008, Matthew Turk.
+ Last updated on May 03, 2008.
+ </div>
+ </body>
+</html>
\ No newline at end of file
Modified: trunk/doc/build/html/searchindex.json
==============================================================================
--- trunk/doc/build/html/searchindex.json (original)
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\ No newline at end of file
Modified: trunk/doc/build/html/tutorial/getting_started.html
==============================================================================
--- trunk/doc/build/html/tutorial/getting_started.html (original)
+++ trunk/doc/build/html/tutorial/getting_started.html Sat May 3 20:37:53 2008
@@ -18,9 +18,9 @@
<link rel="index" title="Global index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="top" title="yt v0.3 documentation" href="../index.html" />
- <link rel="up" title="A Short Tutorial on yt" href="main.html" />
+ <link rel="up" title="A Short Tutorial" href="index.html" />
<link rel="next" title="Basic Objects" href="basic_objects.html" />
- <link rel="prev" title="A Short Tutorial on yt" href="main.html" />
+ <link rel="prev" title="A Short Tutorial" href="index.html" />
</head>
<body>
<div class="related">
@@ -29,9 +29,9 @@
<li class="right" style="margin-right: 10px"><a href="../genindex.html" title="General Index" accesskey="I">index</a></li>
<li class="right"><a href="../modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
<li class="right"><a href="basic_objects.html" title="Basic Objects" accesskey="N">next</a> |</li>
- <li class="right"><a href="main.html" title="A Short Tutorial on yt" accesskey="P">previous</a> |</li>
+ <li class="right"><a href="index.html" title="A Short Tutorial" accesskey="P">previous</a> |</li>
<li><a href="../index.html">yt v0.3 documentation</a> »</li>
- <li><a href="main.html" accesskey="U">A Short Tutorial on yt</a> »</li>
+ <li><a href="index.html" accesskey="U">A Short Tutorial</a> »</li>
</ul>
</div>
<div class="document">
@@ -42,6 +42,13 @@
<div class="section">
<h1 id="getting-started">Getting Started<a class="headerlink" href="#getting-started" title="Permalink to this headline">¶</a></h1>
+<div class="section">
+<h2 id="getting-into-yt">Getting into yt<a class="headerlink" href="#getting-into-yt" title="Permalink to this headline">¶</a></h2>
+<p>For the purposes of this tutorial, I’m going to assume that python is
+installed, the prerequisites are installed and working, and that you know how
+to launch a python interpreter. So first off, let’s start it up.</p>
+<div class="highlight"><pre><span class="nv">$ </span>python2.5
+</pre></div>
<p>We start out by getting some stuff into our local namespace.
The import command is how an external module gets loaded. By default,
it shows up as the module name itself. But you can also import it as
@@ -50,6 +57,9 @@
friend.</p>
<div class="highlight"><pre><span class="gp">>>> </span><span class="k">import</span> <span class="nn">yt.lagos</span> <span class="k">as</span> <span class="nn">lagos</span>
</pre></div>
+</div>
+<div class="section">
+<h2 id="the-hierarchy">The Hierarchy<a class="headerlink" href="#the-hierarchy" title="Permalink to this headline">¶</a></h2>
<p>We first instantiate a StaticOutput. This is a pretty simple process - lagos
will grab the parameter file that you give it, parse it, set up some handy
units, and then return control to you.:</p>
@@ -65,6 +75,9 @@
<span class="gp">>>> </span><span class="k">print</span> <span class="n">v</span>
<span class="gp">>>> </span><span class="k">print</span> <span class="n">c</span>
</pre></div>
+</div>
+<div class="section">
+<h2 id="the-grids">The Grids<a class="headerlink" href="#the-grids" title="Permalink to this headline">¶</a></h2>
<p>The hierarchy object has some interesting methods that let us access the data
in different ways. Let’s start by looking at the grids.</p>
<div class="highlight"><pre><span class="gp">>>> </span><span class="n">my_grid</span> <span class="o">=</span> <span class="n">a</span><span class="o">.</span><span class="n">h</span><span class="o">.</span><span class="n">grids</span><span class="p">[</span><span class="mf">0</span><span class="p">]</span> <span class="c"># The root grid</span>
@@ -82,6 +95,7 @@
<div class="highlight"><pre><span class="gp">>>> </span><span class="k">print</span> <span class="n">my_grid</span><span class="p">[</span><span class="s">"Density"</span><span class="p">]</span><span class="o">*</span><span class="n">my_grid</span><span class="p">[</span><span class="s">"Temperature"</span><span class="p">]</span>
</pre></div>
</div>
+</div>
</div>
@@ -89,8 +103,18 @@
</div>
<div class="sidebar">
<div class="sidebarwrapper">
+ <h3>Table Of Contents</h3>
+ <ul>
+<li><a class="reference" href="">Getting Started</a><ul>
+<li><a class="reference" href="#getting-into-yt">Getting into yt</a></li>
+<li><a class="reference" href="#the-hierarchy">The Hierarchy</a></li>
+<li><a class="reference" href="#the-grids">The Grids</a></li>
+</ul>
+</li>
+</ul>
+
<h4>Previous topic</h4>
- <p class="topless"><a href="main.html" title="previous chapter">A Short Tutorial on yt</a></p>
+ <p class="topless"><a href="index.html" title="previous chapter">A Short Tutorial</a></p>
<h4>Next topic</h4>
<p class="topless"><a href="basic_objects.html" title="next chapter">Basic Objects</a></p>
<h3>This Page</h3>
@@ -113,9 +137,9 @@
<li class="right" style="margin-right: 10px"><a href="../genindex.html" title="General Index" accesskey="I">index</a></li>
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<li class="right"><a href="basic_objects.html" title="Basic Objects" accesskey="N">next</a> |</li>
- <li class="right"><a href="main.html" title="A Short Tutorial on yt" accesskey="P">previous</a> |</li>
+ <li class="right"><a href="index.html" title="A Short Tutorial" accesskey="P">previous</a> |</li>
<li><a href="../index.html">yt v0.3 documentation</a> »</li>
- <li><a href="main.html" accesskey="U">A Short Tutorial on yt</a> »</li>
+ <li><a href="index.html" accesskey="U">A Short Tutorial</a> »</li>
</ul>
</div>
<div class="footer">
Added: trunk/doc/build/html/tutorial/index.html
==============================================================================
--- (empty file)
+++ trunk/doc/build/html/tutorial/index.html Sat May 3 20:37:53 2008
@@ -0,0 +1,106 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+ <title>A Short Tutorial — yt v0.3 documentation</title>
+ <link rel="stylesheet" href="../_static/default.css" type="text/css" />
+ <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: '../',
+ VERSION: '0.3'
+ };
+ </script>
+ <script type="text/javascript" src="../_static/jquery.js"></script>
+ <script type="text/javascript" src="../_static/interface.js"></script>
+ <script type="text/javascript" src="../_static/doctools.js"></script>
+ <link rel="contents" title="Global table of contents" href="../contents.html" />
+ <link rel="index" title="Global index" href="../genindex.html" />
+ <link rel="search" title="Search" href="../search.html" />
+ <link rel="top" title="yt v0.3 documentation" href="../index.html" />
+ <link rel="prev" title="FAQ" href="../intro.html" />
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+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="../genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="../modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
+ <li class="right"><a href="../intro.html" title="FAQ" accesskey="P">previous</a> |</li>
+ <li><a href="../index.html">yt v0.3 documentation</a> »</li>
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+ </div>
+ <div class="document">
+ <div class="documentwrapper">
+ <div class="bodywrapper">
+ <div class="body">
+
+
+ <div class="section">
+<h1 id="a-short-tutorial">A Short Tutorial<a class="headerlink" href="#a-short-tutorial" title="Permalink to this headline">¶</a></h1>
+<p>Contents:</p>
+<ul>
+<li><a class="reference" href="getting_started.html">Getting Started</a><ul>
+<li><a class="reference" href="getting_started.html#getting-into-yt">Getting into yt</a></li>
+<li><a class="reference" href="getting_started.html#the-hierarchy">The Hierarchy</a></li>
+<li><a class="reference" href="getting_started.html#the-grids">The Grids</a></li>
+</ul>
+</li>
+</ul>
+<ul>
+<li><a class="reference" href="basic_objects.html">Basic Objects</a></li>
+</ul>
+<ul>
+<li><a class="reference" href="derived_fields.html">Derived Fields</a></li>
+</ul>
+<ul>
+<li><a class="reference" href="profiles.html">Profiles</a></li>
+</ul>
+<ul>
+<li><a class="reference" href="automated_plotting.html">Automated Plotting</a></li>
+</ul>
+<ul>
+<li><a class="reference" href="advanced_objects.html">Advanced Objects</a></li>
+</ul>
+<ul>
+<li><a class="reference" href="projections.html">Projections</a></li>
+</ul>
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sidebar">
+ <div class="sidebarwrapper">
+ <h4>Previous topic</h4>
+ <p class="topless"><a href="../intro.html" title="previous chapter">FAQ</a></p>
+ <h3>This Page</h3>
+ <ul class="this-page-menu">
+ <li><a href="../_sources/tutorial/index.txt">Show Source</a></li>
+ </ul>
+ <h3>Quick search</h3>
+ <form class="search" action="../search.html" method="get">
+ <input type="text" name="q" size="18"> <input type="submit" value="Go" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+ </div>
+ </div>
+ <div class="clearer"></div>
+ </div>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px"><a href="../genindex.html" title="General Index" accesskey="I">index</a></li>
+ <li class="right"><a href="../modindex.html" title="Global Module Index" accesskey="M">modules</a> |</li>
+ <li class="right"><a href="../intro.html" title="FAQ" accesskey="P">previous</a> |</li>
+ <li><a href="../index.html">yt v0.3 documentation</a> »</li>
+ </ul>
+ </div>
+ <div class="footer">
+ © Copyright 2008, Matthew Turk.
+ Last updated on May 03, 2008.
+ </div>
+ </body>
+</html>
\ No newline at end of file
Added: trunk/doc/source/extending/index.rst
==============================================================================
--- (empty file)
+++ trunk/doc/source/extending/index.rst Sat May 3 20:37:53 2008
@@ -0,0 +1,20 @@
+Extending yt
+============
+
+Writing Scripts
+---------------
+
+Dealing with the Interpreter
+----------------------------
+
+Creating Datatypes
+------------------
+
+Creating Derived Quantities
+---------------------------
+
+Creating Derived Fields
+-----------------------
+
+Analyzing in Parallel
+---------------------
Added: trunk/doc/source/faq.rst
==============================================================================
--- (empty file)
+++ trunk/doc/source/faq.rst Sat May 3 20:37:53 2008
@@ -0,0 +1,24 @@
+FAQ
+===
+
+Why Python?
+-----------
+
+What do I need to use yt?
+-------------------------
+
+What's up with the names?
+-------------------------
+
+Are there any restrictions on my use of yt?
+-------------------------------------------
+
+How can I help?
+---------------
+
+Something has gone wrong. What do I do?
+----------------------------------------
+
+Where can I go for support?
+---------------------------
+
Modified: trunk/doc/source/index.rst
==============================================================================
--- trunk/doc/source/index.rst (original)
+++ trunk/doc/source/index.rst Sat May 3 20:37:53 2008
@@ -1,18 +1,21 @@
-.. yt documentation master file, created by sphinx-quickstart on Sat May 3 15:25:47 2008.
- You can adapt this file completely to your liking, but it should at least
- contain the root `toctree` directive.
+yt Overview
+===========
-Welcome to yt's documentation!
-==============================
+yt is a toolkit designed to analyze, manage and plot adaptive mesh refinement
+data from the Enzo code.
Contents:
.. toctree::
:maxdepth: 2
- A Short Tutorial <tutorial/main>
+ intro
+ tutorial/index
+ extending/index
+ faq
modules/lagos/index
modules/raven/index
+ modules/reason/index
Indices and tables
==================
Added: trunk/doc/source/intro.rst
==============================================================================
--- (empty file)
+++ trunk/doc/source/intro.rst Sat May 3 20:37:53 2008
@@ -0,0 +1,11 @@
+Introduction
+===========
+
+Adaptive Mesh Refinement Data
+-----------------------------
+
+What yt is and is not
+---------------------
+
+Prerequisites for yt
+--------------------
Added: trunk/doc/source/modules/reason/index.rst
==============================================================================
Modified: trunk/doc/source/tutorial/getting_started.rst
==============================================================================
--- trunk/doc/source/tutorial/getting_started.rst (original)
+++ trunk/doc/source/tutorial/getting_started.rst Sat May 3 20:37:53 2008
@@ -1,6 +1,17 @@
Getting Started
===============
+Getting into yt
+---------------
+
+For the purposes of this tutorial, I'm going to assume that python is
+installed, the prerequisites are installed and working, and that you know how
+to launch a python interpreter. So first off, let's start it up.
+
+.. code-block:: bash
+
+ $ python2.5
+
We start out by getting some stuff into our local namespace.
The import command is how an external module gets loaded. By default,
it shows up as the module name itself. But you can also import it as
@@ -11,6 +22,8 @@
>>> import yt.lagos as lagos
+The Hierarchy
+-------------
We first instantiate a StaticOutput. This is a pretty simple process - lagos
will grab the parameter file that you give it, parse it, set up some handy
@@ -30,6 +43,8 @@
>>> print v
>>> print c
+The Grids
+---------
The hierarchy object has some interesting methods that let us access the data
in different ways. Let's start by looking at the grids. ::
Copied: trunk/doc/source/tutorial/index.rst (from r434, /trunk/doc/source/tutorial/main.rst)
==============================================================================
--- /trunk/doc/source/tutorial/main.rst (original)
+++ trunk/doc/source/tutorial/index.rst Sat May 3 20:37:53 2008
@@ -1,5 +1,7 @@
-A Short Tutorial on yt
-======================
+A Short Tutorial
+================
+
+
Contents:
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