[Yt-dev] Call for testing: New install script

Matthew Turk matthewturk at gmail.com
Wed Sep 8 10:33:50 PDT 2010 

Hi Rick,

Oh, shoot, I have not updated the OSX 10.6 scripts.  Have you
successfully used the standard install_script.sh in the past on
OSX106?  Usually I suggest people use install_script_osx106.sh, but I
haven't updated those yet...

I'll take a look at this error message anyway; it might be worthwhile,
since we're sort of shying away from "native" OSX 10.6 interfaces, to
make the *nix install script work on OSX 10.6.  I've insisted in the
past on framework builds, etc etc, but I cannot right now recall any
benefits besides when using GUIs for this...  and right now the GUIs
are so caveat emptor anyway that perhaps it's best to avoid them.

(Speaking of GUIs, I've had some fun experiments with proof-of-concept
web interfaces recently, maybe you'd be interested in taking a quick
look?  They're on my bitbucket site.)

-Matt

On Wed, Sep 8, 2010 at 10:30 AM, Rick Wagner <rwagner at physics.ucsd.edu> wrote:
> Hi Matt,
>
> On my OS X 10.6 MacBook Pro, I see this error "ld: unknown option: -soname" when  bzlib is being built. Full notes at the very bottom.
>
> --Rick
>
> Installing BZLIB
> Failure.  Check /Users/rpwagner/tmp/yt-test-install/yt-i386/yt_install.log.
> namor:yt-test-install rpwagner$ tail yt-i386/yt_install.log
> chmod a+r /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzmore.1
> chmod a+r /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzdiff.1
> echo ".so man1/bzgrep.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzegrep.1
> echo ".so man1/bzgrep.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzfgrep.1
> echo ".so man1/bzmore.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzless.1
> echo ".so man1/bzdiff.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzcmp.1
> gcc -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o
> ld: unknown option: -soname
> collect2: ld returned 1 exit status
> make: *** [all] Error 1
>
>
> On Sep 7, 2010, at 10:55 AM, Matthew Turk wrote:
>
>> Hi all,
>>
>> Jeff and I have re-written the install script to use mercurial.  This
>> involved adding in an optional bzip2 installation, as that was a
>> sticking point for several machines, as well as re-organizing it to
>> install bzip2 before Python and then hg before yt.  If you get a
>> chance, I'd really appreciate it if you could try running it:
>>
>> http://yt.enzotools.org/files/install_script.sh
>>
>> There's a "branch" name at the top that governs which yt branch gets
>> cloned and updated to in the installation section.
>>
>> Any feedback would be constructive; we need to replace the current
>> install script pretty soon, so let me know if this does or doesn't
>> work!
>>
>> Thanks,
>>
>> Matt
>> _______________________________________________
>> Yt-dev mailing list
>> Yt-dev at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
>
>
> namor:yt-test-install rpwagner$ wget http://yt.enzotools.org/files/install_script.sh
> --2010-09-08 10:26:13--  http://yt.enzotools.org/files/install_script.sh
> Resolving yt.enzotools.org... 208.113.211.100
> Connecting to yt.enzotools.org|208.113.211.100|:80... connected.
> HTTP request sent, awaiting response... 200 OK
> Length: 12883 (13K) [application/x-sh]
> Saving to: `install_script.sh'
>
> 100%[======================================>] 12,883      --.-K/s   in 0.05s
>
> 2010-09-08 10:26:14 (237 KB/s) - `install_script.sh' saved [12883/12883]
>
> namor:yt-test-install rpwagner$ head install_script.sh
> #
> # Hi there!  Welcome to the yt installation script.
> #
> # This script is designed to create a fully isolated Python installation
> # with the dependencies you need to run yt.
> #
> # There are a few options, but you only need to set *one* of them.  And
> # that's the next one, DEST_DIR.  But, if you want to use an existing HDF5
> # installation you can set HDF5_DIR, or if you want to use some other
> # subversion checkout of YT, you can set YT_DIR, too.  (It'll already
> namor:yt-test-install rpwagner$ bash install_script.sh
>
>
> ========================================================================
>
> Hi there!  This is the YT installation script.  We're going to download
> some stuff and install it to create a self-contained, isolated
> environment for YT to run within.
>
> Inside the installation script you can set a few variables.  Here's what
> they're currently set to -- you can hit Ctrl-C and edit the values in
> the script if you aren't such a fan.
>
> INST_ZLIB       = 1 so I will  be installing zlib
> INST_BZLIB      = 1 so I will  be installing bzlib
> INST_HG         = 1 so I will  be installing Mercurial
>
> HDF5_DIR is not set, so I will be installing HDF5
>
> Installation will be to
>  /Users/rpwagner/tmp/yt-test-install/yt-i386
>
> and I'll be logging the installation in
>  /Users/rpwagner/tmp/yt-test-install/yt-i386/yt_install.log
>
> I think that about wraps it up.  If you want to continue, hit enter.
> If you'd rather stop, maybe think things over, even grab a sandwich,
> hit Ctrl-C.
>
> ========================================================================
>
> [hit enter]
>
> Awesome!  Here we go.
>
> Downloading HDF5
> Downloading hdf5-1.6.9.tar.gz from yt.enzotools.org
> 2010-09-08 10:26:58 URL:http://yt.enzotools.org/dependencies/hdf5-1.6.9.tar.gz [5451465/5451465] -> "hdf5-1.6.9.tar.gz" [1]
> 2010-09-08 10:26:58 URL:http://yt.enzotools.org/dependencies/hdf5-1.6.9.tar.gz.md5 [52/52] -> "hdf5-1.6.9.tar.gz.md5" [1]
> Downloading zlib-1.2.3.tar.bz2 from yt.enzotools.org
> 2010-09-08 10:26:58 URL:http://yt.enzotools.org/dependencies/zlib-1.2.3.tar.bz2 [425209/425209] -> "zlib-1.2.3.tar.bz2" [1]
> 2010-09-08 10:26:58 URL:http://yt.enzotools.org/dependencies/zlib-1.2.3.tar.bz2.md5 [53/53] -> "zlib-1.2.3.tar.bz2.md5" [1]
> Downloading bzip2-1.0.5.tar.gz from yt.enzotools.org
> 2010-09-08 10:26:59 URL:http://yt.enzotools.org/dependencies/bzip2-1.0.5.tar.gz [841402/841402] -> "bzip2-1.0.5.tar.gz" [1]
> 2010-09-08 10:26:59 URL:http://yt.enzotools.org/dependencies/bzip2-1.0.5.tar.gz.md5 [53/53] -> "bzip2-1.0.5.tar.gz.md5" [1]
> Downloading libpng-1.2.43.tar.gz from yt.enzotools.org
> 2010-09-08 10:26:59 URL:http://yt.enzotools.org/dependencies/libpng-1.2.43.tar.gz [835683/835683] -> "libpng-1.2.43.tar.gz" [1]
> 2010-09-08 10:26:59 URL:http://yt.enzotools.org/dependencies/libpng-1.2.43.tar.gz.md5 [55/55] -> "libpng-1.2.43.tar.gz.md5" [1]
> Downloading Python-2.6.3.tgz from yt.enzotools.org
> 2010-09-08 10:27:02 URL:http://yt.enzotools.org/dependencies/Python-2.6.3.tgz [13319447/13319447] -> "Python-2.6.3.tgz" [1]
> 2010-09-08 10:27:02 URL:http://yt.enzotools.org/dependencies/Python-2.6.3.tgz.md5 [51/51] -> "Python-2.6.3.tgz.md5" [1]
> Downloading numpy-1.4.1.tar.gz from yt.enzotools.org
> 2010-09-08 10:27:03 URL:http://yt.enzotools.org/dependencies/numpy-1.4.1.tar.gz [2201795/2201795] -> "numpy-1.4.1.tar.gz" [1]
> 2010-09-08 10:27:03 URL:http://yt.enzotools.org/dependencies/numpy-1.4.1.tar.gz.md5 [53/53] -> "numpy-1.4.1.tar.gz.md5" [1]
> Downloading matplotlib-0.99.3.tar.gz from yt.enzotools.org
> 2010-09-08 10:27:06 URL:http://yt.enzotools.org/dependencies/matplotlib-0.99.3.tar.gz [11911989/11911989] -> "matplotlib-0.99.3.tar.gz" [1]
> 2010-09-08 10:27:06 URL:http://yt.enzotools.org/dependencies/matplotlib-0.99.3.tar.gz.md5 [59/59] -> "matplotlib-0.99.3.tar.gz.md5" [1]
> Downloading mercurial-1.6.3.tar.gz from yt.enzotools.org
> 2010-09-08 10:27:07 URL:http://yt.enzotools.org/dependencies/mercurial-1.6.3.tar.gz [2205031/2205031] -> "mercurial-1.6.3.tar.gz" [1]
> 2010-09-08 10:27:07 URL:http://yt.enzotools.org/dependencies/mercurial-1.6.3.tar.gz.md5 [57/57] -> "mercurial-1.6.3.tar.gz.md5" [1]
> Downloading ipython-0.10.tar.gz from yt.enzotools.org
> 2010-09-08 10:27:08 URL:http://yt.enzotools.org/dependencies/ipython-0.10.tar.gz [5829939/5829939] -> "ipython-0.10.tar.gz" [1]
> 2010-09-08 10:27:09 URL:http://yt.enzotools.org/dependencies/ipython-0.10.tar.gz.md5 [54/54] -> "ipython-0.10.tar.gz.md5" [1]
> Downloading h5py-1.2.0.tar.gz from yt.enzotools.org
> 2010-09-08 10:27:09 URL:http://yt.enzotools.org/dependencies/h5py-1.2.0.tar.gz [1028626/1028626] -> "h5py-1.2.0.tar.gz" [1]
> 2010-09-08 10:27:09 URL:http://yt.enzotools.org/dependencies/h5py-1.2.0.tar.gz.md5 [52/52] -> "h5py-1.2.0.tar.gz.md5" [1]
> Installing BZLIB
> Failure.  Check /Users/rpwagner/tmp/yt-test-install/yt-i386/yt_install.log.
> namor:yt-test-install rpwagner$ tail yt-i386/yt_install.log
> chmod a+r /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzmore.1
> chmod a+r /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzdiff.1
> echo ".so man1/bzgrep.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzegrep.1
> echo ".so man1/bzgrep.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzfgrep.1
> echo ".so man1/bzmore.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzless.1
> echo ".so man1/bzdiff.1" > /Users/rpwagner/tmp/yt-test-install/yt-i386/man/man1/bzcmp.1
> gcc -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o
> ld: unknown option: -soname
> collect2: ld returned 1 exit status
> make: *** [all] Error 1
> namor:yt-test-install rpwagner$
>
> _______________________________________________
> Yt-dev mailing list
> Yt-dev at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
>

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