[yt-dev] Issue #581: Source install error from fKDpy (yt_analysis/yt)

[Casey W. Stark]

No problem - didn't take long to fix it. Sounds good.


On Wed, May 29, 2013 at 2:51 PM, Matthew Turk <matthewturk at gmail.com> wrote:

> I'm going to pull it in ASAP, and I'll close it when I do.  Sorry
> about the trouble.  I'll do another big merge after 3.0a2 comes out.
>
> On Wed, May 29, 2013 at 5:48 PM, Casey W. Stark <caseywstark at gmail.com>
> wrote:
> > Should I close the issue or leave it open until this is pulled into 3.0?
> >
> >
> > On Wed, May 29, 2013 at 2:39 PM, Nathan Goldbaum <nathan12343 at gmail.com>
> > wrote:
> >>
> >> I left a comment on the bitbucket issue - the bug is fixed in 2.X but
> not
> >> fixed in 3.0.
> >>
> >> On May 29, 2013, at 2:36 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
> >>
> >> Hello All,
> >>
> >> I have seen this issue before, but I forget what fixed it.  What version
> >> of Python are you using?  Module shared objects get different names in
> >> Python 3.  This file would be called something like fKDpy.cpython.so
> >> instead, which is why setup.py would not find it.  Try a clean rebuild
> using
> >> Python 2.
> >>
> >> Be Well
> >> Anthony
> >>
> >>
> >> On Wed, May 29, 2013 at 4:25 PM, Casey Stark <
> issues-reply at bitbucket.org>
> >> wrote:
> >>>
> >>> New issue 581: Source install error from fKDpy
> >>>
> >>>
> https://bitbucket.org/yt_analysis/yt/issue/581/source-install-error-from-fkdpy
> >>>
> >>> Casey Stark:
> >>>
> >>> I'm installing yt-3.0 on NERSC's hopper following the instructions on
> >>> http://www.nersc.gov/users/software/development-tools/python-tools/.
> The
> >>> install fails because the setup script first decides not to build
> fKDpy.so,
> >>> but then later tries to copy it to the build directory. Here are the
> pieces
> >>> of the log:
> >>>
> >>> ```
> >>> $ python setup.py install --home=~/python_modules/hopper
> >>> PNG_LOCATION: png found in: /usr/include, /usr/lib
> >>> FTYPE_LOCATION: freetype found in: /usr/include, /usr/lib
> >>> HDF5_LOCATION: HDF5_DIR: /opt/cray/hdf5/1.8.8/gnu/47/include,
> >>> /opt/cray/hdf5/1.8.8/gnu/47/lib
> >>> running install
> >>> running bdist_egg
> >>> running egg_info
> >>> running build_src
> >>> running build_forthon
> >>> fKDpy.so won't be built due to missing Forthon/gfortran
> >>> build_src
> >>> ...
> >>> running install_data
> >>> error: can't copy 'yt/utilities/kdtree/fKDpy.so': doesn't exist or not
> a
> >>> regular file
> >>> ```
> >>>
> >>> Am I missing something here?
> >>>
> >>>
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> >>
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