<div dir="ltr"><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Apr 14, 2016 at 1:58 PM, Reju Sam John <span dir="ltr"><<a href="mailto:rejusamjohn@gmail.com" target="_blank">rejusamjohn@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><div><div>Hi <br></div>I am getting the following error <br><br><span style="font-family:monospace,monospace">Setting YT_DIR=/data1/visitor/creju/yt_test/yt-x86_64/src/yt-hg/<br>Installing pip<br>********************************************<br> FAILURE REPORT:<br>********************************************<br><br>updating: yt/utilities/initial_conditions.py 1059/1210 files (87.52%)<br>updating: yt/frontends/eagle/setup.py 1097/1210 files (90.66%)<br>updating: yt/frontends/tipsy/data_structures.py 1135/1210 files (93.80%)<br>updating: yt/frontends/rockstar/fields.py 1173/1210 files (96.94%)<br>updating: yt/visualization/volume_rendering/transfer_functions.py 1210/1210 files (100.00%)<br>1210 files updated, 0 files merged, 0 files removed, 0 files unresolved<br>689 files updated, 0 files merged, 252 files removed, 0 files unresolved<br>(leaving bookmark @)<br>ERROR: certificate common name `*.<a href="http://c.ssl.fastly.net" target="_blank">c.ssl.fastly.net</a>' doesn't match requested host name `<a href="http://bootstrap.pypa.io" target="_blank">bootstrap.pypa.io</a>'.<br>To connect to <a href="http://bootstrap.pypa.io" target="_blank">bootstrap.pypa.io</a> insecurely, use `--no-check-certificate'.</span><br><br></div>in the following system <br><br><span style="font-family:monospace,monospace">LSB Version: :core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch<br>Distributor ID: RedHatEnterpriseServer<br>Description: Red Hat Enterprise Linux Server release 6.2 (Santiago)<br>Release: 6.2<br>Codename: Santiago</span><br><br></div></blockquote><div><br></div><div>Yes, this is a known issue with the version of wget shipped on that version of CentOS:</div><div><br></div><div><a href="https://docs.fastly.com/guides/debugging/tls-certificate-errors#errors-when-using-wget">https://docs.fastly.com/guides/debugging/tls-certificate-errors#errors-when-using-wget</a><br></div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><br><div><br></div></div><div class="gmail_extra"><div><div class="h5"><br><div class="gmail_quote">On Thu, Apr 14, 2016 at 11:36 PM, Hsi-Yu Schive <span dir="ltr"><<a href="mailto:hyschive@ntu.edu.tw" target="_blank">hyschive@ntu.edu.tw</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">The installation with conda works fine on the Campus cluster. Great!<div><br></div><div>Justin</div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">2016-04-14 10:12 GMT-05:00 Nathan Goldbaum <span dir="ltr"><<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><br><div class="gmail_extra"><br><div class="gmail_quote"><div><div>On Thu, Apr 14, 2016 at 8:44 AM, John Zuhone <span dir="ltr"><<a href="mailto:jzuhone@gmail.com" target="_blank">jzuhone@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word">Hi Nathan,<div><br></div><div>On El Capitan, running the install script with the default options, I get this:</div><div><br></div><div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>========================================================================</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Hi there! This is the yt installation script. We're going to download</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>some stuff and install it to create a self-contained, isolated</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>environment for yt to run within.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Inside the installation script you can set a few variables. Here's what</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>they're currently set to -- you can hit Ctrl-C and edit the values in </span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>the script if you aren't such a fan.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_PY3 = 0 so I won't be installing Python 3</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_HG = 1 so I will be installing Mercurial</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_UNSTRUCTURED = 0 so I won't be installing unstructured mesh rendering</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_PYX = 0 so I won't be installing PyX</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_ROCKSTAR = 0 so I won't be installing Rockstar</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_H5PY = 1 so I will be installing h5py</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_ASTROPY = 0 so I won't be installing astropy</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>INST_NOSE = 1 so I will be installing nose</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Installation will be to</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span> /Users/jzuhone/Source/yt-ng/doc/yt-conda</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>and I'll be logging the installation in</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span> /Users/jzuhone/Source/yt-ng/doc/yt-conda/yt_install.log</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>I think that about wraps it up. If you want to continue, hit enter. </span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>If you'd rather stop, maybe think things over, even grab a sandwich, </span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>hit Ctrl-C.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>========================================================================</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>[hit enter] </span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Awesome! Here we go.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Using wget</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Using shasum -a 512</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Downloading <a href="http://repo.continuum.io/miniconda/Miniconda2-latest-MacOSX-x86_64.sh" target="_blank">http://repo.continuum.io/miniconda/Miniconda2-latest-MacOSX-x86_64.sh</a></span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Installing the Miniconda python environment.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Installing the necessary packages for yt.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>This may take a while, but don't worry. yt loves you.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>********************************************</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span> FAILURE REPORT:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>********************************************</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>installing: pycrypto-2.6.1-py27_0 ...</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>installing: pip-8.1.1-py27_1 ...</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>installing: wheel-0.29.0-py27_0 ...</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>installing: setuptools-20.3-py27_0 ...</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Python 2.7.11 :: Continuum Analytics, Inc.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>creating default environment...</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>installation finished.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>EXECUTING:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span> conda update --yes conda</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Error: package 'conda' is not installed in /Users/jzuhone/Source/yt-ng/doc/yt-conda/envs/python2</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;min-height:13px"><span></span><br></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>********************************************</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>********************************************</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo"><span>Failure. Check /Users/jzuhone/Source/yt-ng/doc/yt-conda/yt_install.log. The last 10 lines are above.</span></div></div></div></blockquote><div><br></div></div></div><div>This should be fixed by this commit:</div><div><br></div><div><a href="https://bitbucket.org/ngoldbaum/yt/commits/351fd47" target="_blank">https://bitbucket.org/ngoldbaum/yt/commits/351fd47</a><br></div><div><br></div><div>Thanks for working this out with me on Slack.</div><span><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word"><div><div><span><br></span></div><div><blockquote type="cite"><div><div><div>On Apr 13, 2016, at 11:10 AM, Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>> wrote:</div><br></div></div><div><div><div><div dir="ltr">Hi all,<div><br></div><div>I'd appreciate it if people could try running my updated install script on a variety of platforms. With my changes, the install script sets up a conda environment by default, but the option to create a bootstrapped from-source python environment is still implemented. See PR 2009 for details:</div><div><br></div><div><a href="https://bitbucket.org/yt_analysis/yt/pull-requests/2009" target="_blank">https://bitbucket.org/yt_analysis/yt/pull-requests/2009</a><br></div><div><br></div><div>You can either grab the raw install_script.sh file from my fork:</div><div><br></div><div>$ wget <a href="https://bitbucket.org/ngoldbaum/yt/raw/install-script-updates/doc/install_script.sh" target="_blank">https://bitbucket.org/ngoldbaum/yt/raw/install-script-updates/doc/install_script.sh</a></div><div><br></div><div>Or pull from my fork and run the "test_install_script.py" that I've added. The latter will take a while, because it runs the install script six times with a variety of permutations in options.</div><div><br></div><div>Thanks for your help!</div><div><br></div><div>-Nathan</div></div></div></div><span>
_______________________________________________<br>yt-dev mailing list<br><a href="mailto:yt-dev@lists.spacepope.org" target="_blank">yt-dev@lists.spacepope.org</a><br><a href="http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org</a><br></span></div></blockquote></div><br></div></div><br>_______________________________________________<br>
yt-dev mailing list<br>
<a href="mailto:yt-dev@lists.spacepope.org" target="_blank">yt-dev@lists.spacepope.org</a><br>
<a href="http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org" rel="noreferrer" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org</a><br>
<br></blockquote></span></div><br></div></div>
<br>_______________________________________________<br>
yt-dev mailing list<br>
<a href="mailto:yt-dev@lists.spacepope.org" target="_blank">yt-dev@lists.spacepope.org</a><br>
<a href="http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org" rel="noreferrer" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org</a><br>
<br></blockquote></div><br></div>
</div></div><br>_______________________________________________<br>
yt-dev mailing list<br>
<a href="mailto:yt-dev@lists.spacepope.org" target="_blank">yt-dev@lists.spacepope.org</a><br>
<a href="http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org" rel="noreferrer" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org</a><br>
<br></blockquote></div><br><br clear="all"><br></div></div><span class=""><font color="#888888">-- <br><div><div dir="ltr">Reju Sam John</div></div>
</font></span></div>
<br>_______________________________________________<br>
yt-dev mailing list<br>
<a href="mailto:yt-dev@lists.spacepope.org">yt-dev@lists.spacepope.org</a><br>
<a href="http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org" rel="noreferrer" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org</a><br>
<br></blockquote></div><br></div></div>